SRR3548206_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548206_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	582328
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGC	10409	1.7874805951285186	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCG	7960	1.3669272300146995	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTC	7960	1.3669272300146995	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3700	0.635380747619898	No Hit
GAACTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCT	3109	0.5338915525270982	No Hit
GCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC	2634	0.4523224024948139	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTC	2041	0.35048975834924645	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCT	1568	0.26926405736972975	No Hit
CTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGCT	1492	0.25621299336456427	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTTCCGAATCGTA	1352	0.23217155967083844	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTTCCGAAT	1149	0.19731148081493594	No Hit
CCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC	899	0.15438034921899685	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	740	0.1270761495239796	No Hit
TGTTAGGGGAAACTATCAATCATCAAAAGCTTACTATTCACCTACAGCATT	589	0.10114574604003243	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTGACG	40	6.8048394E-9	45.000004	1
CTGCTAT	20	7.0304144E-4	45.000004	36
CGGAACG	20	7.0304144E-4	45.000004	33
ATCTCGA	20	7.0304144E-4	45.000004	22
AGTCCGA	20	7.0304144E-4	45.000004	10
AGTCCAT	20	7.0304144E-4	45.000004	28
ATTAGTA	20	7.0304144E-4	45.000004	12
GTATTAC	20	7.0304144E-4	45.000004	20
AGTCAGG	65	0.0	45.000004	2
CAAGTGC	30	2.1636497E-6	45.000004	35
ATCTACG	20	7.0304144E-4	45.000004	13
GTACACT	30	2.1636497E-6	45.000004	18
TACCACG	20	7.0304144E-4	45.000004	29
ACGTTAG	30	2.1636497E-6	45.000004	1
GCGGTAT	30	2.1636497E-6	45.000004	22
TTAGCCA	20	7.0304144E-4	45.000004	30
CCTAGAT	20	7.0304144E-4	45.000004	35
GCTGGAA	30	2.1636497E-6	45.000004	25
TAGACGA	30	2.1636497E-6	45.000004	34
GAGTCCG	20	7.0304144E-4	45.000004	9