SRR3548203_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548203_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	422730
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4022	0.9514347219265253	No Hit
CTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGCT	2402	0.568211387883519	No Hit
GCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC	1870	0.44236273744470467	No Hit
CCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC	1516	0.3586213422278996	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTC	1225	0.2897830766683226	No Hit
TCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC	1211	0.28647127007782747	No Hit
ACTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC	1158	0.2739337165566674	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCG	1148	0.27156814042059946	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGC	1104	0.26115960542190053	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	938	0.22189104156317271	No Hit
AGCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTG	667	0.15778392827573157	No Hit
AAAACTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTC	563	0.13318193646062498	No Hit
CAGAGCGTCTTTTAAAAAGTTGCAATGGTTTGCTTTATAGAAACAATCTTT	539	0.12750455373406194	No Hit
ACCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTG	525	0.12419274714356682	No Hit
GAACTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCT	516	0.12206372862110568	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	453	0.10716059896387765	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGGGCG	125	0.0	45.000004	5
GCGACGG	35	1.2094824E-7	45.000004	2
TACATCA	45	3.8380676E-10	45.000004	24
GTGCTAG	45	3.8380676E-10	45.000004	1
AGTTGCA	70	0.0	45.000004	18
GCGTCTT	70	0.0	45.000004	5
TCACGAC	20	7.028221E-4	45.0	25
GTCATCC	20	7.028221E-4	45.0	10
CTATGCG	20	7.028221E-4	45.0	1
ACCGGGA	40	6.7975634E-9	45.0	4
CTCGTAG	20	7.028221E-4	45.0	1
GTCTGGC	25	3.886607E-5	45.0	14
CGACGGT	20	7.028221E-4	45.0	28
CGTGCAA	20	7.028221E-4	45.0	34
CAGCCCG	20	7.028221E-4	45.0	14
AGCCCAT	20	7.028221E-4	45.0	27
GAACTTC	20	7.028221E-4	45.0	8
TTAGAGC	20	7.028221E-4	45.0	2
GGCAACT	25	3.886607E-5	45.0	8
GGCAACG	40	6.7975634E-9	45.0	8