SRR3548212_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548212_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	438420
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGC	14827	3.3819168833538615	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCG	13389	3.0539208977692622	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTC	12498	2.850691118105926	No Hit
GCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC	4025	0.9180694311390905	No Hit
GAACTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCT	4013	0.9153323297294831	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTC	3309	0.7547557136991926	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2916	0.6651156425345559	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCT	2520	0.5747912960175174	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTCTGTATTCGTA	1994	0.4548150175630674	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTCTGTATT	1980	0.4516217325851923	No Hit
CTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGCT	1296	0.2956069522375804	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGTCTGTATTCGT	843	0.19228137402490764	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTT	807	0.18407006979608595	No Hit
CCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC	786	0.1792801423292733	No Hit
TGAATGATACCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCC	652	0.14871584325532594	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTAT	640	0.1459787418457187	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTT	527	0.120204370238584	No Hit
TCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC	491	0.11199306600976233	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	45	3.8380676E-10	45.000004	25
TATCATC	25	3.886844E-5	45.000004	15
CTTCGGA	25	3.886844E-5	45.000004	13
AAATCTC	25	3.886844E-5	45.000004	27
CGCATTG	25	3.886844E-5	45.000004	27
GACGTAG	25	3.886844E-5	45.000004	1
GGGTACG	25	3.886844E-5	45.000004	7
ATAGCGG	50	2.1827873E-11	45.000004	2
CGCGCAT	25	3.886844E-5	45.000004	25
GCCGGAT	25	3.886844E-5	45.000004	9
GTTAGTA	25	3.886844E-5	45.000004	42
TTCGTAG	50	2.1827873E-11	45.000004	1
ATAGACC	25	3.886844E-5	45.000004	15
CTAAGAG	25	3.886844E-5	45.000004	1
CACGACG	45	3.8380676E-10	45.000004	26
ACGGGTA	25	3.886844E-5	45.000004	5
AGAACCG	25	3.886844E-5	45.000004	1
AGTATGA	25	3.886844E-5	45.000004	33
ATACTCG	30	2.1624182E-6	45.000004	44
CGTTAGT	25	3.886844E-5	45.000004	41