##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548203_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 422730 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.160483050646985 28.0 25.0 31.0 16.0 33.0 2 27.38458827147352 30.0 25.0 33.0 16.0 33.0 3 27.294632507747263 30.0 25.0 33.0 16.0 34.0 4 31.616088283301398 33.0 28.0 35.0 19.0 37.0 5 32.95437749863979 35.0 32.0 35.0 28.0 37.0 6 31.59941097154212 35.0 31.0 35.0 19.0 37.0 7 33.629210134128165 35.0 33.0 35.0 30.0 37.0 8 33.49492110803586 35.0 35.0 37.0 28.0 37.0 9 35.966479786151915 38.0 35.0 39.0 31.0 39.0 10 35.296349916022045 37.0 34.0 39.0 30.0 39.0 11 35.73254796205616 37.0 35.0 39.0 31.0 39.0 12 35.720353417074726 37.0 35.0 39.0 31.0 39.0 13 35.77553521160078 37.0 35.0 39.0 31.0 39.0 14 36.326979395831856 38.0 35.0 40.0 31.0 41.0 15 36.86495162396802 38.0 35.0 40.0 32.0 41.0 16 36.36949589572541 38.0 34.0 40.0 31.0 41.0 17 36.18339602110094 38.0 34.0 40.0 31.0 41.0 18 36.10111182078395 38.0 34.0 39.0 31.0 40.0 19 35.69480756038133 37.0 34.0 39.0 30.0 40.0 20 36.03409031769687 37.0 34.0 39.0 31.0 40.0 21 35.91436614387434 37.0 34.0 39.0 30.0 40.0 22 36.44397842594564 38.0 35.0 40.0 31.0 41.0 23 36.58443924017695 38.0 35.0 40.0 32.0 41.0 24 36.60241525323492 38.0 35.0 40.0 32.0 41.0 25 35.75606652000095 38.0 34.0 40.0 29.0 41.0 26 36.06376410474771 38.0 34.0 40.0 30.0 41.0 27 36.32417855368675 38.0 35.0 40.0 31.0 41.0 28 36.24884678163367 38.0 35.0 40.0 31.0 41.0 29 36.29999053769546 38.0 35.0 40.0 31.0 41.0 30 35.61459323918341 38.0 34.0 40.0 29.0 41.0 31 35.505225557684575 38.0 34.0 40.0 29.0 41.0 32 35.212875830908615 38.0 34.0 40.0 27.0 41.0 33 35.01322593617675 38.0 34.0 40.0 25.0 41.0 34 34.81426678967662 38.0 34.0 40.0 24.0 41.0 35 34.68913017765477 38.0 34.0 40.0 23.0 41.0 36 34.302081706999736 38.0 34.0 40.0 21.0 41.0 37 34.39362950346557 38.0 34.0 40.0 21.0 41.0 38 34.23888534052468 38.0 33.0 40.0 21.0 41.0 39 34.00928252075793 38.0 33.0 40.0 19.0 41.0 40 33.91527215953445 37.0 33.0 40.0 19.0 41.0 41 33.67017718165259 37.0 33.0 40.0 18.0 41.0 42 33.905424266080004 37.0 33.0 40.0 18.0 41.0 43 33.942043384666334 37.0 33.0 40.0 18.0 41.0 44 33.9623991673172 37.0 33.0 40.0 18.0 41.0 45 33.94719087833842 37.0 33.0 40.0 20.0 41.0 46 33.54529605185343 37.0 33.0 40.0 18.0 41.0 47 33.55584652142029 37.0 33.0 40.0 18.0 41.0 48 33.59881248077969 37.0 33.0 40.0 18.0 41.0 49 33.73845480566792 37.0 33.0 40.0 18.0 41.0 50 33.634222789960496 37.0 33.0 40.0 18.0 41.0 51 31.70171267712251 35.0 30.0 38.0 14.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 6.0 10 1.0 11 12.0 12 17.0 13 16.0 14 30.0 15 47.0 16 124.0 17 289.0 18 582.0 19 1238.0 20 2084.0 21 3203.0 22 3959.0 23 4652.0 24 5260.0 25 6556.0 26 7716.0 27 8079.0 28 7543.0 29 8231.0 30 10040.0 31 13825.0 32 20291.0 33 30101.0 34 41126.0 35 49873.0 36 68310.0 37 74857.0 38 47132.0 39 7527.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.0690038558891 26.776665956993828 26.22761573581246 15.926714451304615 2 33.82868497622596 26.23707804035673 25.206396517871926 14.727840465545384 3 26.91457904572659 25.205686845031106 33.075958649729145 14.803775459513163 4 23.50247202706219 28.545170676318214 32.35422137061481 15.598135926004778 5 20.866510538641688 31.03943415418825 31.932912260781116 16.161143046388947 6 19.010952617509993 36.394861968632455 30.737113523998772 13.857071889858775 7 71.68996759160694 7.582381188938565 16.04735883424408 4.680292385210418 8 66.9602346651527 7.071889858775105 15.995316159250587 9.972559316821613 9 60.361933148818395 8.966479786151918 21.00063870555674 9.67094835947295 10 32.899723227592084 26.931611193906274 24.23887587822014 15.929789700281505 11 24.808979727012513 25.504222553402883 31.46050670640835 18.22629101317626 12 23.35580630662598 19.256026305206632 37.16059896387765 20.227568424289736 13 21.622548671729 25.549878172828993 38.38715019042888 14.440422965013127 14 14.236510302084074 33.2798713126582 32.68161710784662 19.80200127741111 15 9.991247368296548 25.054763087549976 47.591133820642014 17.362855723511462 16 9.792775530480448 28.03799115274525 40.18285903531805 21.986374281456246 17 11.460506706408346 26.27232512478414 33.160882833013986 29.10628533579353 18 14.491282851938589 25.074633927092943 37.289286305679745 23.14479691528872 19 17.48468289451896 29.840560168429022 33.56350389137274 19.111253045679273 20 20.28103044496487 27.353393418967187 32.157168878480356 20.208407257587584 21 14.97598940221891 33.25432309038867 34.38530504104275 17.384382466349678 22 14.662787121803516 26.90629952925035 30.318406547914744 28.11250680103139 23 13.606320819435574 32.142738864050344 31.26984126984127 22.981099046672817 24 16.180540770704706 25.536394388853406 33.43079507013933 24.852269770302556 25 13.655997918293 29.64421734913538 31.016724623282 25.683060109289617 26 13.617439027275093 29.225510373051357 33.37709649185059 23.77995410782296 27 19.282047642703382 29.967828164549477 29.12402715681404 21.6260970359331 28 13.791545430889693 26.34187306318454 35.81718827620467 24.0493932297211 29 15.646393679180564 25.86047831949471 31.04936957395974 27.443758427364983 30 20.89868237409221 27.18212570671587 28.135926004778465 23.783265914413455 31 19.80673242968325 30.75698436354174 23.537245996262392 25.89903721051262 32 19.580583351075155 28.794975516286993 24.869538476095855 26.754902656542 33 20.798145388309322 29.386842665531187 25.02850519243962 24.78650675371987 34 15.711920138149646 27.70018688051475 28.354268682137533 28.23362429919807 35 16.916944621862655 27.606036950299245 28.24379627658316 27.23322215125494 36 19.57206727698531 28.398504955882004 29.27471435668157 22.754713410451117 37 19.836775246611314 28.38029001963428 30.95829489272112 20.824639841033285 38 17.00872897594209 32.71307927045632 27.996830127977667 22.281361625623923 39 18.9485014075178 27.905282331511838 32.17254512336479 20.973671137605564 40 21.921084380100776 29.688926738107067 30.133655051687843 18.25633383010432 41 17.086556430818725 28.43635417405909 27.900314621626098 26.576774773496087 42 22.708111560570575 24.138812007664466 30.154472121685238 22.99860431007972 43 23.03195893359828 20.257138125990583 33.96281314314101 22.748089797270126 44 20.26920256428453 23.61696591204788 27.836444065952264 28.277387457715324 45 19.302391597473566 22.82307856078348 30.464126037896527 27.410403803846428 46 23.682965486244175 26.643957135760417 27.87027180469803 21.802805573297377 47 16.569678045087883 25.656802214179265 33.72388995339815 24.049629787334705 48 17.801670096752066 23.506730064107114 32.45073687696639 26.24086296217444 49 21.009864452487403 18.29844108532633 36.081659688217066 24.6100347739692 50 18.034206230927545 19.652260307998013 35.71168358053604 26.601849880538403 51 15.928370354599863 19.494949494949495 29.445508953705673 35.131171196744965 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1048.0 1 904.5 2 761.0 3 3557.0 4 6353.0 5 4436.0 6 2519.0 7 2641.5 8 2764.0 9 3032.0 10 3300.0 11 3530.5 12 3761.0 13 3629.5 14 3498.0 15 3547.0 16 3596.0 17 3530.5 18 3465.0 19 3519.5 20 3574.0 21 3336.0 22 3098.0 23 3306.5 24 3515.0 25 3551.5 26 3824.5 27 4061.0 28 4772.0 29 5483.0 30 5944.0 31 6405.0 32 6446.5 33 6488.0 34 6824.0 35 7160.0 36 7438.0 37 7716.0 38 8994.0 39 10272.0 40 14670.5 41 19069.0 42 26444.5 43 33820.0 44 45274.5 45 56729.0 46 60786.5 47 64844.0 48 58803.0 49 52762.0 50 43311.5 51 33861.0 52 27527.5 53 21194.0 54 17694.5 55 14195.0 56 12209.0 57 10223.0 58 9036.0 59 7849.0 60 6789.5 61 5730.0 62 5003.0 63 4276.0 64 3348.5 65 2421.0 66 1827.5 67 1234.0 68 1099.0 69 964.0 70 758.0 71 552.0 72 384.5 73 217.0 74 202.5 75 127.5 76 67.0 77 64.0 78 61.0 79 43.0 80 25.0 81 14.0 82 3.0 83 2.0 84 1.0 85 9.5 86 18.0 87 9.5 88 1.0 89 1.0 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 422730.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.84830267975022 #Duplication Level Percentage of deduplicated Percentage of total 1 75.77306658965718 27.92108892668556 2 9.847155436927164 7.257019281488803 3 4.083773319033443 4.514403460056974 4 2.187330873754197 3.223977203874287 5 1.3924244061255289 2.5654237987792463 6 0.9313020806778469 2.059014057305907 7 0.683126487713021 1.7620436111462845 8 0.5116457655150609 1.5082622426009178 9 0.44072901273189924 1.461610445480326 >10 3.709612420608125 29.97463834355414 >50 0.3544541423184772 8.387662257568582 >100 0.07567725301325151 4.7401064724518065 >500 0.003880884769910334 0.8932984241124986 >1k 0.005821327154865502 3.7314514748946843 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4022 0.9514347219265253 No Hit CTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGCT 2402 0.568211387883519 No Hit GCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC 1870 0.44236273744470467 No Hit CCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC 1516 0.3586213422278996 No Hit GAATCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTC 1225 0.2897830766683226 No Hit TCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC 1211 0.28647127007782747 No Hit ACTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC 1158 0.2739337165566674 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCG 1148 0.27156814042059946 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGC 1104 0.26115960542190053 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 938 0.22189104156317271 No Hit AGCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTG 667 0.15778392827573157 No Hit AAAACTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTC 563 0.13318193646062498 No Hit CAGAGCGTCTTTTAAAAAGTTGCAATGGTTTGCTTTATAGAAACAATCTTT 539 0.12750455373406194 No Hit ACCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTG 525 0.12419274714356682 No Hit GAACTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCT 516 0.12206372862110568 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 453 0.10716059896387765 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.3655761360679393E-4 0.0 0.0 0.6500603221914697 0.0 2 2.3655761360679393E-4 0.0 0.0 2.229318950630426 0.0 3 2.3655761360679393E-4 0.0 0.0 3.105055236202777 0.0 4 2.3655761360679393E-4 0.0 0.0 4.801409883377096 0.0 5 2.3655761360679393E-4 0.0 0.0 8.378397558725428 0.0 6 2.3655761360679393E-4 0.0 0.0 10.941735859768647 0.0 7 2.3655761360679393E-4 0.0 0.0 12.752347834315048 0.0 8 2.3655761360679393E-4 0.0 0.0 17.286684171930073 0.0 9 2.3655761360679393E-4 0.0 0.0 18.918222032976132 0.0 10 2.3655761360679393E-4 0.0 0.0 22.55742436070305 0.0 11 2.3655761360679393E-4 0.0 0.0 26.539398670546213 0.0 12 2.3655761360679393E-4 0.0 0.0 30.494878527665414 0.0 13 2.3655761360679393E-4 0.0 0.0 31.62183899888818 0.0 14 2.3655761360679393E-4 0.0 0.0 31.916589785442245 0.0 15 2.3655761360679393E-4 0.0 0.0 32.55198353559009 0.0 16 2.3655761360679393E-4 0.0 0.0 33.98268398268398 0.0 17 2.3655761360679393E-4 0.0 0.0 35.431599366025594 0.0 18 0.0023655761360679393 0.0 0.0 38.576159723700705 0.0 19 0.0023655761360679393 0.0 0.0 39.56733612471317 0.0 20 0.0023655761360679393 0.0 0.0 40.85042462091642 0.0 21 0.0023655761360679393 0.0 0.0 41.75691339625766 0.0 22 0.0023655761360679393 0.0 0.0 42.469898043668536 0.0 23 0.0023655761360679393 0.0 0.0 43.195893359827785 0.0 24 0.0023655761360679393 0.0 0.0 43.784685260095095 0.0 25 0.0023655761360679393 0.0 0.0 44.22042438435881 0.0 26 0.0023655761360679393 0.0 0.0 44.621389539422324 0.0 27 0.0023655761360679393 0.0 0.0 45.0001182788068 0.0 28 0.0023655761360679393 0.0 0.0 45.35235256546732 0.0 29 0.0023655761360679393 0.0 0.0 45.74196295507771 0.0 30 0.0023655761360679393 0.0 0.0 46.190003075248974 0.0 31 0.0023655761360679393 0.0 0.0 46.63094646701204 0.0 32 0.0023655761360679393 0.0 0.0 47.01511603150947 0.0 33 0.0026021337496747333 0.0 0.0 47.38225344782722 0.0 34 0.0026021337496747333 0.0 0.0 47.71272443403591 0.0 35 0.002838691363281527 0.0 0.0 48.122678778416486 0.0 36 0.002838691363281527 0.0 0.0 48.457644359283705 0.0 37 0.002838691363281527 0.0 0.0 48.78267452037944 0.0 38 0.002838691363281527 0.0 0.0 49.121898138291584 0.0 39 0.002838691363281527 0.0 0.0 49.455444373477164 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATGGGCG 125 0.0 45.000004 5 GCGACGG 35 1.2094824E-7 45.000004 2 TACATCA 45 3.8380676E-10 45.000004 24 GTGCTAG 45 3.8380676E-10 45.000004 1 AGTTGCA 70 0.0 45.000004 18 GCGTCTT 70 0.0 45.000004 5 TCACGAC 20 7.028221E-4 45.0 25 GTCATCC 20 7.028221E-4 45.0 10 CTATGCG 20 7.028221E-4 45.0 1 ACCGGGA 40 6.7975634E-9 45.0 4 CTCGTAG 20 7.028221E-4 45.0 1 GTCTGGC 25 3.886607E-5 45.0 14 CGACGGT 20 7.028221E-4 45.0 28 CGTGCAA 20 7.028221E-4 45.0 34 CAGCCCG 20 7.028221E-4 45.0 14 AGCCCAT 20 7.028221E-4 45.0 27 GAACTTC 20 7.028221E-4 45.0 8 TTAGAGC 20 7.028221E-4 45.0 2 GGCAACT 25 3.886607E-5 45.0 8 GGCAACG 40 6.7975634E-9 45.0 8 >>END_MODULE