SRR3548226_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548226_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	564210
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGC	11529	2.043388100175467	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCG	11100	1.967352581485617	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTC	7513	1.3315963914145441	No Hit
GCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCTGC	4786	0.8482657166657805	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3169	0.5616703000655784	No Hit
GAACTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCT	2564	0.45444072242604705	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCT	2549	0.45178213785647187	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTC	2447	0.4337037627833608	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTGGTTCTT	2148	0.38070931036316263	No Hit
CTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCTGCT	2034	0.3605040676343914	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTA	1614	0.28606369968628703	No Hit
CCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCTGC	1363	0.2415767178887294	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGGGTCTTCGTATGCCGTCTTC	805	0.1426773719005335	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGT	754	0.13363818436397795	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTAT	635	0.11254674677868169	No Hit
ACTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCTGC	614	0.10882472838127648	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	613	0.10864748940997146	No Hit
TCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCTGC	570	0.10102621364385601	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGTATA	30	2.1635296E-6	45.000004	16
CCCTAAT	30	2.1635296E-6	45.000004	40
CGGTTGA	30	2.1635296E-6	45.000004	30
GCCGATC	30	2.1635296E-6	45.000004	9
CGCTATT	30	2.1635296E-6	45.000004	30
AGCGAAG	30	2.1635296E-6	45.000004	1
TGAGGGT	75	0.0	45.000004	4
GACGCAC	30	2.1635296E-6	45.000004	9
TCCCCGT	30	2.1635296E-6	45.000004	24
GTAAGGT	30	2.1635296E-6	45.000004	24
ATCGGCC	30	2.1635296E-6	45.000004	15
AGGTGTC	30	2.1635296E-6	45.000004	22
AATCGAG	30	2.1635296E-6	45.000004	1
TGATCCA	20	7.0302305E-4	45.0	28
AAGTATC	20	7.0302305E-4	45.0	21
GTGCAGT	20	7.0302305E-4	45.0	3
CTATGGT	20	7.0302305E-4	45.0	28
AGACTGC	35	1.2104647E-7	45.0	37
GTCGCGG	20	7.0302305E-4	45.0	36
CGAACGT	20	7.0302305E-4	45.0	17