##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548212_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 438420 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.782966105560877 28.0 25.0 31.0 16.0 33.0 2 27.632993476574974 30.0 25.0 31.0 16.0 33.0 3 27.55689521463437 30.0 25.0 31.0 16.0 33.0 4 30.81117193558688 33.0 28.0 35.0 19.0 37.0 5 32.02063090187492 33.0 32.0 35.0 26.0 37.0 6 31.201596642488937 35.0 30.0 35.0 17.0 37.0 7 32.02157976369691 35.0 31.0 35.0 26.0 35.0 8 32.847185347383785 35.0 32.0 35.0 28.0 37.0 9 34.10087359153323 35.0 32.0 37.0 27.0 39.0 10 33.76522512659094 35.0 32.0 37.0 27.0 39.0 11 33.92383787235984 35.0 32.0 39.0 27.0 39.0 12 33.35054970119976 35.0 31.0 37.0 25.0 39.0 13 33.507615984672235 35.0 32.0 38.0 25.0 39.0 14 34.26970484923133 37.0 32.0 39.0 25.0 40.0 15 35.030721682405 37.0 33.0 39.0 27.0 40.0 16 35.11346197709958 36.0 33.0 39.0 27.0 41.0 17 34.5373044112951 36.0 32.0 39.0 27.0 40.0 18 34.444861092103466 36.0 32.0 39.0 27.0 40.0 19 33.798045253409974 36.0 32.0 38.0 25.0 40.0 20 33.47491674649879 35.0 32.0 38.0 25.0 40.0 21 34.1779024679531 35.0 32.0 39.0 27.0 40.0 22 34.69361799187993 36.0 33.0 39.0 27.0 40.0 23 34.871664157657044 36.0 33.0 39.0 28.0 40.0 24 34.65310204826422 36.0 33.0 39.0 27.0 40.0 25 33.95844395784864 35.0 32.0 39.0 24.0 40.0 26 33.87274303179599 35.0 32.0 39.0 24.0 40.0 27 34.24239085808129 35.0 33.0 39.0 25.0 40.0 28 33.938841749920165 35.0 33.0 39.0 24.0 40.0 29 34.05147347292551 36.0 33.0 39.0 24.0 40.0 30 33.41950869029697 35.0 32.0 39.0 23.0 40.0 31 33.55593951005885 35.0 32.0 39.0 23.0 40.0 32 33.032658181652295 35.0 31.0 39.0 20.0 40.0 33 32.84576433556863 35.0 31.0 39.0 18.0 40.0 34 32.605558596779346 35.0 31.0 39.0 15.0 40.0 35 32.273767163906754 35.0 31.0 39.0 14.0 40.0 36 32.143588339947996 35.0 31.0 39.0 12.0 40.0 37 31.902650426531636 35.0 30.0 39.0 10.0 40.0 38 31.823675927193104 35.0 30.0 39.0 10.0 40.0 39 31.674645317275672 35.0 30.0 39.0 10.0 40.0 40 31.24853565074586 35.0 29.0 39.0 10.0 40.0 41 30.924513024040873 35.0 28.0 38.0 10.0 40.0 42 31.321880844851968 35.0 30.0 39.0 10.0 40.0 43 31.162795949089915 35.0 29.0 39.0 10.0 40.0 44 31.351881757219104 35.0 30.0 39.0 10.0 40.0 45 31.3693832398157 35.0 30.0 39.0 10.0 40.0 46 31.103343825555402 35.0 29.0 38.0 10.0 40.0 47 31.111178778340403 35.0 29.0 38.0 10.0 40.0 48 30.90967337256512 35.0 28.0 38.0 9.0 40.0 49 31.042892660006387 35.0 29.0 38.0 10.0 40.0 50 30.806256557638793 35.0 28.0 38.0 8.0 40.0 51 28.36634505725104 32.0 23.0 36.0 8.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 7.0 9 14.0 10 23.0 11 13.0 12 24.0 13 21.0 14 66.0 15 124.0 16 313.0 17 797.0 18 1573.0 19 2606.0 20 3868.0 21 5118.0 22 6917.0 23 8408.0 24 10671.0 25 13084.0 26 14139.0 27 14465.0 28 15405.0 29 17681.0 30 21122.0 31 26080.0 32 32842.0 33 39539.0 34 43589.0 35 43002.0 36 46519.0 37 43648.0 38 24429.0 39 2311.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.592354363395835 18.53656311299667 20.972127183978834 19.898955339628664 2 31.96250171068838 34.476529355412616 22.346380183385794 11.214588750513206 3 22.49327129236805 34.425436795766615 32.413667259705306 10.667624652160029 4 19.552940103097484 22.75808585374755 44.19894165412162 13.490032389033345 5 28.24734273071484 23.89238629624561 33.13854294968295 14.721728023356597 6 17.75762967017928 41.8571233064185 30.47579946170339 9.909447561698828 7 62.568085397563976 5.504767118288399 28.910633638976325 3.016513845171297 8 58.537247388349066 15.49952100725332 19.482459741800103 6.480771862597509 9 55.16855982847498 6.138178002828338 20.088955795812236 18.604306372884448 10 39.22699694357009 21.013867980475343 25.13799552940103 14.621139546553533 11 33.75484695041285 20.658044797226406 30.274394416313122 15.312713836047626 12 27.559417909766893 16.525705944071895 35.17380593951006 20.74107020665116 13 19.577117832215684 26.77067652023174 40.00182473427307 13.650380913279502 14 15.756808539756397 34.56274804981525 31.519775557684408 18.160667852743945 15 10.679713516719127 20.674239313899914 54.01555585967793 14.630491309703025 16 11.829524200538296 21.738515578668856 40.68974955522102 25.742210665571825 17 12.024770767756946 21.955202773596096 38.637835865152134 27.38219059349482 18 15.01094840563843 22.90611742165047 39.68956708179371 22.393367090917383 19 17.540714383467908 26.492176451804205 33.2181469823457 22.74896218238219 20 21.286893846083665 23.133753022216137 38.999589434788554 16.579763696911638 21 16.854158113224763 31.483508964007118 35.10857168924775 16.55376123352037 22 15.834587838146069 22.600930614479267 35.2016331371744 26.36284841020026 23 15.700241777291183 32.39633228411113 33.219971716618765 18.683454221978923 24 18.39514620683363 21.72528625518909 35.18452625336435 24.695041284612927 25 13.282012681903199 32.14885269832581 33.46357374207381 21.105560877697187 26 15.43702385840062 25.612654532183747 35.357876009306146 23.592445600109485 27 19.681355777564892 28.418411568815294 30.922859358605905 20.977373295013912 28 13.238447151133617 25.698645134802245 40.3400848501437 20.72282286392044 29 21.472560558368688 19.666985995164453 35.78691665526208 23.07353679120478 30 17.145431321563798 24.940239952556908 38.92226631996715 18.99206240591214 31 23.52561470735824 22.14953697367821 29.319830299712606 25.005018019250947 32 27.05830026002463 25.832991195657133 31.451576114228363 15.657132430089868 33 22.74873409059806 21.896583185073673 30.405319100406004 24.949363623922267 34 24.08717667989599 22.602527256968205 33.0299712604352 20.280324802700605 35 17.734136216413486 24.095616075908946 34.500935176314954 23.66931253136262 36 26.94904429542448 20.20277359609507 32.145659413347936 20.702522695132522 37 18.3579672460198 22.26221431504037 42.467496920760915 16.912321518178917 38 22.414807718625976 25.87381962501711 26.7052141781853 25.006158478171614 39 22.906345513434605 20.658729072578804 38.17686236941745 18.258063044569134 40 24.93111628119155 23.101592080653255 33.16272067880115 18.804570959354045 41 16.26659367729574 23.377811231239452 36.24515304958715 24.110442041877654 42 20.732858902422336 24.592856165320924 33.70694767574472 20.96733725651202 43 22.86141143196022 21.254960996304913 33.4339218101364 22.44970576159847 44 20.64618402445144 22.287304411295107 33.68436658911546 23.382144975137994 45 17.71588887368277 22.554399890515946 31.3268099083071 28.402901327494185 46 26.92007663883947 25.077779298389675 29.382327448565306 18.619816614205558 47 18.43871173760321 20.363350212125358 40.52027735960951 20.677660690661924 48 21.40299256420784 23.152228456730988 30.84439578486383 24.600383194197345 49 18.72017699922449 19.346745130240407 39.03973358879613 22.893344281738973 50 20.991514985630218 21.151863509876375 33.67113726563569 24.185484238857715 51 19.2431914602436 20.560193421832945 28.242096619679756 31.954518498243694 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 58.0 1 162.0 2 266.0 3 3732.0 4 7198.0 5 6033.0 6 4868.0 7 5110.5 8 5353.0 9 5575.0 10 5797.0 11 5861.0 12 5925.0 13 5714.5 14 5504.0 15 5189.0 16 4874.0 17 4658.0 18 4442.0 19 4278.5 20 4115.0 21 4001.5 22 3888.0 23 3483.5 24 3079.0 25 2995.5 26 3057.0 27 3202.0 28 3289.0 29 3376.0 30 3654.5 31 3933.0 32 5029.0 33 6125.0 34 6177.0 35 6229.0 36 7274.0 37 8319.0 38 9593.0 39 10867.0 40 15643.0 41 20419.0 42 27153.0 43 33887.0 44 63131.5 45 92376.0 46 67977.0 47 43578.0 48 40086.0 49 36594.0 50 31286.5 51 25979.0 52 23441.5 53 20904.0 54 17347.0 55 13790.0 56 13277.0 57 12764.0 58 12255.0 59 11746.0 60 10943.0 61 10140.0 62 8324.0 63 6508.0 64 5157.0 65 3806.0 66 2971.0 67 2136.0 68 1671.0 69 1206.0 70 1037.5 71 869.0 72 737.0 73 605.0 74 443.5 75 244.5 76 207.0 77 189.5 78 172.0 79 115.0 80 58.0 81 41.0 82 24.0 83 22.5 84 21.0 85 19.0 86 17.0 87 9.5 88 2.0 89 1.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 438420.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.49108816509241 #Duplication Level Percentage of deduplicated Percentage of total 1 83.97406011062063 29.803307709668058 2 7.4937150992427135 5.319202065426146 3 2.454823796241033 2.61373103346472 4 1.1606395880502407 1.647694477895505 5 0.708180297716538 1.2567044691519518 6 0.44526904727188193 0.9481849808347838 7 0.29265315756802485 0.7270605311927614 8 0.2440812881753717 0.6930168414465155 9 0.18918948694851373 0.604308668507847 >10 2.248860145002354 19.650965053141423 >50 0.6933045873464974 16.8405030841819 >100 0.08413574013894465 4.381188171793364 >500 0.0039132902390206815 0.9849398040355453 >1k 0.0052177203186942415 5.104789071303379 >5k 0.0 0.0 >10k+ 0.0019566451195103408 9.424404037956096 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGC 14827 3.3819168833538615 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCG 13389 3.0539208977692622 No Hit GAATCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTC 12498 2.850691118105926 No Hit GCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC 4025 0.9180694311390905 No Hit GAACTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCT 4013 0.9153323297294831 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTC 3309 0.7547557136991926 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2916 0.6651156425345559 No Hit GAATGACTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCT 2520 0.5747912960175174 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTCTGTATTCGTA 1994 0.4548150175630674 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTCTGTATT 1980 0.4516217325851923 No Hit CTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGCT 1296 0.2956069522375804 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGTCTGTATTCGT 843 0.19228137402490764 No Hit GAATGCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTT 807 0.18407006979608595 No Hit CCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC 786 0.1792801423292733 No Hit TGAATGATACCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCC 652 0.14871584325532594 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTAT 640 0.1459787418457187 No Hit GAATCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTT 527 0.120204370238584 No Hit TCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC 491 0.11199306600976233 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.36471876283016286 0.0 2 0.0 0.0 0.0 1.9045663975183613 0.0 3 0.0 0.0 0.0 2.2284567309885497 0.0 4 0.0 0.0 0.0 3.663610236759272 0.0 5 0.0 0.0 0.0 7.969526937639706 0.0 6 0.0 0.0 0.0 8.945531681948816 0.0 7 0.0 0.0 0.0 10.172209297021121 0.0 8 0.0 0.0 0.0 12.444459650563386 0.0 9 0.0 0.0 0.0 13.037270197527485 0.0 10 0.0 0.0 0.0 17.57675288536107 0.0 11 0.0 0.0 0.0 18.976095981022763 0.0 12 0.0 0.0 0.0 24.193467451302404 0.0 13 0.0 0.0 0.0 25.54582363943251 0.0 14 0.0 0.0 0.0 25.980338488207654 0.0 15 0.0 0.0 0.0 26.846174900780074 0.0 16 0.0 0.0 0.0 27.670954792208384 0.0 17 0.0 0.0 0.0 28.277222754436384 0.0 18 2.280917841339355E-4 0.0 0.0 29.47082706080927 0.0 19 2.280917841339355E-4 0.0 0.0 30.380000912367137 0.0 20 2.280917841339355E-4 0.0 0.0 30.90757720906893 0.0 21 2.280917841339355E-4 0.0 0.0 31.24560923315542 0.0 22 2.280917841339355E-4 0.0 0.0 31.626522512659093 0.0 23 2.280917841339355E-4 0.0 0.0 31.931937411614435 0.0 24 2.280917841339355E-4 0.0 0.0 32.19834861548287 0.0 25 2.280917841339355E-4 0.0 0.0 32.387208612745766 0.0 26 2.280917841339355E-4 0.0 0.0 32.59591259522832 0.0 27 2.280917841339355E-4 0.0 0.0 32.81898636011131 0.0 28 2.280917841339355E-4 0.0 0.0 33.005565439532866 0.0 29 2.280917841339355E-4 0.0 0.0 33.20218055745632 0.0 30 2.280917841339355E-4 0.0 0.0 33.445098307558965 0.0 31 2.280917841339355E-4 0.0 0.0 33.661785502486204 0.0 32 2.280917841339355E-4 0.0 0.0 33.85908489576205 0.0 33 2.280917841339355E-4 0.0 0.0 34.04520779161535 0.0 34 2.280917841339355E-4 0.0 0.0 34.26121071119018 0.0 35 2.280917841339355E-4 0.0 0.0 34.472423703298205 0.0 36 2.280917841339355E-4 0.0 0.0 34.66128370056111 0.0 37 4.56183568267871E-4 0.0 0.0 34.85037178960814 0.0 38 4.56183568267871E-4 0.0 0.0 35.03193284977875 0.0 39 4.56183568267871E-4 0.0 0.0 35.208475890698416 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAC 45 3.8380676E-10 45.000004 25 TATCATC 25 3.886844E-5 45.000004 15 CTTCGGA 25 3.886844E-5 45.000004 13 AAATCTC 25 3.886844E-5 45.000004 27 CGCATTG 25 3.886844E-5 45.000004 27 GACGTAG 25 3.886844E-5 45.000004 1 GGGTACG 25 3.886844E-5 45.000004 7 ATAGCGG 50 2.1827873E-11 45.000004 2 CGCGCAT 25 3.886844E-5 45.000004 25 GCCGGAT 25 3.886844E-5 45.000004 9 GTTAGTA 25 3.886844E-5 45.000004 42 TTCGTAG 50 2.1827873E-11 45.000004 1 ATAGACC 25 3.886844E-5 45.000004 15 CTAAGAG 25 3.886844E-5 45.000004 1 CACGACG 45 3.8380676E-10 45.000004 26 ACGGGTA 25 3.886844E-5 45.000004 5 AGAACCG 25 3.886844E-5 45.000004 1 AGTATGA 25 3.886844E-5 45.000004 33 ATACTCG 30 2.1624182E-6 45.000004 44 CGTTAGT 25 3.886844E-5 45.000004 41 >>END_MODULE