##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548210_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1297665 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.53227682028875 28.0 25.0 31.0 16.0 33.0 2 27.422539715566035 30.0 25.0 31.0 16.0 33.0 3 27.460132622826386 30.0 25.0 31.0 16.0 33.0 4 30.87914908701398 33.0 28.0 35.0 19.0 37.0 5 31.899961854561848 33.0 32.0 35.0 26.0 37.0 6 31.036704388266617 35.0 30.0 35.0 17.0 37.0 7 31.727649277741172 33.0 30.0 35.0 25.0 35.0 8 33.023004396358075 35.0 32.0 35.0 28.0 37.0 9 34.17178393499093 35.0 32.0 37.0 27.0 39.0 10 33.57145796488308 35.0 32.0 37.0 27.0 39.0 11 33.75619131285809 35.0 32.0 39.0 26.0 39.0 12 33.27556495705748 35.0 31.0 37.0 25.0 39.0 13 33.33099991137929 35.0 32.0 37.0 25.0 39.0 14 34.1221732881753 36.0 32.0 39.0 24.0 40.0 15 34.95865805119195 37.0 33.0 39.0 27.0 40.0 16 35.135792365518064 37.0 33.0 39.0 27.0 41.0 17 34.61594016945822 36.0 33.0 39.0 27.0 40.0 18 34.52253547718402 36.0 33.0 39.0 27.0 40.0 19 34.001642950992746 36.0 32.0 39.0 25.0 40.0 20 33.86708202810433 35.0 32.0 38.0 25.0 40.0 21 34.409178023603936 36.0 33.0 39.0 27.0 40.0 22 34.7654248207357 36.0 33.0 39.0 27.0 40.0 23 35.10671783549684 36.0 33.0 39.0 29.0 40.0 24 34.85479996763417 36.0 33.0 39.0 27.0 40.0 25 34.14321261650734 35.0 33.0 39.0 25.0 40.0 26 34.098419083507686 36.0 32.0 39.0 25.0 40.0 27 34.53692748128369 36.0 33.0 39.0 26.0 40.0 28 34.39648137231104 36.0 33.0 39.0 25.0 40.0 29 34.43135169708669 36.0 33.0 39.0 25.0 40.0 30 34.039991831481935 36.0 33.0 39.0 24.0 40.0 31 34.183368588965564 36.0 33.0 39.0 24.0 40.0 32 33.7313112398038 36.0 33.0 39.0 23.0 40.0 33 33.68248507896876 36.0 33.0 39.0 22.0 40.0 34 33.64106067436511 36.0 33.0 39.0 21.0 40.0 35 33.60148651616557 37.0 33.0 40.0 19.0 40.0 36 33.38757306392636 37.0 33.0 40.0 18.0 40.0 37 33.32030840008785 37.0 33.0 40.0 18.0 40.0 38 33.287529524183824 36.0 32.0 40.0 18.0 40.0 39 33.00020421295172 36.0 32.0 39.0 16.0 40.0 40 32.717966501369766 36.0 31.0 39.0 15.0 40.0 41 32.4691511291435 36.0 31.0 39.0 15.0 40.0 42 32.8288633815353 36.0 32.0 39.0 15.0 40.0 43 32.725706557547596 36.0 31.0 39.0 15.0 40.0 44 32.63357106803374 36.0 31.0 39.0 15.0 40.0 45 32.72074148566849 36.0 32.0 39.0 15.0 40.0 46 32.31486477634829 35.0 31.0 39.0 15.0 40.0 47 32.3503531342835 35.0 31.0 39.0 15.0 40.0 48 32.20991935514944 35.0 31.0 39.0 13.0 40.0 49 32.36655531281186 35.0 31.0 39.0 14.0 40.0 50 32.2043439562599 35.0 31.0 39.0 13.0 40.0 51 30.105528006072447 34.0 27.0 37.0 10.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 39.0 9 88.0 10 82.0 11 70.0 12 57.0 13 106.0 14 150.0 15 389.0 16 803.0 17 1634.0 18 3164.0 19 5448.0 20 8066.0 21 11090.0 22 15086.0 23 19701.0 24 25175.0 25 30871.0 26 35103.0 27 38008.0 28 41280.0 29 48262.0 30 60356.0 31 75987.0 32 96548.0 33 118577.0 34 132989.0 35 133633.0 36 149782.0 37 146845.0 38 88708.0 39 9565.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.58096658228433 18.72748359553506 21.669306022740848 19.022243799439764 2 30.488454262078424 32.91697009628833 23.86725387522974 12.727321766403502 3 24.660833111781546 31.94260460134164 31.596752628760115 11.799809658116695 4 22.459109246223026 22.53840552068523 40.997715126785415 14.004770106306328 5 28.396543021504012 25.447553875615046 30.327858114382373 15.828044988498572 6 17.1884114929508 41.07439131054625 31.197728227238926 10.539468969264023 7 69.92051107180976 3.640770152543222 24.06576427660452 2.372954499042511 8 67.26851691307078 12.372684783823251 15.520492577051858 4.838305726054105 9 63.89476482759417 4.315751754112194 16.152627989504225 15.636855428789403 10 39.79925481537993 23.628440313948516 23.0589558938555 13.51334897681605 11 35.19352066981848 21.18335625912697 28.451641987724102 15.171481083330443 12 29.26571958093961 18.783815545614623 32.73487379254276 19.215591080903007 13 20.014872867804865 29.036692829042938 38.033236621161855 12.915197681990346 14 17.418131798268426 34.65940747419403 29.758296632798142 18.164164094739395 15 13.70754393468268 21.71847125413724 49.98562803188805 14.588356779292036 16 14.255605260217392 22.34698477650241 39.66401189829424 23.733398064985956 17 14.364416085815677 22.07734661873442 36.720648241264115 26.83758905418579 18 17.355172559944208 22.868459887567287 38.45722894583733 21.31913860665118 19 20.49905021712075 25.29751515221571 32.726011721052814 21.477422909610723 20 23.78179268147018 23.06874270324005 37.11304535454066 16.036419260749117 21 19.805419734677283 30.65544651354548 32.49120535731487 17.04792839446236 22 17.873102842413104 21.82389137412198 34.74741169716375 25.555594086301163 23 17.828792484963376 31.276176825297746 31.921181506783334 18.97384918295554 24 20.37837192187506 22.439535627453928 34.50428269237438 22.677809758296632 25 14.916715793367317 30.704765867924312 33.77782401467251 20.600694324035864 26 15.55070068160889 26.190657835419774 33.26960348009694 24.989038002874395 27 19.16750471038365 31.017250214808907 30.13705386212929 19.678191212678158 28 14.059714949543988 26.34570555574821 39.34150955755145 20.253069937156354 29 18.01058054274408 23.085465046834123 33.32824727491301 25.57570713550878 30 16.655454219694604 30.574377824785287 33.9363395021057 18.8338284534144 31 23.594610319304287 23.24837303926668 28.181695583991246 24.97532105743778 32 23.913105462503808 27.081796919852195 28.904994740553224 20.100102877090777 33 20.32566186188269 24.698593242477834 29.584985339051293 25.390759556588176 34 20.1284615058586 23.55962440229181 32.327141442514055 23.984772649335536 35 16.104695741967305 25.944831678437808 32.01658363290988 25.93388894668501 36 21.13634874948465 21.885694690077948 28.397853066854694 28.580103493582705 37 16.461798692266495 28.652387172344174 33.56582785233477 21.31998628305456 38 19.02478682864992 26.402345751792645 28.22754717126531 26.345320248292126 39 20.739019700770232 23.870644580843283 31.607310053056835 23.78302566532965 40 19.763267098981633 22.37056559281479 36.61700053557737 21.249166772626218 41 15.692031456500716 24.61790986117372 32.32089946172548 27.369159220600075 42 19.740919266528724 22.805577710734283 34.29814320336913 23.155359819367867 43 21.47426338847083 23.04901496148852 26.959192087326084 28.517529562714568 44 19.66308716039964 25.086983158211098 31.535488743242666 23.714440938146595 45 17.137242662782768 26.450432122312 29.113291951312547 27.29903326359268 46 24.874062257978753 27.518966759525764 27.51056705698312 20.096403925512362 47 18.009501681867047 23.86324667768646 37.456970789841755 20.67028085060474 48 21.934012245070956 24.92222568998933 29.192588225774756 23.95117383916496 49 18.905726824719785 21.281378475954888 36.340658028073506 23.472236671251824 50 20.29815090951825 24.91197651165748 31.201273055834903 23.58859952298937 51 19.136371867932016 24.700673902740693 26.712210007975862 29.450744221351428 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 70.0 1 316.0 2 562.0 3 9201.0 4 17840.0 5 14862.0 6 11884.0 7 12260.5 8 12637.0 9 12943.0 10 13249.0 11 13305.0 12 13361.0 13 12626.5 14 11892.0 15 11243.0 16 10594.0 17 10266.0 18 9938.0 19 9660.0 20 9382.0 21 8824.5 22 8267.0 23 8340.0 24 8413.0 25 8414.5 26 9298.0 27 10180.0 28 12049.5 29 13919.0 30 17184.0 31 20449.0 32 21894.5 33 23340.0 34 25760.0 35 28180.0 36 31966.0 37 35752.0 38 39060.5 39 42369.0 40 52427.0 41 62485.0 42 75086.5 43 87688.0 44 95376.0 45 103064.0 46 173276.0 47 243488.0 48 179547.0 49 115606.0 50 107118.0 51 98630.0 52 84396.0 53 70162.0 54 60960.0 55 51758.0 56 46145.0 57 40532.0 58 37341.0 59 34150.0 60 31115.5 61 28081.0 62 25243.0 63 22405.0 64 17683.0 65 12961.0 66 10099.5 67 7238.0 68 5336.0 69 3434.0 70 2718.0 71 2002.0 72 1513.0 73 1024.0 74 992.0 75 856.5 76 753.0 77 578.0 78 403.0 79 245.5 80 88.0 81 54.0 82 20.0 83 23.0 84 26.0 85 15.0 86 4.0 87 4.5 88 5.0 89 4.0 90 3.0 91 2.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1297665.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.25228722487933 #Duplication Level Percentage of deduplicated Percentage of total 1 82.86097404275547 21.752900903036874 2 8.518841221091588 4.472781331184763 3 2.7410302883072895 2.1587494326221024 4 1.2217331380056495 1.2829315700430979 5 0.7026659586815998 0.9223294285227274 6 0.47631081493222044 0.7502548993150195 7 0.31973139364324377 0.5875576266513374 8 0.22755119873071591 0.4778991541955481 9 0.17590289776928622 0.4156068056335099 >10 1.4204224169653434 8.328206963670889 >50 0.5269724059727567 10.160438788133602 >100 0.797360787851403 34.92276361500193 >500 0.0054017667223653365 0.8823654405522743 >1k 0.0027008833611826683 1.561944395034767 >5k 0.0015004907562125934 3.0308465056684413 >10k+ 9.00294453727556E-4 8.292423140733101 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGC 39647 3.05525694227709 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCG 35031 2.699541098819803 No Hit GAATCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTC 30579 2.3564633399220907 TruSeq Adapter, Index 27 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTGC 9243 0.7122793633179596 TruSeq Adapter, Index 27 (96% over 25bp) GAACTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCT 8747 0.674056863674369 TruSeq Adapter, Index 27 (100% over 22bp) GAATGATCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTC 7402 0.5704091579876163 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6800 0.5240181402750325 No Hit GAATGACTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCT 6279 0.48386910335101896 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCACCTTTCT 4672 0.36003128696543407 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCACCTTTCTCGTA 4557 0.3511692154754887 No Hit CTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTGCT 2058 0.15859254892441424 TruSeq Adapter, Index 27 (100% over 25bp) GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCACCTTTCTCGT 1888 0.14549209541753844 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTAT 1569 0.12090947971934204 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1515 0.11674815919362855 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 7.706149121691653E-5 0.0 0.0 0.20814308777689158 0.0 2 7.706149121691653E-5 0.0 0.0 1.3773970940111662 0.0 3 7.706149121691653E-5 0.0 0.0 1.560572258633777 0.0 4 7.706149121691653E-5 0.0 0.0 2.5619863369976072 0.0 5 7.706149121691653E-5 0.0 0.0 5.902370796777288 0.0 6 7.706149121691653E-5 0.0 0.0 6.374911860919421 0.0 7 7.706149121691653E-5 0.0 0.0 7.228676122111639 0.0 8 1.5412298243383307E-4 0.0 0.0 8.537026119992447 0.0 9 1.5412298243383307E-4 0.0 0.0 8.849741651350696 0.0 10 1.5412298243383307E-4 0.0 0.0 12.432484501007579 0.0 11 1.5412298243383307E-4 0.0 0.0 13.017997711273711 0.0 12 1.5412298243383307E-4 0.0 0.0 17.096091826472936 0.0 13 1.5412298243383307E-4 0.0 0.0 17.763598463393866 0.0 14 1.5412298243383307E-4 0.0 0.0 18.02691757888207 0.0 15 1.5412298243383307E-4 0.0 0.0 18.60888596055222 0.0 16 1.5412298243383307E-4 0.0 0.0 19.078883995484198 0.0 17 1.5412298243383307E-4 0.0 0.0 19.40192576666551 0.0 18 3.0824596486766614E-4 0.0 0.0 19.931107026852075 0.0 19 3.0824596486766614E-4 0.0 0.0 20.55106672369217 0.0 20 3.0824596486766614E-4 0.0 0.0 20.82101312742503 0.0 21 3.0824596486766614E-4 0.0 0.0 21.01543926976531 0.0 22 3.0824596486766614E-4 0.0 0.0 21.27683184797309 0.0 23 3.0824596486766614E-4 0.0 0.0 21.47803940154046 0.0 24 3.0824596486766614E-4 0.0 0.0 21.638558487745296 0.0 25 3.0824596486766614E-4 0.0 0.0 21.770487760708658 0.0 26 3.0824596486766614E-4 0.0 0.0 21.91320564244239 0.0 27 3.0824596486766614E-4 0.0 0.0 22.08351153803177 0.0 28 3.0824596486766614E-4 0.0 0.0 22.212666597311326 0.0 29 3.0824596486766614E-4 0.0 0.0 22.356617462904524 0.0 30 3.0824596486766614E-4 0.0 0.0 22.527308665949995 0.0 31 3.853074560845827E-4 0.0 0.0 22.688598367067 0.0 32 3.853074560845827E-4 0.0 0.0 22.83740410660687 0.0 33 3.853074560845827E-4 0.0 0.0 22.988213444918372 0.0 34 3.853074560845827E-4 0.0 0.0 23.14827016217591 0.0 35 3.853074560845827E-4 0.0 0.0 23.30239314460974 0.0 36 4.6236894730149924E-4 0.0 0.0 23.459675648183467 0.0 37 4.6236894730149924E-4 0.0 0.0 23.611409724389578 0.0 38 4.6236894730149924E-4 0.0 0.0 23.75659357384225 0.0 39 4.6236894730149924E-4 0.0 0.0 23.904320452505075 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAACTA 70 0.0 45.000004 26 CGACAGT 35 1.2120836E-7 45.000004 37 GCCGATC 35 1.2120836E-7 45.000004 24 TTGACGT 35 1.2120836E-7 45.000004 29 GAACGTA 70 0.0 45.000004 9 ACTCGAA 35 1.2120836E-7 45.000004 7 TACCGAA 35 1.2120836E-7 45.000004 12 CGGACTA 35 1.2120836E-7 45.000004 15 CTTAACG 75 0.0 45.0 1 AACGTAC 25 3.8910854E-5 45.0 37 ATCTCGC 25 3.8910854E-5 45.0 12 CGAACGA 25 3.8910854E-5 45.0 14 GCGACTT 20 7.033623E-4 45.0 43 GTCGAGT 25 3.8910854E-5 45.0 13 GTCGACA 40 6.8157533E-9 45.0 41 CGACGTG 25 3.8910854E-5 45.0 20 GGTCGAC 20 7.033623E-4 45.0 36 CGACGAT 25 3.8910854E-5 45.0 32 CTATCGG 25 3.8910854E-5 45.0 2 CGTGCGG 40 6.8157533E-9 45.0 2 >>END_MODULE