SRR3548204_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548204_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	436290
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3779	0.866166999014417	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGC	2130	0.48820738499621813	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCG	1892	0.4336565128698801	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTC	1876	0.4299892273487818	No Hit
CAGAGCGTCTTTTAAAAAGTTGCAATGGTTTGCTTTATAGAAACAATCTTT	1155	0.2647321735542873	No Hit
CTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGCT	1046	0.23974879094180476	No Hit
GCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC	975	0.22347521144193083	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	751	0.17213321414655391	No Hit
CCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC	685	0.1570056613720232	No Hit
GAACTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCT	627	0.14371175135804165	No Hit
TCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC	501	0.11483187787939214	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCAAGCG	45	3.8380676E-10	45.000004	1
ATAGCGG	45	3.8380676E-10	45.000004	2
CGTCTGG	45	3.8380676E-10	45.000004	2
CGTTAGG	45	3.8380676E-10	45.000004	2
TTACGGG	90	0.0	45.000004	3
TCACGAC	35	1.2096098E-7	45.0	25
CTTAACG	20	7.02847E-4	45.0	1
ATCCTCC	25	3.8868126E-5	45.0	29
TGTCACA	20	7.02847E-4	45.0	42
CGGGTAC	35	1.2096098E-7	45.0	6
CTATGCG	20	7.02847E-4	45.0	1
AACCGCT	25	3.8868126E-5	45.0	15
AGCCGGA	20	7.02847E-4	45.0	21
TTGGCCG	20	7.02847E-4	45.0	36
ACGCCTT	20	7.02847E-4	45.0	17
TCACCTA	20	7.02847E-4	45.0	36
GCGACGA	25	3.8868126E-5	45.0	15
ACGCCAG	20	7.02847E-4	45.0	38
GTCGATA	25	3.8868126E-5	45.0	35
ATGATCG	25	3.8868126E-5	45.0	27