SRR3548220_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548220_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	780466
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGC	20910	2.679168599272742	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCG	18346	2.350646921198361	No Hit
GAATCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTC	16804	2.1530726514672005	No Hit
GCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGC	5124	0.6565308418303937	No Hit
GAACTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCT	4646	0.5952853807853257	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTC	3861	0.4947044458054547	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3822	0.4897074312013592	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	3238	0.41488034071951885	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCT	3217	0.4121896405480828	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTACAACGTT	2470	0.3164775915927151	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTACAACGTTCGTA	2205	0.2825235180007841	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTT	1248	0.15990446733105607	No Hit
CTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGCT	1222	0.15657312426165906	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTACAACGTTCGT	924	0.11839080754318573	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	853	0.10929367839214008	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTCA	55	1.8189894E-12	45.000004	6
TCCGCGA	20	7.0318923E-4	45.000004	34
ACACCTA	20	7.0318923E-4	45.000004	18
TAGGTCA	20	7.0318923E-4	45.000004	16
TAAGTCG	20	7.0318923E-4	45.000004	37
ATAGACG	20	7.0318923E-4	45.000004	1
CGACAGG	55	1.8189894E-12	45.000004	2
TAACGAT	20	7.0318923E-4	45.000004	11
TCGATAG	20	7.0318923E-4	45.000004	1
CCTCGAC	20	7.0318923E-4	45.000004	15
TGACCGA	20	7.0318923E-4	45.000004	45
CTACGTA	20	7.0318923E-4	45.000004	30
TTCGGTA	20	7.0318923E-4	45.000004	35
CTCGACC	20	7.0318923E-4	45.000004	16
CGAGACG	20	7.0318923E-4	45.000004	31
GCAATCT	20	7.0318923E-4	45.000004	39
CCGAACC	20	7.0318923E-4	45.000004	31
GAACCGT	20	7.0318923E-4	45.000004	16
CCTATTA	20	7.0318923E-4	45.000004	16
AGTAGAC	20	7.0318923E-4	45.000004	27