SRR3548178_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548178_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	778112
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4229	0.5434950238526073	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	3929	0.5049401628557328	No Hit
TTTTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1467	0.18853327027471622	No Hit
TTTTGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1021	0.13121504359269617	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGC	922	0.1184919394637276	No Hit
TTTTTTGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAGAGCTA	847	0.10885322421450896	No Hit
TTTTCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	822	0.10564031913143608	No Hit
CTTTTTGGGGGGAATTCATCTCCTCTAACTTTGGAGAGGTAGGAATGGGAG	807	0.10371257608159236	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGATC	20	7.031879E-4	45.000004	22
CGGAATT	20	7.031879E-4	45.000004	28
AGCGTCC	20	7.031879E-4	45.000004	16
AGGTAAT	20	7.031879E-4	45.000004	32
AGCCGCG	20	7.031879E-4	45.000004	28
TCGTTAA	55	1.8189894E-12	45.000004	19
ACGCCCG	20	7.031879E-4	45.000004	40
ATCTAAC	20	7.031879E-4	45.000004	35
TACCAGT	20	7.031879E-4	45.000004	35
ACGTTGT	20	7.031879E-4	45.000004	15
ACGTTCG	40	6.8102963E-9	45.000004	39
TAGGTTA	20	7.031879E-4	45.000004	43
TAGGTCC	20	7.031879E-4	45.000004	20
CGGTTAT	20	7.031879E-4	45.000004	32
GGCGTAG	20	7.031879E-4	45.000004	13
GGCCGGA	40	6.8102963E-9	45.000004	8
TCTTACC	20	7.031879E-4	45.000004	41
ATAGCGC	20	7.031879E-4	45.000004	44
GAATCGA	20	7.031879E-4	45.000004	44
GAATAGA	40	6.8102963E-9	45.000004	43