SRR3548176_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548176_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	682638
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4527	0.6631626132737996	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGC	2520	0.36915612667328807	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCG	1831	0.2682241539439645	No Hit
GAATCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTC	1753	0.25679789288026744	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1463	0.2143156402075478	No Hit
TTTTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1022	0.14971331803972238	No Hit
TGTTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	880	0.1289116632827355	No Hit
TTGTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	845	0.12378449485671761	No Hit
TTTTCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	758	0.11103981905490172	No Hit
TTTCCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	728	0.1066451032611721	No Hit
TTTTTTGGGGGGAATTCATCTCCTCTAACTTTGGAGAGGTAGGAATGGGAG	694	0.10166442536161187	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTGTCC	35	1.2109558E-7	45.000004	35
GTTGAAT	25	3.889134E-5	45.000004	25
TGTCACG	35	1.2109558E-7	45.000004	28
AACCGTC	25	3.889134E-5	45.000004	11
AACGTAG	25	3.889134E-5	45.000004	20
CTATGCG	25	3.889134E-5	45.000004	23
GATACGA	50	2.1827873E-11	45.000004	19
CTCACAT	25	3.889134E-5	45.000004	38
GTACATT	35	1.2109558E-7	45.000004	33
AGTCATC	45	3.8380676E-10	45.000004	12
ATTAGGT	25	3.889134E-5	45.000004	20
AGTCAAT	25	3.889134E-5	45.000004	20
CACGGGT	35	1.2109558E-7	45.000004	23
CAACGAG	25	3.889134E-5	45.000004	35
TAGACCG	25	3.889134E-5	45.000004	25
TCCGAAC	35	1.2109558E-7	45.000004	43
CGCATAC	45	3.8380676E-10	45.000004	37
TAGAACG	25	3.889134E-5	45.000004	17
TAGCGGA	25	3.889134E-5	45.000004	29
TTCACTC	25	3.889134E-5	45.000004	12