##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548236_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1015172 Sequences flagged as poor quality 0 Sequence length 51 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.486947039516455 28.0 25.0 31.0 16.0 33.0 2 27.38280311119692 30.0 25.0 31.0 16.0 33.0 3 27.015748070277745 30.0 25.0 31.0 16.0 33.0 4 29.60106563222784 32.0 28.0 35.0 19.0 37.0 5 31.68747956011395 33.0 32.0 35.0 26.0 37.0 6 31.009347184516514 33.0 30.0 35.0 17.0 36.0 7 32.18417765659415 35.0 32.0 35.0 26.0 35.0 8 32.9287805416225 35.0 32.0 35.0 28.0 37.0 9 34.1197186289614 37.0 32.0 38.0 27.0 39.0 10 34.2265428912539 37.0 32.0 39.0 27.0 39.0 11 34.666415149354 37.0 34.0 39.0 27.0 39.0 12 34.257683427044874 37.0 32.0 39.0 27.0 39.0 13 34.44660806247611 37.0 33.0 39.0 27.0 39.0 14 34.99441079935223 37.0 33.0 39.0 27.0 41.0 15 35.81880607424161 38.0 34.0 40.0 29.0 41.0 16 35.66758046912248 38.0 34.0 40.0 27.0 41.0 17 35.1152188988664 37.0 33.0 39.0 27.0 41.0 18 34.91153814329 37.0 33.0 39.0 27.0 40.0 19 34.29048969041699 36.0 32.0 38.0 27.0 40.0 20 34.107956090199494 35.0 32.0 38.0 27.0 40.0 21 34.14312254475104 35.0 32.0 38.0 27.0 40.0 22 34.42538111768252 35.0 33.0 39.0 27.0 40.0 23 34.79396397851793 35.0 33.0 39.0 28.0 40.0 24 34.3805049784667 35.0 33.0 39.0 25.0 40.0 25 33.41720417820822 35.0 32.0 39.0 23.0 40.0 26 33.332566304035176 35.0 31.0 38.0 22.0 40.0 27 33.908075675846064 35.0 33.0 39.0 24.0 40.0 28 33.78783890808651 35.0 33.0 39.0 23.0 40.0 29 33.7467000665897 35.0 33.0 39.0 23.0 40.0 30 32.98894965582187 35.0 31.0 39.0 20.0 40.0 31 32.79050939151198 35.0 31.0 39.0 18.0 40.0 32 32.19035789009153 35.0 31.0 39.0 15.0 40.0 33 31.807567584606353 35.0 30.0 39.0 12.0 40.0 34 31.32555074411036 35.0 29.0 39.0 10.0 40.0 35 31.032193559318028 35.0 27.0 39.0 8.0 40.0 36 30.5786359355853 35.0 25.0 39.0 7.0 40.0 37 30.44965582187058 35.0 25.0 39.0 7.0 40.0 38 30.33030264822119 35.0 24.0 39.0 7.0 40.0 39 30.09797551547915 35.0 24.0 39.0 7.0 40.0 40 29.97905576591947 35.0 23.0 39.0 7.0 40.0 41 29.68214154842726 35.0 23.0 39.0 7.0 40.0 42 29.75474993400133 35.0 23.0 39.0 7.0 40.0 43 29.64632692785065 35.0 23.0 39.0 7.0 40.0 44 29.49668430571371 35.0 22.0 39.0 7.0 40.0 45 29.631973695097972 35.0 23.0 39.0 7.0 40.0 46 29.3611683537371 35.0 22.0 39.0 7.0 40.0 47 29.412104549770877 35.0 22.0 39.0 7.0 40.0 48 29.24802102500857 35.0 22.0 38.0 7.0 40.0 49 29.281495155500743 35.0 22.0 39.0 7.0 40.0 50 29.128296485718675 35.0 21.0 39.0 7.0 40.0 51 27.0387569791129 32.0 18.0 37.0 7.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 4.0 8 13.0 9 49.0 10 56.0 11 56.0 12 47.0 13 81.0 14 206.0 15 556.0 16 1402.0 17 3113.0 18 5937.0 19 9567.0 20 13957.0 21 18341.0 22 23228.0 23 28279.0 24 33524.0 25 38510.0 26 40139.0 27 37435.0 28 35575.0 29 36556.0 30 41931.0 31 50079.0 32 61082.0 33 74493.0 34 86440.0 35 95079.0 36 109344.0 37 106757.0 38 58315.0 39 5021.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.669187093418653 21.05574227815582 20.9241389636436 27.350931664781932 2 41.013936554593705 25.3167936073887 21.757396776112817 11.91187306190478 3 22.432257784887685 26.321155429818788 40.97758803434295 10.268998750950578 4 20.529624536531742 25.567687052046352 41.7115523280784 12.191136083343512 5 19.572742353019983 26.765021099872733 40.28401098533057 13.378225561776723 6 16.254880946282995 34.76543876308645 39.02609607041959 9.95358422021096 7 59.00468098016888 7.90732998940081 29.60266831630502 3.485320714125291 8 54.81839530641113 10.835503737297719 27.446186459043393 6.899914497247757 9 50.09082204788942 9.439188630104061 29.908921837875752 10.561067484130767 10 28.090116748688892 25.848821677508838 33.417982371460205 12.643079202342067 11 22.36054579913552 24.097689849601842 39.01407840247761 14.527685948785033 12 19.562497783626814 19.387453554668568 44.36154661476085 16.688502046943768 13 18.115255345892127 24.905730260487875 45.11373442135914 11.86527997226086 14 13.244356621341014 31.062913476731037 39.64599102418113 16.046738877746826 15 9.866111358469304 23.73981945916554 52.60822796531032 13.785841217054845 16 11.007297285583133 25.91570689498922 44.206991524588936 18.870004294838708 17 11.201944104053304 24.445808198019645 41.327380975834636 23.024866722092412 18 13.81716595808395 23.378501377106538 44.18876801172609 18.615564653083418 19 14.590729452742984 26.347554897101183 41.51562493843407 17.546090711721757 20 17.503142324650405 24.90986749043512 42.29903898058654 15.287951204327937 21 14.170111074773537 29.57193460812552 42.10872640301348 14.149227914087465 22 12.742372721075837 24.07523060131682 40.11320249179449 23.069194185812847 23 11.860453203989078 28.60007959242375 40.8232299551209 18.716237248466268 24 14.928997253667358 23.462034019850822 41.15539041659935 20.453578309882463 25 11.653394695677186 28.506696402186034 39.441493658217524 20.398415243919256 26 11.860354698514143 26.902534742881006 41.298814388103686 19.938296170501157 27 15.432852757956287 28.801917310564125 38.21165280366283 17.553577127816762 28 10.684297833273574 25.463566765040802 45.05049390645132 18.801641495234307 29 12.737053425429384 23.858124534561632 39.95992797279673 23.444894067212253 30 14.330576493441505 26.734188886218295 39.05535219647508 19.87988242386512 31 15.80382437655885 26.59992592388285 37.66691752727617 19.929332172282134 32 15.771810097205202 25.776420153432127 36.42377843360534 22.02799131575733 33 15.382516460264862 25.931861792878447 34.5763082512126 24.109313495644088 34 15.124826137836742 21.41755288758949 40.403695137375735 23.05392583719803 35 14.932641956239928 23.453168527106737 34.916447656160734 26.697741860492606 36 19.374253821027374 22.085420007644025 35.512208768563355 23.028117402765247 37 17.364052594043176 24.461175052109397 40.074095818245574 18.10067653560185 38 17.48491881178756 24.10428971642244 34.618074572584746 23.792716899205256 39 21.234529715161568 20.012569298601615 37.139420709003005 21.61348027723381 40 19.652827304141564 20.212239896293436 35.987005157746665 24.14792764181833 41 18.025812374651785 22.052223662591167 33.133006032475286 26.788957930281764 42 20.990728664699184 21.186459043393633 34.30256153637019 23.520250755536992 43 22.4644690751912 21.485915687193895 34.49435169606726 21.55526354154764 44 18.21395783177629 23.124554262725923 34.60418530061901 24.05730260487878 45 16.1836614879055 21.530834183763933 36.352361964277975 25.933142364052593 46 21.85550822914738 21.05485572888141 35.22565634197949 21.863979699991727 47 16.037971890477674 20.667138179540018 40.926069670952316 22.36882025903 48 16.434554932563152 21.479709842273035 35.40188263663694 26.683852588526868 49 19.408041198929837 18.414219462317718 39.1358311694964 23.041908169256047 50 17.97754469193398 18.533214076038345 38.52273309350534 24.96650813852234 51 16.262859889752672 19.332881521554967 32.81266622798895 31.59159236070341 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 269.0 1 688.5 2 1108.0 3 17222.5 4 33337.0 5 27202.5 6 21068.0 7 20875.5 8 20683.0 9 21154.5 10 21626.0 11 21655.5 12 21685.0 13 21239.0 14 20793.0 15 20236.5 16 19680.0 17 19248.0 18 18816.0 19 17905.5 20 16995.0 21 15844.0 22 14693.0 23 13799.0 24 12905.0 25 12450.5 26 11883.0 27 11770.0 28 12363.0 29 12956.0 30 13332.0 31 13708.0 32 14737.0 33 15766.0 34 17091.0 35 18416.0 36 20371.5 37 22327.0 38 26531.5 39 30736.0 40 33613.5 41 36491.0 42 46347.0 43 56203.0 44 69440.0 45 82677.0 46 114178.5 47 145680.0 48 127657.5 49 109635.0 50 97919.0 51 86203.0 52 68391.0 53 50579.0 54 40168.0 55 29757.0 56 24423.0 57 19089.0 58 16365.0 59 13641.0 60 11470.0 61 9299.0 62 7669.0 63 6039.0 64 4700.5 65 3362.0 66 2742.0 67 2122.0 68 1750.5 69 1379.0 70 1060.5 71 742.0 72 571.0 73 400.0 74 325.5 75 196.5 76 142.0 77 115.0 78 88.0 79 60.5 80 33.0 81 21.5 82 10.0 83 9.0 84 8.0 85 6.0 86 4.0 87 3.0 88 2.0 89 2.5 90 3.0 91 1.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1015172.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.937939947498734 #Duplication Level Percentage of deduplicated Percentage of total 1 83.05338985625617 35.66141466084128 2 7.703944248478803 6.615829910001223 3 2.8635419715583024 3.6886377963573755 4 1.4813034528962092 2.5441647481791985 5 0.8610039294190044 1.8484867507976823 6 0.5772950415530538 1.4872715895716286 7 0.4101375110064587 1.2327321872468344 8 0.2865049463314125 0.984154574419163 9 0.22957987804248045 0.8871918314887898 >10 2.1040058276988707 20.43946861571979 >50 0.3537273955280718 10.075231120137712 >100 0.06768483079872205 4.8538309397068895 >500 0.0034769604849327175 1.0401777218433421 >1k 0.0032451631192705367 3.0448911151424136 >5k 2.3179736566218117E-4 0.6016528876225244 >10k+ 9.271894626487247E-4 4.9948635509241335 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16949 1.6695692946613974 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGC 12289 1.2105337814675738 No Hit GAATCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTC 10691 1.0531220325225676 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCG 10256 1.0102721509261483 No Hit GCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGC 6045 0.5954655959778244 No Hit CTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGCT 4731 0.46602940191415837 No Hit GAACTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCT 3922 0.38633847269231225 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTC 2729 0.2688214410956961 No Hit CCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGC 2691 0.26507823304819284 No Hit GAATGACTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCT 2360 0.23247292084494056 No Hit AGAATGATACCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCC 1956 0.19267670897148462 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCATTCTCGTCGTA 1925 0.18962303924852142 No Hit AGAACTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTC 1796 0.17691583298199712 No Hit TCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGC 1676 0.16509517598988152 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCC 1664 0.16391311029066996 No Hit ACTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGC 1553 0.152979002572963 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCATTCTCGT 1413 0.13918823608216144 No Hit AAAACTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTC 1103 0.10865153885252943 No Hit AGAATGATACGGCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATG 1074 0.10579488007943481 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5890627401070951 0.0 2 0.0 0.0 0.0 2.0987576489501287 0.0 3 0.0 0.0 0.0 2.607538426985772 0.0 4 0.0 0.0 0.0 3.8332420515932277 0.0 5 0.0 0.0 0.0 7.130318803119077 0.0 6 0.0 0.0 0.0 8.571158384983038 0.0 7 0.0 0.0 0.0 9.844144637558955 0.0 8 0.0 0.0 0.0 12.823245715996896 0.0 9 0.0 0.0 0.0 13.761116342846336 0.0 10 0.0 0.0 0.0 16.672544160004414 0.0 11 0.0 0.0 0.0 19.062976520234994 0.0 12 0.0 0.0 0.0 22.40211510955779 0.0 13 0.0 0.0 0.0 23.51286284491692 0.0 14 0.0 0.0 0.0 23.849554558242346 0.0 15 0.0 0.0 0.0 24.54165402513072 0.0 16 0.0 0.0 0.0 25.6680641310044 0.0 17 0.0 0.0 0.0 26.794769753302887 0.0 18 1.970109498685937E-4 0.0 0.0 29.036458846382683 0.0 19 1.970109498685937E-4 0.0 0.0 29.863116792031303 0.0 20 1.970109498685937E-4 0.0 0.0 30.800888913405807 0.0 21 1.970109498685937E-4 0.0 0.0 31.42915683253675 0.0 22 1.970109498685937E-4 0.0 0.0 32.0160524521953 0.0 23 1.970109498685937E-4 0.0 0.0 32.56738759540255 0.0 24 1.970109498685937E-4 0.0 0.0 33.01736060490242 0.0 25 1.970109498685937E-4 0.0 0.0 33.381141323834775 0.0 26 1.970109498685937E-4 0.0 0.0 33.71862108095968 0.0 27 1.970109498685937E-4 0.0 0.0 34.03866536902121 0.0 28 1.970109498685937E-4 0.0 0.0 34.359497700882216 0.0 29 1.970109498685937E-4 0.0 0.0 34.71756510226838 0.0 30 1.970109498685937E-4 0.0 0.0 35.16182479422206 0.0 31 1.970109498685937E-4 0.0 0.0 35.552990035186156 0.0 32 1.970109498685937E-4 0.0 0.0 35.89539506605777 0.0 33 2.9551642480289057E-4 0.0 0.0 36.23977020642808 0.0 34 2.9551642480289057E-4 0.0 0.0 36.61566709877735 0.0 35 2.9551642480289057E-4 0.0 0.0 36.96762716071759 0.0 36 2.9551642480289057E-4 0.0 0.0 37.284519273581225 0.0 37 2.9551642480289057E-4 0.0 0.0 37.613035032487105 0.0 38 2.9551642480289057E-4 0.0 0.0 37.927760024902184 0.0 39 2.9551642480289057E-4 0.0 0.0 38.27499182404558 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAC 30 2.1652504E-6 45.000004 25 CAGGTCA 30 2.1652504E-6 45.000004 15 ATCGTCC 30 2.1652504E-6 45.000004 10 CTAACGG 60 0.0 45.000004 2 ATGCGAG 60 0.0 45.000004 1 CACGTGT 30 2.1652504E-6 45.000004 41 CGTCCAG 30 2.1652504E-6 45.000004 12 CTCACGT 25 3.8904836E-5 45.0 45 GTACCGC 25 3.8904836E-5 45.0 18 GCGACGC 20 7.0328976E-4 45.0 9 TCCGCAA 20 7.0328976E-4 45.0 32 CGACGGT 25 3.8904836E-5 45.0 28 ACGCATT 20 7.0328976E-4 45.0 38 CGCGGAC 55 1.8189894E-12 45.0 4 TTCCGAT 25 3.8904836E-5 45.0 28 TCTAGCG 20 7.0328976E-4 45.0 1 CTGCGTA 20 7.0328976E-4 45.0 5 GTTCGCA 20 7.0328976E-4 45.0 32 ACGTGTG 25 3.8904836E-5 45.0 42 CCGAGTA 20 7.0328976E-4 45.0 17 >>END_MODULE