##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548239_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 822751 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.101265145833917 28.0 25.0 31.0 16.0 33.0 2 27.60027031264623 30.0 25.0 33.0 16.0 33.0 3 27.556238764826784 31.0 25.0 33.0 16.0 34.0 4 31.516573057948275 33.0 28.0 35.0 19.0 37.0 5 32.9464686156565 35.0 32.0 35.0 28.0 37.0 6 31.613589044559046 35.0 31.0 35.0 19.0 37.0 7 33.5999859009591 35.0 33.0 35.0 30.0 37.0 8 33.477792187429735 35.0 33.0 37.0 28.0 37.0 9 35.984307524390736 38.0 35.0 39.0 31.0 39.0 10 35.378295498881194 37.0 34.0 39.0 31.0 39.0 11 35.8687233440008 37.0 35.0 39.0 31.0 39.0 12 35.94152665873393 37.0 35.0 39.0 31.0 39.0 13 36.02060404666783 37.0 35.0 39.0 32.0 39.0 14 36.60523414739089 38.0 36.0 40.0 31.0 41.0 15 37.07768814623136 38.0 36.0 40.0 32.0 41.0 16 36.50547735584642 38.0 34.0 40.0 32.0 41.0 17 36.28753900025646 38.0 35.0 40.0 31.0 41.0 18 36.25037465770324 38.0 35.0 39.0 31.0 40.0 19 35.804714913746686 37.0 34.0 39.0 30.0 40.0 20 36.10254135212233 37.0 34.0 39.0 31.0 40.0 21 35.99027166177859 37.0 34.0 39.0 30.0 40.0 22 36.48424249864175 38.0 35.0 40.0 31.0 41.0 23 36.68103107744628 38.0 35.0 40.0 32.0 41.0 24 36.69339447779462 38.0 35.0 40.0 32.0 41.0 25 35.818591530122724 38.0 34.0 40.0 29.0 41.0 26 36.11768202044118 38.0 35.0 40.0 30.0 41.0 27 36.359334719739024 38.0 35.0 40.0 31.0 41.0 28 36.21726257397439 38.0 35.0 40.0 31.0 41.0 29 36.32131835755897 38.0 35.0 40.0 31.0 41.0 30 35.57479480426034 38.0 35.0 40.0 29.0 41.0 31 35.41651726950195 38.0 34.0 40.0 29.0 41.0 32 35.128517619547104 38.0 34.0 40.0 26.0 41.0 33 34.870499093893535 38.0 34.0 40.0 24.0 41.0 34 34.49599939714446 38.0 34.0 40.0 21.0 41.0 35 34.28184347390644 38.0 34.0 40.0 20.0 41.0 36 33.87398617564731 38.0 33.0 40.0 17.0 41.0 37 33.68237291720095 38.0 33.0 40.0 16.0 41.0 38 33.56673039595211 37.0 33.0 40.0 16.0 41.0 39 33.48177273561503 37.0 33.0 40.0 15.0 41.0 40 33.36094152422786 37.0 33.0 40.0 15.0 41.0 41 33.080030288629246 37.0 32.0 40.0 15.0 40.0 42 33.181888566528634 37.0 33.0 40.0 15.0 41.0 43 33.08462341583298 37.0 33.0 40.0 15.0 41.0 44 33.08140859142073 37.0 32.0 40.0 15.0 41.0 45 33.237076588177956 37.0 33.0 40.0 15.0 41.0 46 32.94888611499712 37.0 32.0 40.0 14.0 40.0 47 32.868506996649046 37.0 31.0 40.0 15.0 41.0 48 32.932599291887826 37.0 32.0 40.0 15.0 40.0 49 32.999251292310795 37.0 32.0 40.0 13.0 41.0 50 32.777705526945574 36.0 31.0 40.0 12.0 40.0 51 30.540480655751253 34.0 27.0 38.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 4.0 9 14.0 10 20.0 11 29.0 12 26.0 13 32.0 14 53.0 15 103.0 16 252.0 17 490.0 18 1239.0 19 2450.0 20 4142.0 21 6367.0 22 8085.0 23 9495.0 24 11231.0 25 14793.0 26 17913.0 27 18769.0 28 17755.0 29 17525.0 30 20898.0 31 27579.0 32 38142.0 33 54790.0 34 75475.0 35 101969.0 36 136181.0 37 142224.0 38 81745.0 39 12960.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.40214840212896 23.921939930793158 25.795532305642897 17.88037936143499 2 35.7565047019086 24.182286013629884 26.585686313356042 13.475522971105475 3 26.282678477449434 23.30863165161756 37.058113572636195 13.350576298296811 4 23.662201565236625 27.3356094371201 34.75656668907118 14.245622308572095 5 19.92425411819615 29.211511137634595 34.489778803064354 16.374455941104905 6 17.506754777569398 35.59789049177698 33.28236611076741 13.61298861988621 7 69.71489551516802 6.733872094959471 18.784054957089083 4.76717743278343 8 64.02374472957189 6.756722264694908 18.72984657569544 10.489686430037763 9 57.66775123943939 8.673948740262851 24.365695088793572 9.292604931504185 10 29.227919504199935 29.323209573734943 26.280976869064883 15.16789405300024 11 20.53646850626739 25.723578579667482 35.64602170036864 18.09393121369649 12 20.66177980944417 18.128571098667763 41.10162126816011 20.108027823727955 13 21.023250047705808 23.46505807954047 41.288312016636866 14.223379856116857 14 13.885732135238973 31.107102878027497 34.494275910937816 20.512889075795716 15 10.131740952001273 24.208417856678388 48.37247235190233 17.287368839418 16 10.748938621770135 27.1558466656376 40.169869134160884 21.925345578431386 17 10.891144465336414 26.1172578337796 35.39649298511943 27.595104715764553 18 13.566194389310981 24.15080625851564 40.49086540156135 21.792133950612033 19 15.193904352592705 28.92004993005174 37.02590455678571 18.860141160569842 20 17.838082238733225 27.140532190176614 35.913052673287545 19.108332897802615 21 14.514111802963473 31.978934088199225 36.89305755933447 16.613896549502826 22 12.275524429626946 26.337859206491395 33.12800592159718 28.258610442284482 23 12.361334109590873 30.287292267040694 34.48455243445465 22.86682118891378 24 15.231096650140808 24.455637246262842 35.04705554900571 25.266210554590636 25 13.632435572852538 28.909718736288383 33.08522262507125 24.372623065787828 26 14.179867298854695 27.582950370160596 37.130188842067646 21.106993488917063 27 17.97870801737099 27.996076577239045 33.635692937474396 20.389522467915565 28 13.61335325025433 27.43138568047927 37.60773308084706 21.34752798841934 29 18.398154484163495 24.436554923664634 32.13292964700134 25.032360945170534 30 21.678976993039207 25.82482427854843 31.84633017766007 20.64986855075229 31 18.00338133894702 33.04632871913859 26.49173322183747 22.458556720076913 32 22.378338039090806 28.781976563990806 25.06031594005963 23.77936945685876 33 20.953241017027022 26.66444647286968 29.13724808599443 23.245064424108875 34 20.985206945965427 28.22919692592291 29.110386982209686 21.67520914590198 35 20.201616284878416 25.922788304116313 27.23181132566232 26.643784085342954 36 27.03770642636715 26.236248877242325 29.650647644305504 17.075397052085016 37 21.067734952616284 29.880243232764226 29.569699702583165 19.482322112036325 38 21.656612997127926 32.01211545169802 24.61473763021862 21.716533920955428 39 28.482736575221423 24.056853166997065 24.429262316302257 23.031147941479258 40 27.75712214266528 25.46906658272065 29.009992087521013 17.76381918709306 41 22.158344383659212 27.288815206544868 26.01795683019528 24.534883579600635 42 28.372739747505626 24.127591458412084 28.587020860503358 18.91264793357893 43 24.775539622558952 20.610974644819635 33.0404946332487 21.572991099372715 44 22.33385313418033 24.75135247480708 27.577116284270698 25.337678106741894 45 20.58581514941945 20.709667931123754 29.883281819165212 28.82123510029158 46 27.071981680970307 23.62269994202377 28.73141448627835 20.57390389072757 47 18.695571321092284 24.695928658853042 32.87081996861748 23.73768005143719 48 19.20848470557921 22.733974191462544 31.598989244619574 26.45855185833867 49 24.766545406812025 17.486092390042675 33.08595188580749 24.661410317337808 50 19.900310057356357 17.147593864972514 35.692208213663676 27.25988786400746 51 18.586182210656688 17.293932186044138 28.92284542954065 35.19704017375852 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1630.0 1 1537.0 2 1444.0 3 9751.5 4 18059.0 5 12379.0 6 6699.0 7 6850.5 8 7002.0 9 7356.5 10 7711.0 11 7724.0 12 7737.0 13 7821.0 14 7905.0 15 7714.5 16 7524.0 17 7457.0 18 7390.0 19 7253.5 20 7117.0 21 6971.0 22 6825.0 23 6457.5 24 6090.0 25 6367.0 26 7691.0 27 8738.0 28 10074.5 29 11411.0 30 11804.0 31 12197.0 32 12572.0 33 12947.0 34 14518.5 35 16090.0 36 15452.0 37 14814.0 38 16365.5 39 17917.0 40 22852.5 41 27788.0 42 35466.0 43 43144.0 44 54658.0 45 66172.0 46 87605.5 47 109039.0 48 118693.5 49 128348.0 50 117930.5 51 107513.0 52 84368.0 53 61223.0 54 47013.5 55 32804.0 56 26211.0 57 19618.0 58 15704.0 59 11790.0 60 9869.5 61 7949.0 62 6835.0 63 5721.0 64 4498.0 65 3275.0 66 2546.5 67 1818.0 68 1386.5 69 955.0 70 890.5 71 826.0 72 659.5 73 493.0 74 337.0 75 132.5 76 84.0 77 61.0 78 38.0 79 44.0 80 50.0 81 32.5 82 15.0 83 10.0 84 5.0 85 5.5 86 6.0 87 4.5 88 3.0 89 2.0 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 822751.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.54770938217997 #Duplication Level Percentage of deduplicated Percentage of total 1 74.52977195589511 26.49362673808306 2 10.322760366646055 7.339009710708389 3 4.346249005915276 4.634975896945944 4 2.359537155546932 3.3550456432735167 5 1.461343119684057 2.597370026308855 6 1.0187510255780199 2.1728559234027145 7 0.7232761452171822 1.799756714927065 8 0.5658500799868199 1.609173935780381 9 0.4364996497539658 1.396490642538959 >10 3.8294921670453426 28.823939412459744 >50 0.30727146546117123 7.11357874658425 >100 0.08952002295106669 6.123400248743192 >500 0.005184557313768222 1.1559241851634343 >1k 0.003456371542512148 2.4954103104452967 >5k 6.912743085024295E-4 1.492823006987216 >10k+ 3.4563715425121476E-4 1.3966188576480398 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11367 1.381584464801623 No Hit CTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTGCT 6112 0.7428736033137608 No Hit GCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTGC 6038 0.7338793875668337 No Hit CCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTGC 3301 0.40121494838657135 No Hit TCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTGC 3027 0.3679120414317333 No Hit ACTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTGC 2287 0.2779698839624625 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGC 2251 0.27359431954503854 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCG 2223 0.270191102775931 No Hit GAATCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTC 1966 0.23895443457376533 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCC 1538 0.18693383538883576 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1412 0.1716193599278518 No Hit AGCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTG 1194 0.1451228865112288 No Hit AAAACTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTC 1111 0.13503477965994573 No Hit ACCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTG 912 0.11084763190807424 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.215434560395551E-4 0.0 0.0 0.8607707556721292 0.0 2 1.215434560395551E-4 0.0 0.0 2.882524603434089 0.0 3 1.215434560395551E-4 0.0 0.0 3.811602781400448 0.0 4 1.215434560395551E-4 0.0 0.0 5.312421376576874 0.0 5 1.215434560395551E-4 0.0 0.0 8.907555262770876 0.0 6 1.215434560395551E-4 0.0 0.0 11.459117035409255 0.0 7 1.215434560395551E-4 0.0 0.0 13.347051538071664 0.0 8 1.215434560395551E-4 0.0 0.0 18.187884305215064 0.0 9 1.215434560395551E-4 0.0 0.0 20.03279242443947 0.0 10 1.215434560395551E-4 0.0 0.0 24.127713001868123 0.0 11 1.215434560395551E-4 0.0 0.0 28.247428444328843 0.0 12 1.215434560395551E-4 0.0 0.0 32.05040164035048 0.0 13 1.215434560395551E-4 0.0 0.0 33.309834931832356 0.0 14 1.215434560395551E-4 0.0 0.0 33.71165759749912 0.0 15 1.215434560395551E-4 0.0 0.0 34.513115146623946 0.0 16 1.215434560395551E-4 0.0 0.0 36.17898975510209 0.0 17 1.215434560395551E-4 0.0 0.0 38.08333262432984 0.0 18 2.430869120791102E-4 0.0 0.0 41.82298167975487 0.0 19 2.430869120791102E-4 0.0 0.0 42.969865730944115 0.0 20 2.430869120791102E-4 0.0 0.0 44.27402701424854 0.0 21 2.430869120791102E-4 0.0 0.0 45.25731357360854 0.0 22 2.430869120791102E-4 0.0 0.0 46.14616086762581 0.0 23 2.430869120791102E-4 0.0 0.0 47.103072497025224 0.0 24 2.430869120791102E-4 0.0 0.0 47.79392550115406 0.0 25 2.430869120791102E-4 0.0 0.0 48.33187683758513 0.0 26 2.430869120791102E-4 0.0 0.0 48.83044809425938 0.0 27 2.430869120791102E-4 0.0 0.0 49.31443413620889 0.0 28 2.430869120791102E-4 0.0 0.0 49.8426619961568 0.0 29 2.430869120791102E-4 0.0 0.0 50.33357601510056 0.0 30 2.430869120791102E-4 0.0 0.0 50.91601225644211 0.0 31 2.430869120791102E-4 0.0 0.0 51.43840603050011 0.0 32 2.430869120791102E-4 0.0 0.0 51.92178435516943 0.0 33 2.430869120791102E-4 0.0 0.0 52.40042248505319 0.0 34 3.646303681186653E-4 0.0 0.0 52.83980207863618 0.0 35 3.646303681186653E-4 0.0 0.0 53.3376440745742 0.0 36 3.646303681186653E-4 0.0 0.0 53.7478532387077 0.0 37 3.646303681186653E-4 0.0 0.0 54.18577431081822 0.0 38 3.646303681186653E-4 0.0 0.0 54.59379569274301 0.0 39 3.646303681186653E-4 0.0 0.0 54.98674568611889 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAC 30 2.1647465E-6 45.000004 25 GTCGATG 30 2.1647465E-6 45.000004 1 GTTAGCG 30 2.1647465E-6 45.000004 1 ATCCGAG 30 2.1647465E-6 45.000004 31 GTCCCGA 30 2.1647465E-6 45.000004 38 CGACTGG 30 2.1647465E-6 45.000004 2 GTCGACC 20 7.032116E-4 45.0 10 CTCCGCC 25 3.889836E-5 45.0 45 GCACGAG 20 7.032116E-4 45.0 1 CACGATA 20 7.032116E-4 45.0 19 CACGACA 25 3.889836E-5 45.0 34 AGTATCG 20 7.032116E-4 45.0 1 ATATCCG 20 7.032116E-4 45.0 12 GCATTAT 20 7.032116E-4 45.0 9 TACGCGG 20 7.032116E-4 45.0 2 CACTAGG 25 3.889836E-5 45.0 2 GGAACGA 20 7.032116E-4 45.0 8 ACTACGG 25 3.889836E-5 45.0 2 CGAATTA 20 7.032116E-4 45.0 15 AGCGATC 20 7.032116E-4 45.0 38 >>END_MODULE