##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548184_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 241619 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.779694477669388 28.0 25.0 31.0 16.0 33.0 2 27.499406089752874 30.0 25.0 31.0 16.0 33.0 3 27.399951990530546 30.0 25.0 31.0 16.0 33.0 4 30.264242464375734 33.0 28.0 35.0 19.0 37.0 5 31.87618109502978 33.0 32.0 35.0 26.0 37.0 6 31.14437606314073 35.0 30.0 35.0 17.0 36.0 7 32.041114316341016 35.0 31.0 35.0 26.0 35.0 8 32.88088685078574 35.0 32.0 35.0 28.0 37.0 9 34.17398466180226 35.0 32.0 37.0 27.0 39.0 10 33.95886912866952 35.0 32.0 39.0 27.0 39.0 11 34.24592850727799 37.0 32.0 39.0 27.0 39.0 12 33.7258162644494 35.0 32.0 38.0 25.0 39.0 13 33.85984959792069 35.0 32.0 39.0 25.0 39.0 14 34.64436985501968 37.0 33.0 39.0 25.0 40.0 15 35.350721590603385 37.0 33.0 40.0 27.0 41.0 16 35.35677243925353 37.0 33.0 40.0 27.0 41.0 17 34.78716491666632 36.0 33.0 39.0 27.0 40.0 18 34.647163509492216 36.0 33.0 39.0 27.0 40.0 19 34.013587507604946 36.0 32.0 38.0 26.0 40.0 20 33.78041048096383 35.0 32.0 38.0 27.0 40.0 21 34.31229746005074 35.0 33.0 39.0 27.0 40.0 22 34.61416941548471 36.0 33.0 39.0 27.0 40.0 23 34.929670265997295 36.0 33.0 39.0 28.0 40.0 24 34.63886532102194 36.0 33.0 39.0 27.0 40.0 25 33.810139103298994 35.0 32.0 39.0 24.0 40.0 26 33.772199206188255 35.0 32.0 39.0 24.0 40.0 27 34.26375409218646 35.0 33.0 39.0 25.0 40.0 28 34.080275143924936 35.0 33.0 39.0 24.0 40.0 29 34.05554198966141 36.0 33.0 39.0 24.0 40.0 30 33.476994772762076 35.0 32.0 39.0 22.0 40.0 31 33.336927145630106 35.0 32.0 39.0 21.0 40.0 32 32.82298163637793 35.0 31.0 39.0 18.0 40.0 33 32.44594589001693 35.0 31.0 39.0 15.0 40.0 34 32.10071227842181 35.0 31.0 39.0 12.0 40.0 35 31.943758562033615 36.0 31.0 39.0 10.0 40.0 36 31.509794345643346 35.0 30.0 39.0 9.0 40.0 37 31.43202728262264 35.0 30.0 39.0 9.0 40.0 38 31.29338752333219 35.0 30.0 39.0 8.0 40.0 39 31.03287820908124 35.0 29.0 39.0 8.0 40.0 40 30.898352364673308 35.0 27.0 39.0 8.0 40.0 41 30.44666189331137 35.0 26.0 39.0 8.0 40.0 42 30.673912233723343 35.0 27.0 39.0 8.0 40.0 43 30.491865292050708 35.0 27.0 39.0 8.0 40.0 44 30.412744858641084 35.0 27.0 39.0 7.0 40.0 45 30.543620327871565 35.0 27.0 39.0 8.0 40.0 46 30.233367409019987 35.0 26.0 38.0 7.0 40.0 47 30.214440917311965 35.0 26.0 38.0 8.0 40.0 48 30.152032745769166 35.0 26.0 38.0 7.0 40.0 49 30.222184513635103 35.0 26.0 38.0 7.0 40.0 50 30.03468270293313 35.0 26.0 38.0 7.0 40.0 51 27.85213911157649 32.0 21.0 36.0 7.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 5.0 9 11.0 10 14.0 11 11.0 12 15.0 13 13.0 14 43.0 15 95.0 16 273.0 17 595.0 18 1153.0 19 1814.0 20 2709.0 21 3626.0 22 4492.0 23 5639.0 24 6727.0 25 8060.0 26 8349.0 27 8100.0 28 8091.0 29 8898.0 30 10538.0 31 12970.0 32 16330.0 33 19880.0 34 22952.0 35 23541.0 36 26549.0 37 25137.0 38 13634.0 39 1355.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.253850069737894 19.791903782401217 20.979310401913757 23.974935745947132 2 34.33794527748232 32.40018376038309 22.018135990960978 11.243734971173625 3 21.75532553317413 31.55091280073173 36.49257715659778 10.201184509496356 4 19.916066203402877 22.657986333856194 44.61817986168306 12.807767601057865 5 24.875527172945837 25.81005632835166 35.1421038908364 14.172312607866102 6 15.958595971343314 39.815577417338865 34.706707667857245 9.519118943460573 7 61.87551475670373 5.994147811223455 28.967506694423868 3.1628307376489433 8 58.40103634234063 14.062635802647971 21.790918760527937 5.745409094483463 9 54.56855628075606 7.1546525728523 22.905069551649497 15.371721594742136 10 34.234890468050935 25.041077067614715 27.97793219904064 12.746100265293705 11 28.34338359152219 21.562459905884886 35.7285643927009 14.36559210989202 12 24.303138412128185 18.061493508374753 38.75233321882799 18.88303486066907 13 18.784118798604414 25.78356834520464 43.18907039595396 12.243242460236985 14 15.151540234832526 32.93449604542689 35.103199665589216 16.81076405415137 15 11.07901282597809 22.189066257206594 52.3336327027262 14.398288214089124 16 11.708516300456504 24.094131670108727 40.356511698169435 23.84084033126534 17 12.424105720162736 22.748211026450736 40.1367442129965 24.690939040390035 18 13.786581353287614 23.339638025155306 41.64200663027328 21.2317739912838 19 16.751579966807245 25.00093121815751 37.47304640777423 20.774442407261017 20 18.871032493305577 24.281616925821233 41.20909365571416 15.63825692515903 21 16.75985746154069 29.84202401301222 38.01108356544808 15.387034959999008 22 13.55067275338446 22.81691423273832 38.49655863156457 25.13585438231265 23 14.366419859365365 29.75345481936437 37.60838344666603 18.271741874604235 24 17.534630968591046 22.984119626353888 38.04336579490851 21.437883610146553 25 12.977456243093465 31.15773180089314 36.1469917514765 19.717820204536896 26 14.79519408655776 26.04720655246483 37.646459922439874 21.511139438537533 27 16.197401694403172 30.94417243677029 33.94145327975035 18.916972589076188 28 12.23289559182018 27.40099081611959 42.57860515936247 17.78750843269776 29 18.341686705101836 22.746555527504047 38.11413837487946 20.79761939251466 30 14.868863789685413 30.793522032621606 36.16644386410009 18.17117031359289 31 20.849353734598687 28.98902818073082 30.237274386534175 19.924343698136322 32 22.16920026984633 27.848803281198915 31.821173003778675 18.16082344517608 33 18.306507352484697 27.057060909944997 28.60909117246574 26.027340565104566 34 21.41429275015624 27.83762866330876 31.36301367028255 19.385064916252446 35 17.345076339195177 26.295117519731477 30.181401297083426 26.178404843989917 36 26.439973677566748 26.07079741245515 28.091333876888818 19.397895033089284 37 18.300713106171287 29.416974658449874 34.9426162677604 17.33969596761844 38 19.14998406582264 29.87016749510593 26.43128230809663 24.5485661309748 39 21.919633803632994 26.52150700069117 32.06867009630865 19.490189099367186 40 20.424304380036336 22.657572459119525 30.414412773829874 26.503710387014266 41 20.324146693761666 28.47623738199397 26.551719856468242 24.647896067776127 42 21.84223922787529 22.876098320082445 31.353080676602417 23.928581775439845 43 25.361002239062323 22.79870374432474 29.09415236384556 22.746141652767374 44 20.118450949635584 25.202488214916873 31.396123649216328 23.282937186231216 45 16.572372205828184 24.682247670919917 31.886565212172886 26.858814911079016 46 24.474068678373804 25.123438140212485 30.179331923400067 20.22316125801365 47 16.642730911062458 23.233686092567226 38.33266423584238 21.790918760527937 48 19.395411784669253 24.340801013165354 30.88416059995282 25.379626602212575 49 19.27497423629764 20.15156092856936 37.81366531605544 22.759799519077557 50 20.915159817729567 20.792239020937924 33.768453639821374 24.52414752151114 51 17.71963297588352 22.364549145555607 29.703375976227036 30.212441902333843 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 43.0 1 105.0 2 167.0 3 2734.0 4 5301.0 5 4497.5 6 3694.0 7 3749.5 8 3805.0 9 3966.5 10 4128.0 11 4089.5 12 4051.0 13 4033.0 14 4015.0 15 3914.0 16 3813.0 17 3776.0 18 3739.0 19 3481.5 20 3224.0 21 3107.0 22 2990.0 23 2825.5 24 2661.0 25 2610.5 26 2485.0 27 2410.0 28 2472.0 29 2534.0 30 2946.0 31 3358.0 32 4423.0 33 5488.0 34 4933.0 35 4378.0 36 4620.5 37 4863.0 38 5677.0 39 6491.0 40 7956.5 41 9422.0 42 11465.5 43 13509.0 44 15607.5 45 17706.0 46 30600.5 47 43495.0 48 33357.5 49 23220.0 50 21042.0 51 18864.0 52 15108.5 53 11353.0 54 9837.5 55 8322.0 56 7437.5 57 6553.0 58 5822.0 59 5091.0 60 4290.5 61 3490.0 62 3128.5 63 2767.0 64 2241.0 65 1715.0 66 1299.0 67 883.0 68 707.0 69 531.0 70 477.0 71 423.0 72 321.5 73 220.0 74 197.0 75 126.0 76 78.0 77 67.0 78 56.0 79 40.0 80 24.0 81 15.5 82 7.0 83 4.5 84 2.0 85 1.0 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 241619.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.05247113484016 #Duplication Level Percentage of deduplicated Percentage of total 1 83.58075399112202 35.98357998630958 2 7.037134013440968 6.059320179713384 3 2.130308690314733 2.751451601942226 4 1.0854323213501529 1.8692217473500004 5 0.6586158739324552 1.417752045071228 6 0.507701134445583 1.3114673061506439 7 0.39676624350645323 1.195723707208838 8 0.3328039124812965 1.146242466853031 9 0.3587886009165282 1.3902062296021667 >10 3.818749982077322 30.935638333854403 >50 0.05996466865320246 1.7086069128977082 >100 0.0219870451728409 1.9323479339772367 >500 0.002998233432660123 1.1277408004797012 >1k 0.004997055721100205 3.526072437974495 >5k 0.002998233432660123 7.6446283106153565 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGC 6698 2.772132986230387 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCG 5819 2.408337092695525 No Hit GAATCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTC 5250 2.1728423675290434 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2024 0.8376824670245303 No Hit GCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC 1857 0.7685653860002732 No Hit GAACTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCT 1678 0.6944818081359496 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTC 1473 0.6096374871181488 No Hit GAATGACTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCT 1163 0.48133631874976723 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGAATCACGT 906 0.3749705114250121 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGAATCACGTCGTA 895 0.3704178893216179 No Hit CTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGCT 820 0.339377284071203 No Hit CCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC 485 0.2007292472860164 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGAATCACGTCGT 446 0.18458813255580064 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGAATCACGTCGTAT 284 0.11754042521490446 No Hit GAATGCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTT 278 0.11505717679487126 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.40518336720208264 0.0 2 0.0 0.0 0.0 1.7970441066306873 0.0 3 0.0 0.0 0.0 2.204710722252803 0.0 4 0.0 0.0 0.0 3.4513014291094657 0.0 5 0.0 0.0 0.0 7.029662402377297 0.0 6 0.0 0.0 0.0 7.9194930862225235 0.0 7 0.0 0.0 0.0 9.00301714683034 0.0 8 0.0 0.0 0.0 11.03390047968082 0.0 9 0.0 0.0 0.0 11.61373898575857 0.0 10 0.0 0.0 0.0 15.278185904254219 0.0 11 0.0 0.0 0.0 16.619140051072144 0.0 12 0.0 0.0 0.0 20.987587896647202 0.0 13 0.0 0.0 0.0 21.994131256233988 0.0 14 0.0 0.0 0.0 22.34302765924865 0.0 15 0.0 0.0 0.0 23.11283466945894 0.0 16 0.0 0.0 0.0 24.000182104884136 0.0 17 0.0 0.0 0.0 24.714943775117025 0.0 18 0.0012416242100165963 0.0 0.0 26.23510568291401 0.0 19 0.0012416242100165963 0.0 0.0 27.113761748869088 0.0 20 0.0012416242100165963 0.0 0.0 27.67870076442664 0.0 21 0.0012416242100165963 0.0 0.0 28.03835791059478 0.0 22 0.0012416242100165963 0.0 0.0 28.43029728622335 0.0 23 0.0012416242100165963 0.0 0.0 28.797404177651593 0.0 24 0.0012416242100165963 0.0 0.0 29.073044752275276 0.0 25 0.0012416242100165963 0.0 0.0 29.291156738501524 0.0 26 0.0012416242100165963 0.0 0.0 29.505957726834396 0.0 27 0.0012416242100165963 0.0 0.0 29.774976305671327 0.0 28 0.0012416242100165963 0.0 0.0 29.968255807697243 0.0 29 0.0012416242100165963 0.0 0.0 30.201681159180364 0.0 30 0.0012416242100165963 0.0 0.0 30.467802614860588 0.0 31 0.0012416242100165963 0.0 0.0 30.69791696845033 0.0 32 0.0012416242100165963 0.0 0.0 30.932170069406794 0.0 33 0.0012416242100165963 0.0 0.0 31.14572943352965 0.0 34 0.0024832484200331927 0.0 0.0 31.35721942396914 0.0 35 0.0024832484200331927 0.0 0.0 31.600577769132393 0.0 36 0.0024832484200331927 0.0 0.0 31.814137133255247 0.0 37 0.0024832484200331927 0.0 0.0 32.04963185842173 0.0 38 0.0024832484200331927 0.0 0.0 32.24580848360435 0.0 39 0.0024832484200331927 0.0 0.0 32.475508962457425 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATGGGTA 35 1.2066084E-7 45.000004 5 CTCCGCC 30 2.158362E-6 45.000004 45 GTTGTAG 35 1.2066084E-7 45.000004 1 CGGGATA 35 1.2066084E-7 45.000004 6 TAGATAA 30 2.158362E-6 45.000004 28 AGTAGAG 35 1.2066084E-7 45.000004 1 TCACGGA 20 7.022218E-4 45.0 18 CGGGTCC 25 3.8816324E-5 45.0 6 GATACAA 20 7.022218E-4 45.0 9 CGAACCG 20 7.022218E-4 45.0 29 CGTATGG 20 7.022218E-4 45.0 45 TGCCAGG 20 7.022218E-4 45.0 2 CACGGAT 20 7.022218E-4 45.0 19 GGCACGG 20 7.022218E-4 45.0 2 GGACTAC 20 7.022218E-4 45.0 8 CCAATTC 20 7.022218E-4 45.0 23 GTAGGGT 45 3.8198777E-10 45.0 4 AGGGTAC 25 3.8816324E-5 45.0 6 CTAAGCG 20 7.022218E-4 45.0 1 TGAGTAG 20 7.022218E-4 45.0 1 >>END_MODULE