##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548186_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 662688 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.647481167608287 28.0 25.0 31.0 16.0 33.0 2 27.423636764208798 30.0 25.0 31.0 16.0 33.0 3 27.30918924139263 30.0 25.0 31.0 16.0 33.0 4 30.242035467671062 33.0 28.0 35.0 19.0 37.0 5 31.766884265295282 33.0 32.0 35.0 25.0 37.0 6 30.73192663817664 33.0 28.0 35.0 17.0 37.0 7 31.730736032642813 33.0 30.0 35.0 25.0 35.0 8 33.338872893427975 35.0 33.0 35.0 29.0 37.0 9 34.400259247187215 37.0 33.0 38.0 28.0 39.0 10 33.81232344632768 35.0 32.0 39.0 27.0 39.0 11 33.929627517021586 37.0 32.0 39.0 26.0 39.0 12 33.358821949393985 35.0 31.0 38.0 25.0 39.0 13 33.598622579554785 35.0 32.0 39.0 25.0 39.0 14 34.25746052440968 37.0 32.0 39.0 24.0 40.0 15 35.45205586942875 37.0 33.0 40.0 27.0 41.0 16 35.40723538075233 37.0 34.0 40.0 29.0 41.0 17 35.0321071152639 36.0 33.0 39.0 27.0 40.0 18 34.84042867835241 36.0 33.0 39.0 27.0 40.0 19 34.27963536385147 36.0 32.0 39.0 26.0 40.0 20 34.39532178038534 35.0 32.0 39.0 27.0 40.0 21 34.41102449418128 35.0 33.0 39.0 27.0 40.0 22 34.738659821816604 36.0 33.0 39.0 27.0 40.0 23 35.17226809599691 36.0 33.0 39.0 29.0 40.0 24 34.80699363803178 36.0 33.0 39.0 27.0 40.0 25 33.8812714278816 35.0 32.0 39.0 24.0 40.0 26 34.00439573373895 35.0 33.0 39.0 24.0 40.0 27 34.5352624462794 36.0 33.0 39.0 26.0 40.0 28 34.464212419720894 36.0 33.0 39.0 25.0 40.0 29 34.59633190883191 36.0 33.0 39.0 25.0 40.0 30 33.999447703896855 36.0 33.0 39.0 23.0 40.0 31 33.93400514269158 36.0 33.0 39.0 23.0 40.0 32 33.40524952919021 36.0 32.0 39.0 21.0 40.0 33 33.385979525810036 36.0 33.0 39.0 19.0 40.0 34 33.06331033608576 36.0 32.0 39.0 17.0 40.0 35 32.980005673861605 36.0 32.0 40.0 15.0 41.0 36 32.64665423245932 36.0 32.0 40.0 12.0 41.0 37 32.61608932106814 36.0 32.0 40.0 12.0 41.0 38 32.55095610604085 36.0 31.0 40.0 11.0 40.0 39 32.34979356801391 36.0 31.0 39.0 10.0 40.0 40 32.31159157854073 36.0 31.0 39.0 10.0 40.0 41 32.165293471437536 36.0 31.0 39.0 10.0 40.0 42 32.21630088367377 36.0 31.0 39.0 10.0 40.0 43 32.16763393935004 36.0 31.0 39.0 10.0 40.0 44 32.071525363368586 35.0 31.0 39.0 10.0 40.0 45 32.08966210343329 35.0 31.0 39.0 10.0 40.0 46 31.843983895890677 35.0 31.0 39.0 10.0 40.0 47 32.000202206770005 35.0 31.0 39.0 10.0 40.0 48 31.833959570718044 35.0 31.0 39.0 10.0 40.0 49 31.897888599159785 35.0 31.0 39.0 10.0 40.0 50 31.823662115505336 35.0 31.0 39.0 10.0 40.0 51 30.089524783910377 34.0 27.0 38.0 8.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 20.0 9 34.0 10 56.0 11 51.0 12 36.0 13 48.0 14 95.0 15 251.0 16 558.0 17 1237.0 18 2155.0 19 3471.0 20 5246.0 21 7058.0 22 9535.0 23 12202.0 24 15189.0 25 18790.0 26 20035.0 27 19758.0 28 20318.0 29 22570.0 30 27727.0 31 35594.0 32 44680.0 33 56346.0 34 64667.0 35 64356.0 36 75553.0 37 78850.0 38 50535.0 39 5666.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.507551064754455 20.887808440774542 26.08044811434642 23.524192380124585 2 35.49000434593655 24.451325510647546 28.13194142643295 11.926728716982954 3 25.670753054227628 23.642649331208652 38.34036530011106 12.346232314452653 4 23.807130957554687 25.59862257955478 37.184919600173835 13.409326862716695 5 21.381856922111158 29.888122313969774 35.28749577478391 13.442524989135157 6 18.61962190352021 37.84842942681926 33.29304287990729 10.238905789753247 7 74.86766019605002 4.3681189337969 18.987970206190546 1.7762506639625284 8 74.21094089526294 6.3532159930465015 16.21773745714424 3.2181056545463327 9 69.80992563619682 5.562346081413878 17.932420686657974 6.695307595731324 10 36.97622410546139 27.104761214930704 23.891333478197886 12.027681201410015 11 31.992732628325847 22.072981553913756 32.697136510695834 13.237149307064561 12 29.45458496305954 19.60590805929789 34.93287942440485 16.006627553237724 13 19.13540006760346 30.020311217345114 37.04850548070887 13.795783234342556 14 14.922557825100197 34.497078564875174 34.198597228258244 16.381766381766383 15 13.117937853107344 22.401643005456563 50.177609976338786 14.3028091650973 16 14.804855376889275 21.469077454246946 44.9982495533343 18.727817615529478 17 14.58182432758704 21.912725143657347 37.0537870008209 26.451663527934716 18 18.137796368728573 23.640084021439954 39.19566975711044 19.02644985272104 19 21.72983364720653 25.055229610314356 35.04001883239171 18.1749179100874 20 24.47863851465546 23.552712588729538 35.62551306195374 16.343135834661258 21 18.897278960838282 27.826820464532332 36.8894562750495 16.386444299579892 22 18.50599377082428 22.953637307450865 35.189410401274806 23.350958520450046 23 16.978578154425612 28.88719880245304 34.89470157902361 19.239521464097738 24 18.11878289632527 23.13471799700613 39.254370080641266 19.49212902602733 25 15.143476266357622 27.201186682118884 37.94349678883577 19.711840262687723 26 15.362131198995604 29.86714713409629 35.33231324544884 19.43840842145927 27 17.43278888406007 29.949991549567823 35.06174851513835 17.555471051233763 28 14.394707615046599 26.819559128881167 41.97480564005988 16.81092761601236 29 16.73774083731711 23.957578830460186 38.69649065623642 20.608189675986285 30 16.961073687768604 27.013919069003816 37.29568062195181 18.729326621275774 31 22.844536191993818 27.532866145154284 31.102117436863196 18.5204802259887 32 24.187400405620746 27.7347711140084 30.925412863972184 17.152415616398667 33 21.212546477376986 27.152898498237484 31.448283355063015 20.186271669322515 34 18.472041141532667 28.392697619392536 32.12024361388768 21.015017625187117 35 17.989913805591772 26.665187841035298 33.85016780143899 21.49473055193394 36 24.071508764305374 26.17883528900478 31.54999034236322 18.19966560432662 37 20.378820802549615 28.988151286880097 32.959703510550966 17.673324400019315 38 20.84359457240813 30.56189337968999 28.980606258148633 19.613905789753247 39 22.470000965763678 27.54493819112463 30.772701482447246 19.212359360664447 40 23.485712733594088 25.716928630064224 30.871843159978752 19.925515476362936 41 16.597252402337148 27.582814235356608 31.809841131875032 24.010092230431212 42 20.932927712588732 26.973477715003142 30.768023564633733 21.325571007774396 43 22.06709643150321 25.10638490511372 31.848471678980157 20.97804698440292 44 20.653459848375103 28.210409725240233 30.432269786083342 20.70386064030132 45 19.179764836544496 29.885255203051813 28.164083248829012 22.77089671157468 46 23.25408035153798 28.587962962962965 29.385321599304646 18.77263508619441 47 19.330363610024627 26.66745134965474 33.556062581486316 20.446122458834324 48 20.716385387995555 26.049815297696654 31.297986382732145 21.935812931575644 49 19.379557197353808 24.599208073784347 34.30271862475252 21.718516104109327 50 19.12453522623014 27.09102926263943 31.003881162779468 22.78055434835096 51 17.499034236322373 28.028574532811824 28.784888212854316 25.687503018011494 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 62.0 1 232.5 2 403.0 3 6173.5 4 11944.0 5 10032.5 6 8121.0 7 8504.5 8 8888.0 9 9266.5 10 9645.0 11 9581.5 12 9518.0 13 9189.5 14 8861.0 15 8579.5 16 8298.0 17 7804.0 18 7310.0 19 7108.0 20 6906.0 21 6669.5 22 6433.0 23 6322.5 24 6212.0 25 6211.0 26 6503.5 27 6797.0 28 8408.5 29 10020.0 30 10937.0 31 11854.0 32 14034.5 33 16215.0 34 16428.0 35 16641.0 36 17984.5 37 19328.0 38 23015.0 39 26702.0 40 32476.5 41 38251.0 42 44865.5 43 51480.0 44 67003.5 45 82527.0 46 72321.0 47 62115.0 48 57101.5 49 52088.0 50 46102.0 51 40116.0 52 37226.5 53 34337.0 54 29272.0 55 24207.0 56 21851.5 57 19496.0 58 18264.0 59 17032.0 60 15261.0 61 13490.0 62 11418.5 63 9347.0 64 7389.5 65 5432.0 66 4052.5 67 2673.0 68 2043.0 69 1413.0 70 1124.5 71 836.0 72 769.0 73 702.0 74 532.0 75 248.0 76 134.0 77 135.0 78 136.0 79 124.5 80 113.0 81 64.5 82 16.0 83 11.0 84 6.0 85 5.0 86 4.0 87 4.0 88 4.0 89 3.0 90 2.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 662688.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.13847231482475 #Duplication Level Percentage of deduplicated Percentage of total 1 83.45283437381288 27.654994414902532 2 7.759392211456154 5.142688079584131 3 2.532059688144609 2.517257696251918 4 1.1744582040661973 1.5567900272146593 5 0.6680250375396769 1.1068664606059175 6 0.4303784629822666 0.8557250868260803 7 0.299222229913931 0.6941037307388049 8 0.21445897489545035 0.5685474241790863 9 0.18106022194556254 0.5400053237033144 >10 1.9110146878048528 16.328289000174045 >50 1.0646064404478979 25.224638874649575 >100 0.3059695675302166 12.891190530553601 >500 0.003259949730154515 0.8092971847843683 >1k 0.0018628284172311515 1.4570127234075558 >5k 0.0013971213129233635 2.6525934424244326 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGC 6310 0.9521826259114395 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCG 5610 0.8465522236708677 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5268 0.7949442271476169 No Hit GAATCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTC 4849 0.7317168863779033 No Hit GCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGC 1850 0.27916606306436814 No Hit GAACTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCT 1569 0.23676300159351008 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTC 1173 0.17700637404027234 No Hit CTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGCT 1000 0.1509005746293882 No Hit GAATGACTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCT 929 0.14018663383070162 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTAGGAATT 763 0.11513713844222319 No Hit GTGCACGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC 704 0.10623400453908928 No Hit CCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGC 678 0.10231058959872519 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.17730817518953113 0.0 2 0.0 0.0 0.0 0.7664240185426626 0.0 3 0.0 0.0 0.0 0.9586713506205031 0.0 4 0.0 0.0 0.0 1.4987445072190835 0.0 5 0.0 0.0 0.0 2.995074605244097 0.0 6 0.0 0.0 0.0 3.575589115843353 0.0 7 0.0 0.0 0.0 4.1213964942778505 0.0 8 0.0 0.0 0.0 5.406616688396349 0.0 9 0.0 0.0 0.0 5.861431020329325 0.0 10 0.0 0.0 0.0 7.576265150417693 0.0 11 0.0 0.0 0.0 8.517130233231928 0.0 12 0.0 0.0 0.0 10.411837848278527 0.0 13 0.0 0.0 0.0 10.91192235260032 0.0 14 0.0 0.0 0.0 11.07700758124487 0.0 15 0.0 0.0 0.0 11.360700661548119 0.0 16 0.0 0.0 0.0 11.82698343715293 0.0 17 0.0 0.0 0.0 12.250561350137621 0.0 18 0.002565309768699599 0.0 0.0 13.141780143898789 0.0 19 0.002565309768699599 0.0 0.0 13.5505698005698 0.0 20 0.002565309768699599 0.0 0.0 13.917861799217732 0.0 21 0.002565309768699599 0.0 0.0 14.217399439857067 0.0 22 0.002565309768699599 0.0 0.0 14.494000193152736 0.0 23 0.002565309768699599 0.0 0.0 14.78403109759042 0.0 24 0.002565309768699599 0.0 0.0 14.999969819885074 0.0 25 0.002565309768699599 0.0 0.0 15.168827562895359 0.0 26 0.002565309768699599 0.0 0.0 15.344777632913226 0.0 27 0.002565309768699599 0.0 0.0 15.50880655753537 0.0 28 0.002565309768699599 0.0 0.0 15.689887247090637 0.0 29 0.002565309768699599 0.0 0.0 15.873231445265343 0.0 30 0.002565309768699599 0.0 0.0 16.106825534791636 0.0 31 0.002565309768699599 0.0 0.0 16.30299628180984 0.0 32 0.002565309768699599 0.0 0.0 16.49343280699213 0.0 33 0.002565309768699599 0.0 0.0 16.687189144816262 0.0 34 0.002565309768699599 0.0 0.0 16.877022067700032 0.0 35 0.002565309768699599 0.0 0.0 17.083906755516924 0.0 36 0.002565309768699599 0.0 0.0 17.26830725771404 0.0 37 0.002565309768699599 0.0 0.0 17.456782075426144 0.0 38 0.002565309768699599 0.0 0.0 17.65416002704138 0.0 39 0.002565309768699599 0.0 0.0 17.856970399343282 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACCGAG 30 2.1641044E-6 45.000004 1 TCTTGCG 30 2.1641044E-6 45.000004 1 TAGCGCA 30 2.1641044E-6 45.000004 13 TTCACGG 30 2.1641044E-6 45.000004 2 TAAACGG 60 0.0 45.000004 2 ATGCGCC 30 2.1641044E-6 45.000004 37 TCGACCG 30 2.1641044E-6 45.000004 19 TCACGAC 20 7.031122E-4 45.0 25 AACCGTC 20 7.031122E-4 45.0 33 CGGGTCC 45 3.8380676E-10 45.0 6 CTATGCG 20 7.031122E-4 45.0 1 GGCAGTC 35 1.210883E-7 45.0 27 AACCGGA 25 3.889011E-5 45.0 26 AACCGAT 25 3.889011E-5 45.0 35 ACCGGTC 20 7.031122E-4 45.0 17 CTCGTCC 20 7.031122E-4 45.0 37 ATTAGCG 40 6.8066583E-9 45.0 1 ACTTGGC 40 6.8066583E-9 45.0 28 GCTATCG 35 1.210883E-7 45.0 1 CCGTGTC 20 7.031122E-4 45.0 31 >>END_MODULE