SRR3548182_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548182_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	280844
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3101	1.104171710985458	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGC	2285	0.813618948597798	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCG	2042	0.7270940450926493	No Hit
GAATCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTC	1704	0.6067425332212901	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	1018	0.3624788138610759	No Hit
GCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC	948	0.33755394453860504	TruSeq Adapter, Index 15 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGCT	747	0.2659839626269388	TruSeq Adapter, Index 21 (95% over 23bp)
GAACTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCT	639	0.22752844995798377	No Hit
CCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC	532	0.18942900685077838	TruSeq Adapter, Index 15 (95% over 21bp)
GAATGATCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTC	449	0.15987523322556293	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCT	377	0.13423822477959294	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTATAGGACTCGTA	296	0.10539659027787669	No Hit
TCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC	295	0.10504052071612711	TruSeq Adapter, Index 15 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTATAGGACT	287	0.10219196422213044	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAC	30	2.1596225E-6	45.000004	6
GGCCGAT	30	2.1596225E-6	45.000004	8
TCGTGTA	125	0.0	45.000004	17
GTGCACG	20	7.0241746E-4	45.0	1
CGAACGA	20	7.0241746E-4	45.0	22
AATCATC	20	7.0241746E-4	45.0	41
GATAACG	25	3.8832528E-5	45.0	17
GATCGCA	25	3.8832528E-5	45.0	9
CACGGGC	50	2.1827873E-11	45.0	4
CCGATGT	25	3.8832528E-5	45.0	11
CCCTACA	25	3.8832528E-5	45.0	27
TTGCTAG	20	7.0241746E-4	45.0	1
GGCAATT	25	3.8832528E-5	45.0	8
TTGTACG	25	3.8832528E-5	45.0	1
ACTTATA	20	7.0241746E-4	45.0	44
TACGGGT	35	1.2075543E-7	45.0	4
ACGGGTA	20	7.0241746E-4	45.0	5
ACGGGCT	55	1.8189894E-12	45.0	5
ATTCCGA	20	7.0241746E-4	45.0	12
GCCGATC	20	7.0241746E-4	45.0	9