##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548202_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 421242 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.435319839902004 28.0 25.0 31.0 16.0 33.0 2 27.311858741530997 30.0 25.0 31.0 16.0 33.0 3 27.201774751805374 30.0 25.0 31.0 16.0 33.0 4 30.282367380270724 33.0 28.0 35.0 19.0 37.0 5 31.69015910094435 33.0 30.0 35.0 25.0 37.0 6 30.803604578840666 33.0 29.0 35.0 17.0 37.0 7 31.80132085594504 33.0 30.0 35.0 25.0 35.0 8 33.10114850845832 35.0 33.0 35.0 28.0 37.0 9 34.16204936829661 37.0 32.0 38.0 27.0 39.0 10 33.811431433712684 35.0 32.0 38.0 27.0 39.0 11 34.03989868056841 37.0 32.0 39.0 27.0 39.0 12 33.49444025049734 35.0 31.0 38.0 25.0 39.0 13 33.674151675284044 35.0 32.0 39.0 25.0 39.0 14 34.30658148997488 37.0 32.0 39.0 25.0 40.0 15 35.39165847660015 37.0 33.0 40.0 27.0 41.0 16 35.35215624272983 37.0 33.0 40.0 27.0 41.0 17 34.954031174479276 36.0 33.0 39.0 27.0 40.0 18 34.735892907165 36.0 33.0 39.0 27.0 40.0 19 34.16881507541983 36.0 32.0 39.0 26.0 40.0 20 34.23624899701359 35.0 32.0 38.0 27.0 40.0 21 34.3464113265059 35.0 33.0 39.0 27.0 40.0 22 34.68472516985486 36.0 33.0 39.0 27.0 40.0 23 35.0919827557556 36.0 33.0 39.0 29.0 40.0 24 34.73077233514227 36.0 33.0 39.0 27.0 40.0 25 33.81285816703937 35.0 32.0 39.0 24.0 40.0 26 33.83610608628769 35.0 32.0 39.0 24.0 40.0 27 34.332490587358336 35.0 33.0 39.0 25.0 40.0 28 34.15798044829338 36.0 33.0 39.0 24.0 40.0 29 34.20847398882353 36.0 33.0 39.0 24.0 40.0 30 33.58431970221393 35.0 32.0 39.0 22.0 40.0 31 33.459766594973914 35.0 32.0 39.0 22.0 40.0 32 33.081724994183865 35.0 32.0 39.0 19.0 40.0 33 32.942389410362686 36.0 32.0 39.0 18.0 40.0 34 32.62242368994545 36.0 31.0 39.0 15.0 40.0 35 32.58717554279963 36.0 31.0 40.0 13.0 40.0 36 32.2093737091743 36.0 31.0 39.0 10.0 40.0 37 32.19451289282645 36.0 31.0 39.0 10.0 40.0 38 32.09377507466017 36.0 31.0 39.0 10.0 40.0 39 31.90298213378533 35.0 30.0 39.0 10.0 40.0 40 31.817807815934785 35.0 30.0 39.0 10.0 40.0 41 31.53867373148926 35.0 30.0 39.0 10.0 40.0 42 31.685874153099643 35.0 30.0 39.0 10.0 40.0 43 31.626654037346704 35.0 30.0 39.0 10.0 40.0 44 31.492322702864385 35.0 30.0 39.0 10.0 40.0 45 31.590375603572294 35.0 30.0 39.0 10.0 40.0 46 31.341105587761906 35.0 29.0 39.0 10.0 40.0 47 31.444737229431063 35.0 30.0 39.0 10.0 40.0 48 31.298574216246244 35.0 29.0 39.0 10.0 40.0 49 31.31702204433556 35.0 30.0 39.0 10.0 40.0 50 31.18623261688056 35.0 29.0 39.0 9.0 40.0 51 29.214843249248652 33.0 24.0 37.0 8.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 11.0 9 24.0 10 34.0 11 25.0 12 26.0 13 30.0 14 70.0 15 175.0 16 411.0 17 840.0 18 1702.0 19 2654.0 20 3848.0 21 5540.0 22 6893.0 23 8747.0 24 10393.0 25 12397.0 26 13341.0 27 13291.0 28 13256.0 29 14859.0 30 18104.0 31 22612.0 32 28821.0 33 35691.0 34 40365.0 35 41064.0 36 47206.0 37 47278.0 38 28422.0 39 3112.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.38874566163868 21.456075130210188 24.17945029223107 21.975728915920065 2 36.019200364636006 25.59336438436813 26.048447210866915 12.338988040128953 3 26.153849806049728 24.92533982841217 36.98016816936583 11.940642196172272 4 23.035689698558073 25.302082888221022 37.32723707512547 14.33499033809544 5 22.360780738862694 28.649564858205025 34.61881768674539 14.370836716186894 6 18.210672250155493 37.753120534039816 33.95838971422603 10.077817501578664 7 70.3842446859525 5.793581836569003 21.02924209836626 2.792931379112244 8 68.23607332602163 8.546631152639101 18.191680791563993 5.025614729775284 9 63.18790623916893 6.943277261051842 20.813926436585145 9.054890063194078 10 36.01777600524164 25.800133889783073 25.595738316692067 12.58635178828322 11 30.827647765417503 23.76258777614768 31.587068715845053 13.822695742589769 12 27.91768152273515 18.906234421069122 36.84034355548592 16.335740500709804 13 20.608343897332173 28.70107918963446 36.29671305330427 14.393863859729086 14 14.899511444727734 34.111745742352376 34.053584400415915 16.935158412503977 15 11.939692623242697 23.78632709938705 49.769491171345685 14.504489106024565 16 13.410818484386647 23.48792380626813 43.632401327502954 19.46885638184227 17 14.116351171060815 22.7657735933264 36.2957634803747 26.822111755238083 18 17.07925610456697 23.863717293147406 39.4087009367537 19.648325665531928 19 20.619976165719468 25.11121872937646 35.73337891283395 18.53542619207012 20 22.384757455334466 22.681261602594233 36.73209224151438 18.201888700556925 21 18.360942166260724 27.763375921679224 37.185038528921616 16.690643383138433 22 17.554992142284007 24.368177911984084 35.305358914828055 22.77147103090385 23 15.643027048584898 28.321487411036887 35.24268710147611 20.792798438902103 24 17.827519573072014 23.255041045289882 38.33995660451712 20.577482777120988 25 15.170614516121375 26.95362760598421 37.1518034763865 20.72395440150792 26 15.097022614079316 26.640268539224483 35.452067932447385 22.81064091424882 27 17.70597423808642 29.994160126483116 33.393393821128946 18.90647181430152 28 14.369174963560138 27.741298351066607 39.785918783027334 18.10360790234592 29 16.39770013436457 23.858019855569957 36.07783649303726 23.666443517028217 30 18.65792109998528 27.024608182469933 34.79069038699845 19.526780330546337 31 20.85998072366953 29.515575369977356 29.65682434325162 19.967619563101497 32 21.472455263245354 27.164907582814628 30.99975785890296 20.362879295037057 33 21.879584656800606 25.818887955142173 30.909548430593343 21.39197895746388 34 18.834066878421428 27.935248621932285 31.50374369127485 21.726940808371435 35 19.64903784522911 24.49518329131473 31.103261308226628 24.752517555229538 36 25.248194624467647 24.774832519074547 30.360932670531426 19.61604018592638 37 21.321473167442942 27.975368078206824 31.302434230204966 19.400724524145264 38 19.35965549494115 28.589979156874197 30.234402077665568 21.815963270519084 39 22.50796454294681 25.31585169569986 31.099463016508327 21.076720744845005 40 22.04932081796212 23.917130770435996 33.704378955564735 20.329169456037146 41 18.76664720042161 26.248569705774827 30.55464554816471 24.43013754563885 42 21.833292976483825 24.861481048898256 30.99026212960721 22.31496384501071 43 24.605096357913027 24.332568927125024 30.402951272665117 20.65938344229683 44 19.696516491707854 27.28194244638474 29.843415423913093 23.178125637994313 45 17.522944055910855 27.566814325257216 29.633085020012253 25.277156598819683 46 23.226316464170242 25.895328575972954 30.469658770967754 20.408696188889046 47 19.034901553026526 25.268135655988722 34.082308981535554 21.614653809449198 48 20.125486062643326 23.28613955873346 32.83979280318677 23.748581575436447 49 21.467470005365087 21.961247928744047 34.109371810028435 22.461910255862424 50 19.355619809990458 23.715346522901328 33.74663495093082 23.1823987161774 51 18.361654345957906 24.925577221644566 29.05859339761942 27.65417503477811 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 66.0 1 185.0 2 304.0 3 4049.0 4 7794.0 5 6624.0 6 5454.0 7 5632.0 8 5810.0 9 6104.5 10 6399.0 11 6337.5 12 6276.0 13 6129.5 14 5983.0 15 5708.5 16 5434.0 17 5432.0 18 5430.0 19 4965.5 20 4501.0 21 4238.5 22 3976.0 23 3901.5 24 3827.0 25 3690.0 26 3697.5 27 3842.0 28 4184.5 29 4527.0 30 5471.0 31 6415.0 32 7222.0 33 8029.0 34 9233.5 35 10438.0 36 10677.0 37 10916.0 38 12200.5 39 13485.0 40 15918.0 41 18351.0 42 22730.0 43 27109.0 44 31773.0 45 36437.0 46 44806.0 47 53175.0 48 46755.0 49 40335.0 50 37157.5 51 33980.0 52 28197.0 53 22414.0 54 19627.0 55 16840.0 56 15073.5 57 13307.0 58 12457.5 59 11608.0 60 10339.5 61 9071.0 62 7903.0 63 6735.0 64 5242.0 65 3749.0 66 3085.5 67 2422.0 68 1840.5 69 1259.0 70 1090.5 71 922.0 72 665.5 73 409.0 74 369.0 75 272.5 76 216.0 77 128.0 78 40.0 79 43.0 80 46.0 81 28.0 82 10.0 83 7.0 84 4.0 85 2.5 86 1.0 87 2.0 88 3.0 89 2.0 90 1.0 91 1.5 92 2.0 93 4.0 94 6.0 95 4.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 421242.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.575940999385914 #Duplication Level Percentage of deduplicated Percentage of total 1 83.87793846267238 32.35670405286172 2 7.6138043804067195 5.8741933711887135 3 2.4674456686191335 2.855521155955261 4 1.1674991283373184 1.801495099662995 5 0.677628372766605 1.3070076063677223 6 0.434405973918128 1.0054571531787893 7 0.29819164176829754 0.8052116225554709 8 0.22080592468594723 0.6814237058399961 9 0.18003199536008688 0.6250413267911187 >10 2.1675185885437718 20.963266465443272 >50 0.792260800408269 20.8507516353595 >100 0.09372170351832834 4.793542198687171 >500 0.003748868140733134 0.9501278835088911 >1k 0.004998490854310845 5.130256722599378 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGC 4441 1.054263345060559 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCG 4144 0.9837575550396209 No Hit GAATCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTC 4085 0.9697513543283909 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3357 0.7969290811457548 No Hit GCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTGC 1963 0.46600291518889375 RNA PCR Primer, Index 27 (95% over 23bp) GAACTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCT 1177 0.2794118345274213 RNA PCR Primer, Index 27 (95% over 21bp) CTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTGCT 1087 0.25804644361198553 RNA PCR Primer, Index 38 (95% over 24bp) GAATGATCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTC 1031 0.2447524225979366 No Hit GAATGACTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCT 814 0.19323809116849697 No Hit GAATGCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTT 741 0.1759083852037546 No Hit CCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTGC 687 0.16308915065449314 RNA PCR Primer, Index 38 (95% over 23bp) GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCGACTATGTCGTA 630 0.14955773640805048 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGACTATGT 555 0.13175324397852067 No Hit AGATTTGGGAAAAGATTTTTTTTACCAACCCTACATCTGATAGAGGGCTAA 515 0.12225751468277143 No Hit TCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTGC 495 0.1175096500348968 RNA PCR Primer, Index 27 (95% over 23bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.373932323937309E-4 0.0 0.0 0.3045755171611568 0.0 2 2.373932323937309E-4 0.0 0.0 1.3056627781655201 0.0 3 2.373932323937309E-4 0.0 0.0 1.601217352495715 0.0 4 2.373932323937309E-4 0.0 0.0 2.350905180395117 0.0 5 4.747864647874618E-4 0.0 0.0 4.506198337297801 0.0 6 4.747864647874618E-4 0.0 0.0 5.449361649598093 0.0 7 4.747864647874618E-4 0.0 0.0 6.230147990941075 0.0 8 4.747864647874618E-4 0.0 0.0 7.899971987598578 0.0 9 4.747864647874618E-4 0.0 0.0 8.417726627449305 0.0 10 4.747864647874618E-4 0.0 0.0 10.418951576528457 0.0 11 4.747864647874618E-4 0.0 0.0 11.63321796022239 0.0 12 4.747864647874618E-4 0.0 0.0 13.903884228068426 0.0 13 4.747864647874618E-4 0.0 0.0 14.63909106879181 0.0 14 4.747864647874618E-4 0.0 0.0 14.9310847446361 0.0 15 4.747864647874618E-4 0.0 0.0 15.392339795177119 0.0 16 4.747864647874618E-4 0.0 0.0 16.104044705893525 0.0 17 4.747864647874618E-4 0.0 0.0 16.765422251342457 0.0 18 0.0011869661619686547 0.0 0.0 18.086278196381176 0.0 19 0.0011869661619686547 0.0 0.0 18.608543307647384 0.0 20 0.0011869661619686547 0.0 0.0 19.12558576780093 0.0 21 0.0011869661619686547 0.0 0.0 19.537700419236447 0.0 22 0.0011869661619686547 0.0 0.0 19.886905864087627 0.0 23 0.0011869661619686547 0.0 0.0 20.26887157500914 0.0 24 0.0011869661619686547 0.0 0.0 20.545909477212625 0.0 25 0.0011869661619686547 0.0 0.0 20.773806980310606 0.0 26 0.0011869661619686547 0.0 0.0 21.012149785633913 0.0 27 0.0011869661619686547 0.0 0.0 21.228652413576995 0.0 28 0.0011869661619686547 0.0 0.0 21.439932390407414 0.0 29 0.0011869661619686547 0.0 0.0 21.686346565632107 0.0 30 0.0014243593943623855 0.0 0.0 21.962909681370803 0.0 31 0.0014243593943623855 0.0 0.0 22.23448753922923 0.0 32 0.0014243593943623855 0.0 0.0 22.477578209200413 0.0 33 0.0018991458591498473 0.0 0.0 22.730876788164522 0.0 34 0.0018991458591498473 0.0 0.0 22.993196309959597 0.0 35 0.0018991458591498473 0.0 0.0 23.229402576191358 0.0 36 0.0018991458591498473 0.0 0.0 23.457062686056947 0.0 37 0.0018991458591498473 0.0 0.0 23.7124978041126 0.0 38 0.0018991458591498473 0.0 0.0 23.96508420337953 0.0 39 0.0018991458591498473 0.0 0.0 24.245208217604134 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGATCGG 35 1.2094824E-7 45.000004 2 GTTGACG 20 7.0281903E-4 45.000004 1 GTCATGC 20 7.0281903E-4 45.000004 24 CTATGCA 35 1.2094824E-7 45.000004 29 ACCGGAC 40 6.7975634E-9 45.000004 43 ATTAGCG 20 7.0281903E-4 45.000004 1 CTCCGTC 20 7.0281903E-4 45.000004 21 CTCAAAC 20 7.0281903E-4 45.000004 34 CGACGGT 20 7.0281903E-4 45.000004 28 AGCCCTT 20 7.0281903E-4 45.000004 25 CGTGACC 35 1.2094824E-7 45.000004 11 GACCGTA 20 7.0281903E-4 45.000004 41 AACCACG 20 7.0281903E-4 45.000004 12 TAGCGCG 20 7.0281903E-4 45.000004 2 ACCGAAC 20 7.0281903E-4 45.000004 11 GTGATGA 20 7.0281903E-4 45.000004 45 GTGATCG 20 7.0281903E-4 45.000004 1 CACGACG 20 7.0281903E-4 45.000004 26 TAACGGG 80 0.0 45.000004 3 CCTCGGA 20 7.0281903E-4 45.000004 23 >>END_MODULE