SRR3548175_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548175_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	426724
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGC	6290	1.4740206784713303	No Hit
GAATCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTC	4439	1.0402508412932012	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCG	4140	0.9701821317760426	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3927	0.9202669641266955	No Hit
GAACTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCT	1545	0.3620607230903347	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCATCCCACTTCGTA	1200	0.2812122121089978	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTC	1118	0.26199604428154966	No Hit
GCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCTGC	1050	0.2460606855953731	No Hit
GATTGATACGGCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGC	973	0.22801623531837908	No Hit
GAATGACTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCT	954	0.22356370862665328	No Hit
GATTCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTC	801	0.18770915158275606	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCATCCCACTT	709	0.16614954865439957	No Hit
GATTGATACCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCG	684	0.1602909609021288	No Hit
GAATGCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTT	565	0.13240408320131983	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	525	0.12303034279768656	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	493	0.11553135047477996	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCATCCCACTTCGT	441	0.1033454879500567	No Hit
CTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCTGCT	427	0.10006467880878506	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGATG	20	7.028294E-4	45.000004	27
ACAACCA	35	1.2095188E-7	45.000004	39
AGCGTTG	20	7.028294E-4	45.000004	22
AACGTAT	20	7.028294E-4	45.000004	31
AACCGTC	20	7.028294E-4	45.000004	25
TCGCATA	20	7.028294E-4	45.000004	31
ACAGTCG	20	7.028294E-4	45.000004	31
AGATCGA	20	7.028294E-4	45.000004	28
GTTCTCG	20	7.028294E-4	45.000004	1
GTCGATC	20	7.028294E-4	45.000004	34
GATCGAC	20	7.028294E-4	45.000004	29
CTCCGCG	20	7.028294E-4	45.000004	1
CCTAGCT	20	7.028294E-4	45.000004	35
CTATATC	20	7.028294E-4	45.000004	16
ATTACGA	20	7.028294E-4	45.000004	19
AAGACTC	20	7.028294E-4	45.000004	10
GAATCGC	20	7.028294E-4	45.000004	27
AGGACCG	20	7.028294E-4	45.000004	12
TCGGGAC	40	6.7975634E-9	45.000004	5
ATTCGTT	20	7.028294E-4	45.000004	12