SRR3548170_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548170_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	673759
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGC	11581	1.7188638667535425	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCG	9277	1.376901829882792	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTC	8676	1.2877007950914199	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4508	0.6690819714467636	No Hit
GAACTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTCT	2499	0.3709041363454885	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTC	1812	0.2689388935806423	No Hit
GATTGATACGGCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGC	1625	0.24118416228948333	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCT	1603	0.2379188997846411	No Hit
GCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTCTGC	1547	0.22960732249958812	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTGCTCATTCGTA	1488	0.22085048214569303	No Hit
GATTCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTC	1456	0.21610100941137708	No Hit
TTTTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1454	0.21580416736548233	No Hit
GATTGATACCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCG	1337	0.19843890768063951	No Hit
TTTTTTGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGC	1299	0.19279890880863929	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTGCTCATT	1194	0.17721470139916498	No Hit
CTTTTTGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGC	776	0.11517471380716249	No Hit
TTGTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	701	0.10404313708610943	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	681	0.10107471662716193	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAGAC	40	6.8084773E-9	45.000004	21
TATCATG	20	7.031205E-4	45.000004	15
TTTAGAT	20	7.031205E-4	45.000004	27
CTATGTC	40	6.8084773E-9	45.000004	42
CTAGAGT	40	6.8084773E-9	45.000004	30
CTAGACG	30	2.164159E-6	45.000004	37
CGGGTAG	60	0.0	45.000004	6
AACCGCG	20	7.031205E-4	45.000004	40
CTGTCGA	30	2.164159E-6	45.000004	38
AATCCAC	20	7.031205E-4	45.000004	36
GTACCGC	20	7.031205E-4	45.000004	43
ACACGTG	40	6.8084773E-9	45.000004	42
CGAACTG	20	7.031205E-4	45.000004	38
CGAACTC	40	6.8084773E-9	45.000004	12
ACACGTA	30	2.164159E-6	45.000004	30
CAAACCG	30	2.164159E-6	45.000004	18
CGAACGA	20	7.031205E-4	45.000004	21
ACACGAT	20	7.031205E-4	45.000004	19
TCCGCAG	20	7.031205E-4	45.000004	29
GTATTAC	30	2.164159E-6	45.000004	38