SRR3548172_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548172_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	748761
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGC	6017	0.8035942042921573	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5932	0.7922421173111313	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCG	4476	0.5977875450243803	No Hit
GAATCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTC	3590	0.4794587324927446	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1131	0.15104953382988698	No Hit
GAACTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCT	977	0.13048222329955753	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTC	894	0.11939724424749687	No Hit
TTTTTTGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGC	867	0.11579128720646509	No Hit
TTTGTTGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGC	862	0.1151235173840518	No Hit
GCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCTGC	845	0.11285309998784658	No Hit
GATTGATACGGCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGC	828	0.11058268259164139	No Hit
GAATGACTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCT	797	0.10644250969267896	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCTACG	35	1.2111741E-7	45.000004	1
ATCTCGA	35	1.2111741E-7	45.000004	29
CGTATTA	35	1.2111741E-7	45.000004	45
CGACGTA	35	1.2111741E-7	45.000004	27
ACGTTGA	35	1.2111741E-7	45.000004	17
TAGCGAT	35	1.2111741E-7	45.000004	30
ATAGCGA	35	1.2111741E-7	45.000004	29
ATCCGTG	35	1.2111741E-7	45.000004	22
CCCGTTG	35	1.2111741E-7	45.000004	1
CGTAGAC	35	1.2111741E-7	45.000004	43
CTACGAA	75	0.0	45.000004	11
CTGTTAC	35	1.2111741E-7	45.000004	40
GTCCGAT	35	1.2111741E-7	45.000004	20
ACTCGTA	35	1.2111741E-7	45.000004	40
GCCTAAC	35	1.2111741E-7	45.000004	36
CTATTGA	35	1.2111741E-7	45.000004	39
ACGTAGA	35	1.2111741E-7	45.000004	29
GCTACGA	75	0.0	45.000004	10
AGCTACG	75	0.0	45.000004	9
TGACTAG	35	1.2111741E-7	45.000004	33