##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548193_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 556625 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.342846620256008 30.0 25.0 31.0 16.0 33.0 2 27.406172917134516 30.0 25.0 31.0 16.0 33.0 3 27.275512238940042 30.0 25.0 31.0 16.0 34.0 4 31.889933078823265 33.0 30.0 35.0 19.0 37.0 5 33.04730653492028 35.0 32.0 35.0 28.0 37.0 6 31.803190657983382 35.0 32.0 35.0 25.0 37.0 7 33.54566539411633 35.0 33.0 35.0 30.0 37.0 8 32.969557601616884 35.0 33.0 36.0 27.0 37.0 9 35.63171614641814 37.0 34.0 39.0 30.0 39.0 10 35.159306534920276 37.0 34.0 39.0 30.0 39.0 11 35.537609701324946 37.0 35.0 39.0 30.0 39.0 12 35.497067145744445 37.0 34.0 39.0 30.0 39.0 13 35.3318589714799 37.0 34.0 39.0 30.0 39.0 14 35.857884572198515 38.0 34.0 40.0 29.0 41.0 15 36.37750370536717 38.0 35.0 40.0 31.0 41.0 16 36.068085335728725 37.0 34.0 40.0 31.0 41.0 17 35.63255692791377 37.0 34.0 39.0 30.0 40.0 18 35.66383651470918 37.0 34.0 39.0 30.0 40.0 19 35.18710981360881 37.0 34.0 39.0 29.0 40.0 20 35.14862789130923 36.0 34.0 39.0 29.0 40.0 21 35.50177588142825 37.0 34.0 39.0 30.0 40.0 22 36.01709768695262 37.0 34.0 40.0 31.0 40.0 23 36.08819222995733 37.0 34.0 40.0 31.0 41.0 24 36.07149696833595 38.0 35.0 40.0 31.0 41.0 25 35.33737435436784 37.0 34.0 40.0 27.0 41.0 26 35.49047383786212 37.0 34.0 40.0 29.0 41.0 27 35.70406647204132 37.0 34.0 40.0 30.0 41.0 28 35.47950595104424 37.0 34.0 40.0 29.0 41.0 29 35.50373411183472 37.0 34.0 40.0 29.0 41.0 30 34.97195778127105 37.0 34.0 40.0 26.0 41.0 31 35.06657624073658 37.0 34.0 40.0 27.0 41.0 32 34.65893914215136 37.0 34.0 40.0 25.0 41.0 33 34.587178082191784 37.0 34.0 40.0 24.0 41.0 34 34.28788861441725 38.0 34.0 40.0 22.0 41.0 35 34.2232382663373 38.0 34.0 40.0 21.0 41.0 36 33.889325847743095 37.0 33.0 40.0 18.0 41.0 37 34.04908690770267 38.0 34.0 40.0 18.0 41.0 38 33.89925892656636 37.0 33.0 40.0 18.0 41.0 39 33.75206108241635 37.0 33.0 40.0 18.0 41.0 40 33.58941118347182 37.0 33.0 40.0 17.0 41.0 41 33.09507118796317 37.0 32.0 40.0 15.0 41.0 42 33.34974354367842 37.0 33.0 40.0 15.0 41.0 43 33.30901414776555 37.0 33.0 40.0 15.0 41.0 44 33.405623175387376 37.0 33.0 40.0 15.0 41.0 45 33.52082281607905 37.0 33.0 40.0 17.0 41.0 46 33.25443161913317 37.0 33.0 40.0 15.0 41.0 47 33.09100381765102 36.0 32.0 40.0 15.0 40.0 48 33.11934426229508 37.0 32.0 40.0 15.0 40.0 49 33.21880440152706 37.0 33.0 40.0 15.0 40.0 50 33.03021064450932 36.0 32.0 40.0 14.0 40.0 51 30.82026678643611 34.0 28.0 38.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 5.0 10 18.0 11 13.0 12 18.0 13 29.0 14 38.0 15 67.0 16 154.0 17 429.0 18 977.0 19 2010.0 20 3647.0 21 5582.0 22 6924.0 23 7613.0 24 8175.0 25 9678.0 26 10962.0 27 11163.0 28 10984.0 29 12038.0 30 15107.0 31 21412.0 32 30099.0 33 44177.0 34 57292.0 35 61070.0 36 81227.0 37 90624.0 38 56700.0 39 8391.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.042802604985404 22.997529755221198 23.415764653042892 14.543902986750506 2 28.936357511789808 36.010599595778125 22.235796092521895 12.817246799910173 3 22.557197395014597 35.57619582304065 29.045587244554234 12.821019537390525 4 20.667594879856278 24.909050078598696 40.02335504154503 14.399999999999999 5 27.271861666292384 27.04549741747137 28.92773411183472 16.754906804401525 6 17.371300247024475 40.904738378621154 29.136492252414104 12.587469121940265 7 63.799505951044246 7.72512912643162 23.98526835841006 4.49009656411408 8 58.57749831574219 13.850078598697507 16.807725129126432 10.764697956433865 9 54.0879407141253 8.54201661801033 19.86867280485066 17.5013698630137 10 38.022546597799234 22.35724230855603 23.42995733213564 16.190253761509098 11 30.14686728048507 23.149337525263867 28.623220300920728 18.08057489333034 12 23.805254884347633 17.996137435436786 35.16586570851112 23.032741971704468 13 21.333213563889515 28.230136986301368 37.982304064675496 12.454345385133617 14 14.340175162811589 37.66701100381765 29.125713002470242 18.867100830900515 15 8.927195149337527 23.99407141253088 49.62982259151134 17.448910846620254 16 9.011991915562541 26.564563215809567 37.39914664271278 27.02429822591511 17 9.959667639793397 27.28210195373905 32.589086009431846 30.16914439703571 18 14.130159443072085 24.997260273972604 35.294677745340216 25.577902537615095 19 15.674825960026947 29.512867729620478 31.481877386031886 23.33042892432068 20 19.30437907028969 27.220300920727595 34.38832247922748 19.08699752975522 21 14.921356388951267 34.04105097686953 33.0222322030092 18.015360431169995 22 13.9695486189086 25.044688973725577 32.29894453177633 28.686817875589487 23 13.815225690545699 33.20925218953514 30.298675050527734 22.67684706939142 24 17.385313271951492 25.705097686952616 31.16281158769369 25.746777453402203 25 12.725802829553109 34.107702672355714 28.149112957556703 25.017381540534473 26 12.597529755221199 30.55989220750056 31.401751628115875 25.440826409162366 27 18.35526611273299 31.746148663822144 26.48533572872221 23.41324949472266 28 11.06615764653043 29.405614192679092 37.769413878284304 21.758814282506176 29 13.848461711205928 27.81441724679991 32.10940938693016 26.227711655064002 30 16.293734560970133 28.460992589265665 32.3469121940265 22.898360655737704 31 20.219896698854704 26.742600494048958 28.76299124185942 24.27451156523692 32 19.436424882101953 30.54659779923647 29.3824388052998 20.63453851336178 33 19.532719514933753 23.7366269930384 28.604356613518977 28.12629687850887 34 22.067100830900515 24.541298001347407 30.959443072086234 22.432158095665844 35 18.089737255782616 22.066741522569057 27.59883224792275 32.24468897372558 36 23.98347181675275 23.636559622726253 31.263956883000226 21.11601167752077 37 21.130743319110714 20.0609027621828 34.7294857399506 24.078868178755894 38 20.12971030765776 21.195598472939594 33.043611048731194 25.631080170671456 39 28.272176061082416 18.970222322030093 33.221827981136315 19.53577363575118 40 24.337390523242757 18.316640467100832 34.11704468897373 23.228924320682687 41 25.818100157197392 20.207680215585 25.723781720188637 28.250437907028967 42 25.653177633056366 19.125443521221648 29.84109589041096 25.380282955311028 43 27.674107343364025 18.373231529306086 28.980732090725354 24.971929036604536 44 21.36591062205255 20.70154951717943 31.075858971479903 26.85668088928812 45 19.453492027846394 18.935728722209745 30.68061980687177 30.930159443072085 46 28.43458342690321 20.373860318886145 29.705636649449808 21.485919604760838 47 18.749966314843924 19.01621378845722 38.20291938019313 24.030900516505728 48 20.541477655513138 19.492836290141476 31.049809117448913 28.915876936896474 49 22.641994161239616 13.990388502133394 37.3447114304963 26.0229059061307 50 21.039119694587917 16.310262744217383 34.833505501908824 27.817112059285876 51 18.01625870199865 16.94048955760162 28.047428699752974 36.995823040646755 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1126.0 1 1049.0 2 972.0 3 3814.0 4 6656.0 5 4877.0 6 3098.0 7 3286.5 8 3475.0 9 3818.0 10 4161.0 11 4374.5 12 4588.0 13 4705.0 14 4822.0 15 4842.5 16 4863.0 17 4923.5 18 4984.0 19 5043.0 20 5102.0 21 4683.0 22 4264.0 23 3986.5 24 3709.0 25 3933.0 26 4464.5 27 4772.0 28 5183.5 29 5595.0 30 5660.0 31 5725.0 32 5809.0 33 5893.0 34 6104.0 35 6315.0 36 6810.0 37 7305.0 38 8439.0 39 9573.0 40 13934.5 41 18296.0 42 23632.0 43 28968.0 44 36722.5 45 44477.0 46 78991.0 47 113505.0 48 97394.5 49 81284.0 50 72144.0 51 63004.0 52 50161.0 53 37318.0 54 30195.0 55 23072.0 56 18767.5 57 14463.0 58 12240.5 59 10018.0 60 8850.5 61 7683.0 62 6286.0 63 4889.0 64 4094.5 65 3300.0 66 2575.5 67 1851.0 68 1508.0 69 1165.0 70 987.0 71 809.0 72 708.0 73 607.0 74 463.0 75 271.5 76 224.0 77 160.5 78 97.0 79 70.5 80 44.0 81 40.5 82 37.0 83 32.5 84 28.0 85 16.5 86 5.0 87 4.0 88 3.0 89 1.5 90 0.0 91 2.0 92 4.0 93 2.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 556625.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.60197839192584 #Duplication Level Percentage of deduplicated Percentage of total 1 76.9918463627671 25.100865114734074 2 9.58523745536019 6.249954088022623 3 3.9166352595199516 3.8307017429977304 4 2.059257362684124 2.6854345616656805 5 1.3080139098487171 2.1321920612613154 6 0.8662117314923395 1.694412969176755 7 0.6413877179385382 1.4637355964755194 8 0.42838314771788927 1.1172910500291042 9 0.3751970025995889 1.1008948114320427 >10 3.178975360086721 23.601692929178085 >50 0.5564791509303921 11.896464316009931 >100 0.07735060197932443 4.416203839694897 >500 0.006121270660234308 1.416371020314603 >1k 0.0066777498111647 5.638270599377127 >5k 5.564791509303916E-4 0.9127401822982921 >10k+ 0.001669437452791175 6.742775117332206 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTC 13719 2.4646754996631484 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGC 12798 2.299214013024927 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCG 10649 1.913137210869077 No Hit GAACTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCT 5031 0.9038401077924995 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3982 0.7153828879407141 No Hit GAATGATCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTC 3927 0.7055019088255109 No Hit GCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC 3816 0.6855602964293734 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACTTTGCGT 3245 0.5829777677969908 No Hit GAATGACTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCT 2991 0.5373456097013249 No Hit CTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGCT 2795 0.5021333932180553 No Hit CCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC 2508 0.45057264765326743 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACTTTGCGTCGTA 2355 0.42308556029642935 No Hit GAATGCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTT 1501 0.2696609027621828 No Hit TCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC 1470 0.26409162362452276 No Hit ACTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC 1298 0.2331911071187963 No Hit GAATGATCCGGCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGC 1190 0.2137884572198518 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 964 0.17318661576465305 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCACTTTGCGTCGT 935 0.167976644958455 No Hit GAATGATCCCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCG 784 0.14084886593307883 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATG 707 0.12701549517179428 No Hit CGCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTG 691 0.12414102852009881 No Hit ACCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTG 678 0.12180552436559622 No Hit AGCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTG 654 0.117493824388053 No Hit AAAACTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTC 645 0.1158769368964743 No Hit AGCCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCT 615 0.11048731192454524 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 578 0.10384010779249944 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.796541657309679E-4 0.0 0.0 0.5513586346283404 0.0 2 1.796541657309679E-4 0.0 0.0 2.3527509544127554 0.0 3 1.796541657309679E-4 0.0 0.0 3.2201212665618684 0.0 4 1.796541657309679E-4 0.0 0.0 5.581675275095441 0.0 5 1.796541657309679E-4 0.0 0.0 10.973096788681788 0.0 6 1.796541657309679E-4 0.0 0.0 13.344531776330564 0.0 7 1.796541657309679E-4 0.0 0.0 15.3316865034808 0.0 8 1.796541657309679E-4 0.0 0.0 19.25766898719964 0.0 9 1.796541657309679E-4 0.0 0.0 20.390388502133394 0.0 10 1.796541657309679E-4 0.0 0.0 24.808084437457893 0.0 11 1.796541657309679E-4 0.0 0.0 28.141387828430272 0.0 12 1.796541657309679E-4 0.0 0.0 33.75288569503705 0.0 13 1.796541657309679E-4 0.0 0.0 35.15239164608129 0.0 14 1.796541657309679E-4 0.0 0.0 35.61751628115877 0.0 15 1.796541657309679E-4 0.0 0.0 36.67567931731417 0.0 16 1.796541657309679E-4 0.0 0.0 38.05290815180777 0.0 17 1.796541657309679E-4 0.0 0.0 39.29216258701999 0.0 18 0.0023355041545025826 0.0 0.0 41.575207725129125 0.0 19 0.0023355041545025826 0.0 0.0 43.15490680440153 0.0 20 0.0023355041545025826 0.0 0.0 44.24343139456546 0.0 21 0.0023355041545025826 0.0 0.0 44.97677969907927 0.0 22 0.0023355041545025826 0.0 0.0 45.63790702896923 0.0 23 0.0023355041545025826 0.0 0.0 46.246934650797215 0.0 24 0.0023355041545025826 0.0 0.0 46.6755894902313 0.0 25 0.0023355041545025826 0.0 0.0 47.01585448012576 0.0 26 0.0023355041545025826 0.0 0.0 47.38396586570851 0.0 27 0.0025151583202335506 0.0 0.0 47.749921401302494 0.0 28 0.0025151583202335506 0.0 0.0 48.03629014147766 0.0 29 0.0025151583202335506 0.0 0.0 48.35805075230182 0.0 30 0.0025151583202335506 0.0 0.0 48.71825735459241 0.0 31 0.0025151583202335506 0.0 0.0 49.05852234448686 0.0 32 0.0025151583202335506 0.0 0.0 49.332135638895124 0.0 33 0.0025151583202335506 0.0 0.0 49.61958230406468 0.0 34 0.0025151583202335506 0.0 0.0 49.915113406692114 0.0 35 0.0025151583202335506 0.0 0.0 50.21926790927465 0.0 36 0.0025151583202335506 0.0 0.0 50.49431843700876 0.0 37 0.0025151583202335506 0.0 0.0 50.77601616887492 0.0 38 0.002694812485964518 0.0 0.0 51.027711655064 0.0 39 0.002694812485964518 0.0 0.0 51.30761284527285 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCCGGAT 20 7.030146E-4 45.000004 21 TCGCCAA 20 7.030146E-4 45.000004 40 CAGGTCT 40 6.8048394E-9 45.000004 5 ACTATTA 30 2.163477E-6 45.000004 17 TCGTTTG 20 7.030146E-4 45.000004 12 CGAACTC 20 7.030146E-4 45.000004 13 GTACAAT 20 7.030146E-4 45.000004 24 CATGCTT 20 7.030146E-4 45.000004 10 CGACGGT 20 7.030146E-4 45.000004 28 TGGACAG 20 7.030146E-4 45.000004 1 ACCGCAA 20 7.030146E-4 45.000004 29 CGCATTG 20 7.030146E-4 45.000004 28 CGTTGGT 20 7.030146E-4 45.000004 14 CGACATG 20 7.030146E-4 45.000004 18 CACGACG 20 7.030146E-4 45.000004 26 TAACGAT 20 7.030146E-4 45.000004 13 GCGTTGC 20 7.030146E-4 45.000004 20 GCCGATT 20 7.030146E-4 45.000004 9 ACGATAT 20 7.030146E-4 45.000004 15 AAGCCGT 20 7.030146E-4 45.000004 12 >>END_MODULE