##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548206_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 582328 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.639165556181396 28.0 25.0 31.0 16.0 33.0 2 27.416574507837506 30.0 25.0 31.0 16.0 33.0 3 27.36489057713179 30.0 25.0 31.0 16.0 33.0 4 30.39156626506024 33.0 28.0 35.0 19.0 37.0 5 31.797663859543075 33.0 32.0 35.0 26.0 37.0 6 31.015408841752414 33.0 30.0 35.0 17.0 37.0 7 31.85228084515943 33.0 30.0 35.0 26.0 35.0 8 33.17921343297935 35.0 33.0 35.0 28.0 37.0 9 34.32840598425629 37.0 33.0 38.0 28.0 39.0 10 33.77445700704757 35.0 32.0 38.0 27.0 39.0 11 33.83674836174802 37.0 32.0 39.0 26.0 39.0 12 33.137369317635425 35.0 31.0 37.0 23.0 39.0 13 33.31845969968815 35.0 32.0 38.0 23.0 39.0 14 33.9207869104697 36.0 32.0 39.0 22.0 40.0 15 35.139500419007845 37.0 33.0 39.0 27.0 41.0 16 35.157042079377945 36.0 33.0 39.0 27.0 41.0 17 34.877915882458 36.0 33.0 39.0 27.0 40.0 18 34.5785244741795 36.0 33.0 39.0 27.0 40.0 19 33.90601688395543 36.0 32.0 38.0 25.0 40.0 20 34.07018037944251 35.0 32.0 38.0 27.0 40.0 21 34.29514466074102 35.0 33.0 39.0 27.0 40.0 22 34.654795922572845 35.0 33.0 39.0 27.0 40.0 23 35.07517069417923 35.0 33.0 39.0 29.0 40.0 24 34.746984517316704 35.0 33.0 39.0 27.0 40.0 25 33.920233957494744 35.0 33.0 39.0 24.0 40.0 26 33.89291430259235 35.0 32.0 39.0 24.0 40.0 27 34.39481701034469 35.0 33.0 39.0 26.0 40.0 28 34.294505845502876 35.0 33.0 39.0 25.0 40.0 29 34.45991949554203 36.0 33.0 39.0 25.0 40.0 30 33.911086191974285 35.0 33.0 39.0 23.0 40.0 31 33.79606338695718 35.0 33.0 39.0 23.0 40.0 32 33.23888083691665 35.0 32.0 39.0 21.0 40.0 33 33.17153734665 35.0 32.0 39.0 19.0 40.0 34 32.880855806349686 35.0 32.0 39.0 16.0 40.0 35 32.803296424008465 35.0 32.0 39.0 15.0 40.0 36 32.53099627701227 35.0 32.0 39.0 14.0 40.0 37 32.52926529378632 35.0 32.0 39.0 12.0 40.0 38 32.442777953318405 35.0 31.0 39.0 12.0 40.0 39 32.27148445549587 35.0 31.0 39.0 11.0 40.0 40 32.10596605349563 35.0 31.0 39.0 10.0 40.0 41 31.899099820032696 35.0 31.0 39.0 10.0 40.0 42 31.94580545671855 35.0 31.0 39.0 10.0 40.0 43 31.942619966754133 35.0 31.0 39.0 10.0 40.0 44 31.912259070489483 35.0 31.0 39.0 10.0 40.0 45 31.94359536206399 35.0 31.0 39.0 10.0 40.0 46 31.675043961478753 35.0 31.0 39.0 10.0 40.0 47 31.77783826297207 35.0 31.0 39.0 10.0 40.0 48 31.5994851698699 35.0 31.0 38.0 10.0 40.0 49 31.698778008270253 35.0 31.0 38.0 10.0 40.0 50 31.560201467214352 35.0 31.0 39.0 10.0 40.0 51 29.547287782830296 34.0 26.0 37.0 8.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 18.0 9 29.0 10 28.0 11 38.0 12 26.0 13 36.0 14 65.0 15 156.0 16 477.0 17 988.0 18 1926.0 19 3094.0 20 4695.0 21 6385.0 22 8425.0 23 10804.0 24 13288.0 25 15796.0 26 17272.0 27 17480.0 28 18062.0 29 20962.0 30 26093.0 31 33221.0 32 43282.0 33 54237.0 34 60989.0 35 56563.0 36 63743.0 37 63501.0 38 36874.0 39 3773.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.36744927257491 20.943179788710143 24.147044277451883 21.54232666126307 2 33.56579110054814 27.783482848154307 26.65319201549642 11.997534035801129 3 25.233201906829137 26.817017213666528 35.99449107719361 11.955289802310725 4 22.343765025896058 24.624953634377878 39.6122116745202 13.419069665205862 5 23.66741767526205 28.437581569150034 33.194179225453695 14.70082153013422 6 19.303382286271653 37.70761495239796 32.19251006305724 10.796492698273138 7 70.24683683422401 5.461011663529832 21.75406300229424 2.5380884999519173 8 68.36988776084955 9.593390666428542 17.15510846121086 4.881613111511038 9 64.43602231045047 6.2847742165927105 18.955124946765398 10.324078526191425 10 41.9940308554629 21.938323419104012 23.94475278537182 12.122892940061272 11 36.3983871632482 21.062700059073237 29.173249440178044 13.365663337500516 12 31.347281944196396 18.928507645175916 33.35611545383358 16.36809495679411 13 19.398517673888254 31.85730378755615 34.899403772444394 13.844774766111195 14 13.97082056847687 37.28190985149263 32.75250374359467 15.994765836435823 15 11.230612300971273 21.8528046049649 52.946449423692485 13.970133670371338 16 12.244473904740971 19.933954747152807 46.731567089337965 21.090004258768253 17 13.347975711282988 19.268178758362982 36.61561868912366 30.768226841230373 18 16.965352859556813 22.11983624349164 39.66166833811872 21.25314255883282 19 20.80133532991716 24.904177714277864 33.719999725240754 20.574487230564216 20 25.099256776249813 21.194756219862345 36.14990177357091 17.556085230316935 21 17.55814592463354 28.39001387534173 35.60605019851355 18.445790001511174 22 17.143087744364003 23.22797461224602 33.62555123572969 26.00338640766029 23 16.179541426824745 30.47354755395585 32.59571925100631 20.751191768213104 24 17.00450605157231 22.46551771510214 39.811068676072594 20.718907557252958 25 14.603453723674631 27.35039359261447 37.049394842769026 20.996757840941875 26 13.481405668283166 29.362833317305707 35.945549587174234 21.21021142723688 27 16.86128779656826 30.65437348023794 33.67122995974777 18.813108763446028 28 12.15981371323378 27.0625832863953 43.47069005783682 17.306912942534105 29 14.855201879353217 21.64398758088225 41.43729994092676 22.06351059883777 30 16.59666030141089 24.995535162314024 38.89835281834293 19.509451717932162 31 23.450529598439367 24.679046860188762 31.677679932958746 20.192743608413128 32 22.75624733826984 26.218213790166367 31.830514761440288 19.195024110123505 33 20.818507782555535 24.722664889890233 30.044751411575604 24.41407591597862 34 19.531432457309283 24.032332293827533 34.57776373452762 21.858471514335566 35 16.67496668544188 25.464343119341677 33.2809001112775 24.57979008393895 36 23.3634652635628 23.197235922023328 34.085601241911775 19.353697572502096 37 19.75810883213584 25.337438694344083 35.86947562198623 19.034976851533845 38 18.732913409624814 28.13070984050226 29.18784602492066 23.94853072495226 39 22.003922188182607 25.217059801349066 29.261172397686526 23.517845612781798 40 21.9881235317553 24.413045568820323 30.06312593589867 23.53570496352571 41 17.87446250223242 25.216372903243535 29.66730090258411 27.241863691939937 42 21.218969378082456 26.13406877223833 30.577097443365254 22.069864406313968 43 21.70838427827616 25.413340935005703 30.093864626121363 22.784410160596778 44 19.105383907351182 26.817017213666528 31.37407097031226 22.70352790867003 45 17.48361748018299 27.548048522482176 28.639014438598174 26.329319558736657 46 23.66638732810375 27.390061958209117 28.445824346416455 20.49772636727068 47 19.669155527469055 24.02975642593178 34.132482037614544 22.168606008984625 48 20.862297536783394 24.17812641672734 31.273612122377763 23.685963924111498 49 19.692510063057245 21.439807119011967 35.70015523897185 23.16752757895894 50 18.80125977112555 26.013002981137777 31.368575785467982 23.817161462268686 51 17.20250443049278 25.42896786690662 27.904548639254852 29.46397906334574 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 66.0 1 180.0 2 294.0 3 4414.5 4 8535.0 5 7445.0 6 6355.0 7 6831.0 8 7307.0 9 7693.0 10 8079.0 11 8151.0 12 8223.0 13 7922.0 14 7621.0 15 7520.0 16 7419.0 17 6982.5 18 6546.0 19 6124.0 20 5702.0 21 5437.0 22 5172.0 23 4913.5 24 4655.0 25 4514.0 26 4360.5 27 4348.0 28 4885.5 29 5423.0 30 6269.5 31 7116.0 32 8354.0 33 9592.0 34 10141.5 35 10691.0 36 11742.0 37 12793.0 38 14638.5 39 16484.0 40 23345.5 41 30207.0 42 39472.5 43 48738.0 44 70527.5 45 92317.0 46 77594.0 47 62871.0 48 56554.0 49 50237.0 50 43129.0 51 36021.0 52 31659.5 53 27298.0 54 24279.0 55 21260.0 56 19410.0 57 17560.0 58 16762.0 59 15964.0 60 14248.5 61 12533.0 62 10504.5 63 8476.0 64 6718.0 65 4960.0 66 4154.0 67 3348.0 68 2390.5 69 1433.0 70 1192.0 71 951.0 72 776.5 73 602.0 74 475.0 75 278.5 76 209.0 77 156.5 78 104.0 79 80.0 80 56.0 81 38.0 82 20.0 83 16.0 84 12.0 85 9.5 86 7.0 87 4.5 88 2.0 89 1.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 582328.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.51252476884152 #Duplication Level Percentage of deduplicated Percentage of total 1 82.74290315335277 26.901806882192368 2 8.126627648637614 5.284343654269655 3 2.8741643346922374 2.8033901736420686 4 1.4246865250433827 1.8528062373323095 5 0.7859178926423661 1.2776087475405329 6 0.5350872196298406 1.043822188902344 7 0.3692888452178196 0.8404558908900871 8 0.25320252899925494 0.6585802796497273 9 0.2120443140646305 0.6204686411806479 >10 1.4899377695653466 10.99427969507467 >50 0.655738946657912 15.678657941624923 >100 0.5223318434822251 23.97638731474199 >500 0.002151727470575593 0.4814865728899606 >1k 0.004303454941151186 2.9810892244494656 >5k 0.0010758637352877964 2.7843320887788496 >10k+ 5.379318676438982E-4 1.8204844668403923 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGC 10409 1.7874805951285186 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCG 7960 1.3669272300146995 No Hit GAATCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTC 7960 1.3669272300146995 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3700 0.635380747619898 No Hit GAACTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCT 3109 0.5338915525270982 No Hit GCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC 2634 0.4523224024948139 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTC 2041 0.35048975834924645 No Hit GAATGACTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCT 1568 0.26926405736972975 No Hit CTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGCT 1492 0.25621299336456427 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTTCCGAATCGTA 1352 0.23217155967083844 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTTCCGAAT 1149 0.19731148081493594 No Hit CCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC 899 0.15438034921899685 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 740 0.1270761495239796 No Hit TGTTAGGGGAAACTATCAATCATCAAAAGCTTACTATTCACCTACAGCATT 589 0.10114574604003243 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.29811377780220083 0.0 2 0.0 0.0 0.0 1.17631300572873 0.0 3 0.0 0.0 0.0 1.414494923823 0.0 4 0.0 0.0 0.0 2.405001992004506 0.0 5 0.0 0.0 0.0 4.819448832960119 0.0 6 0.0 0.0 0.0 5.547560824827245 0.0 7 0.0 0.0 0.0 6.354150925251748 0.0 8 0.0 0.0 0.0 8.222513772307016 0.0 9 0.0 0.0 0.0 8.777870890632084 0.0 10 0.0 0.0 0.0 11.314413869846547 0.0 11 0.0 0.0 0.0 12.591357448036158 0.0 12 0.0 0.0 0.0 15.712278990534545 0.0 13 0.0 0.0 0.0 16.564032641397976 0.0 14 0.0 0.0 0.0 16.80152766138671 0.0 15 0.0 0.0 0.0 17.295063950213624 0.0 16 0.0 0.0 0.0 17.944354384470607 0.0 17 0.0 0.0 0.0 18.51190394416892 0.0 18 0.0010303471583025373 0.0 0.0 19.74660328886813 0.0 19 0.0010303471583025373 0.0 0.0 20.30985973540685 0.0 20 0.0010303471583025373 0.0 0.0 20.87723757057878 0.0 21 0.0010303471583025373 0.0 0.0 21.30156887527304 0.0 22 0.0010303471583025373 0.0 0.0 21.645533101619705 0.0 23 0.0010303471583025373 0.0 0.0 21.975415916802902 0.0 24 0.0010303471583025373 0.0 0.0 22.23008338943001 0.0 25 0.0010303471583025373 0.0 0.0 22.450405956780372 0.0 26 0.0010303471583025373 0.0 0.0 22.654929867703427 0.0 27 0.0010303471583025373 0.0 0.0 22.874222087895483 0.0 28 0.0010303471583025373 0.0 0.0 23.043542470909866 0.0 29 0.0010303471583025373 0.0 0.0 23.230722204668158 0.0 30 0.0010303471583025373 0.0 0.0 23.49397590361446 0.0 31 0.0010303471583025373 0.0 0.0 23.71773296149249 0.0 32 0.0010303471583025373 0.0 0.0 23.939601049580304 0.0 33 0.0010303471583025373 0.0 0.0 24.14275116429229 0.0 34 0.0010303471583025373 0.0 0.0 24.354315780797076 0.0 35 0.0010303471583025373 0.0 0.0 24.58356802351939 0.0 36 0.0010303471583025373 0.0 0.0 24.774010523278978 0.0 37 0.00137379621107005 0.0 0.0 24.9598164608262 0.0 38 0.00137379621107005 0.0 0.0 25.13583410036955 0.0 39 0.00137379621107005 0.0 0.0 25.341388358450907 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTTGACG 40 6.8048394E-9 45.000004 1 CTGCTAT 20 7.0304144E-4 45.000004 36 CGGAACG 20 7.0304144E-4 45.000004 33 ATCTCGA 20 7.0304144E-4 45.000004 22 AGTCCGA 20 7.0304144E-4 45.000004 10 AGTCCAT 20 7.0304144E-4 45.000004 28 ATTAGTA 20 7.0304144E-4 45.000004 12 GTATTAC 20 7.0304144E-4 45.000004 20 AGTCAGG 65 0.0 45.000004 2 CAAGTGC 30 2.1636497E-6 45.000004 35 ATCTACG 20 7.0304144E-4 45.000004 13 GTACACT 30 2.1636497E-6 45.000004 18 TACCACG 20 7.0304144E-4 45.000004 29 ACGTTAG 30 2.1636497E-6 45.000004 1 GCGGTAT 30 2.1636497E-6 45.000004 22 TTAGCCA 20 7.0304144E-4 45.000004 30 CCTAGAT 20 7.0304144E-4 45.000004 35 GCTGGAA 30 2.1636497E-6 45.000004 25 TAGACGA 30 2.1636497E-6 45.000004 34 GAGTCCG 20 7.0304144E-4 45.000004 9 >>END_MODULE