SRR3548192_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548192_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	877689
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGC	27669	3.15248339673848	No Hit
GAATCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTC	21879	2.492796423334461	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCG	21500	2.4496148407921257	No Hit
GAACTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCT	7981	0.9093198160168351	TruSeq Adapter, Index 8 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC	6649	0.7575576314617136	TruSeq Adapter, Index 13 (95% over 23bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6002	0.6838413150899691	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTC	5263	0.5996429259111143	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCT	4289	0.48866967684453144	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCAGGACTCTCGTA	3402	0.3876088227151075	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCAGGACTCT	2895	0.32984348670200947	No Hit
CTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGCT	2303	0.2623936268997333	TruSeq Adapter, Index 8 (95% over 24bp)
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1295	0.1475465683174792	No Hit
CCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC	1248	0.1421915963399336	TruSeq Adapter, Index 13 (95% over 23bp)
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCAGGACTCTCGT	1157	0.13182345910681348	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTT	1126	0.12829145631311317	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTAT	1094	0.12464551794542258	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAACGAG	135	0.0	45.000004	14
TCACGGA	20	7.032374E-4	45.0	17
CTTCGGA	20	7.032374E-4	45.0	12
GTGCACG	40	6.8121153E-9	45.0	1
CGGAATA	20	7.032374E-4	45.0	31
CTATGCG	25	3.8900493E-5	45.0	1
TCGTTAG	35	1.2114833E-7	45.0	1
GCGAATG	35	1.2114833E-7	45.0	1
CTATCGG	20	7.032374E-4	45.0	27
ACGCAAT	20	7.032374E-4	45.0	23
TAGGTTC	20	7.032374E-4	45.0	36
ATAATAG	20	7.032374E-4	45.0	1
CATGACG	20	7.032374E-4	45.0	1
GACGTAC	20	7.032374E-4	45.0	21
AGCTTAG	110	0.0	45.0	1
TAGCGAG	35	1.2114833E-7	45.0	1
CACGCTA	25	3.8900493E-5	45.0	22
CACGCAT	20	7.032374E-4	45.0	43
CAATTGT	25	3.8900493E-5	45.0	13
TCGATGT	25	3.8900493E-5	45.0	16