SRR3548184_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548184_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	241619
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGC	6698	2.772132986230387	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCG	5819	2.408337092695525	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTC	5250	2.1728423675290434	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2024	0.8376824670245303	No Hit
GCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC	1857	0.7685653860002732	No Hit
GAACTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCT	1678	0.6944818081359496	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTC	1473	0.6096374871181488	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCT	1163	0.48133631874976723	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGAATCACGT	906	0.3749705114250121	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGAATCACGTCGTA	895	0.3704178893216179	No Hit
CTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGCT	820	0.339377284071203	No Hit
CCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC	485	0.2007292472860164	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGAATCACGTCGT	446	0.18458813255580064	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGAATCACGTCGTAT	284	0.11754042521490446	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTT	278	0.11505717679487126	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGGGTA	35	1.2066084E-7	45.000004	5
CTCCGCC	30	2.158362E-6	45.000004	45
GTTGTAG	35	1.2066084E-7	45.000004	1
CGGGATA	35	1.2066084E-7	45.000004	6
TAGATAA	30	2.158362E-6	45.000004	28
AGTAGAG	35	1.2066084E-7	45.000004	1
TCACGGA	20	7.022218E-4	45.0	18
CGGGTCC	25	3.8816324E-5	45.0	6
GATACAA	20	7.022218E-4	45.0	9
CGAACCG	20	7.022218E-4	45.0	29
CGTATGG	20	7.022218E-4	45.0	45
TGCCAGG	20	7.022218E-4	45.0	2
CACGGAT	20	7.022218E-4	45.0	19
GGCACGG	20	7.022218E-4	45.0	2
GGACTAC	20	7.022218E-4	45.0	8
CCAATTC	20	7.022218E-4	45.0	23
GTAGGGT	45	3.8198777E-10	45.0	4
AGGGTAC	25	3.8816324E-5	45.0	6
CTAAGCG	20	7.022218E-4	45.0	1
TGAGTAG	20	7.022218E-4	45.0	1