SRR3548186_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548186_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	662688
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGC	6310	0.9521826259114395	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCG	5610	0.8465522236708677	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5268	0.7949442271476169	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTC	4849	0.7317168863779033	No Hit
GCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGC	1850	0.27916606306436814	No Hit
GAACTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCT	1569	0.23676300159351008	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTC	1173	0.17700637404027234	No Hit
CTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGCT	1000	0.1509005746293882	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCT	929	0.14018663383070162	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTAGGAATT	763	0.11513713844222319	No Hit
GTGCACGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC	704	0.10623400453908928	No Hit
CCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGC	678	0.10231058959872519	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGAG	30	2.1641044E-6	45.000004	1
TCTTGCG	30	2.1641044E-6	45.000004	1
TAGCGCA	30	2.1641044E-6	45.000004	13
TTCACGG	30	2.1641044E-6	45.000004	2
TAAACGG	60	0.0	45.000004	2
ATGCGCC	30	2.1641044E-6	45.000004	37
TCGACCG	30	2.1641044E-6	45.000004	19
TCACGAC	20	7.031122E-4	45.0	25
AACCGTC	20	7.031122E-4	45.0	33
CGGGTCC	45	3.8380676E-10	45.0	6
CTATGCG	20	7.031122E-4	45.0	1
GGCAGTC	35	1.210883E-7	45.0	27
AACCGGA	25	3.889011E-5	45.0	26
AACCGAT	25	3.889011E-5	45.0	35
ACCGGTC	20	7.031122E-4	45.0	17
CTCGTCC	20	7.031122E-4	45.0	37
ATTAGCG	40	6.8066583E-9	45.0	1
ACTTGGC	40	6.8066583E-9	45.0	28
GCTATCG	35	1.210883E-7	45.0	1
CCGTGTC	20	7.031122E-4	45.0	31