SRR3548228_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548228_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	982202
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGC	19435	1.9787172088837124	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCG	18971	1.9314764172746544	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTC	15880	1.616775367999658	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10291	1.0477478156224482	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC	5392	0.5489705783535362	Illumina Single End Adapter 1 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCT	4617	0.4700662389203036	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTC	4027	0.40999712890016515	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCT	3710	0.3777227087707009	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTA	2892	0.29444045114955986	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTGTCAGGT	2624	0.2671548215132936	No Hit
CTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGCT	1567	0.15953948373145238	Illumina Single End Adapter 1 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC	1469	0.1495619027450565	Illumina Single End Adapter 1 (95% over 21bp)
GAATGCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTT	1081	0.11005882700299938	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGT	1066	0.10853164623977553	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCCGAC	65	0.0	45.000004	13
GCGAGAC	75	0.0	45.0	21
GTGCATC	20	7.0327864E-4	45.0	25
ACTATCG	20	7.0327864E-4	45.0	26
TCGCATC	45	3.8380676E-10	45.0	22
GGTACGT	20	7.0327864E-4	45.0	37
ACACGAT	20	7.0327864E-4	45.0	23
CGAACAG	20	7.0327864E-4	45.0	15
GGTAAGT	40	6.8139343E-9	45.0	8
TACTTCG	20	7.0327864E-4	45.0	29
AGTCAAT	25	3.8903905E-5	45.0	32
CAACGTA	35	1.2116834E-7	45.0	38
TACCAGG	40	6.8139343E-9	45.0	2
CGAAACG	20	7.0327864E-4	45.0	34
ACGTTCA	25	3.8903905E-5	45.0	20
CTATCCC	25	3.8903905E-5	45.0	38
ACGCAAT	25	3.8903905E-5	45.0	16
TAGGTGA	35	1.2116834E-7	45.0	32
CGGCATA	20	7.0327864E-4	45.0	6
CTATACG	45	3.8380676E-10	45.0	1