SRR3548167_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548167_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	247775
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGC	1282	0.5174049036424175	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1124	0.45363737261628495	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCG	957	0.38623751387347394	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTC	663	0.26758147512864494	No Hit
TTTTTTGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGC	261	0.10533750378367471	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	257	0.1037231359095954	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTCC	20	7.022563E-4	45.000004	6
TCCATTG	20	7.022563E-4	45.000004	10
TCGTTCC	20	7.022563E-4	45.000004	20
ATGATCC	20	7.022563E-4	45.000004	43
CTCGTCG	20	7.022563E-4	45.000004	1
CTCGTCA	20	7.022563E-4	45.000004	20
CGTATAG	20	7.022563E-4	45.000004	36
CGAAAGA	20	7.022563E-4	45.000004	44
GGCACCG	75	0.0	45.000004	8
TATGGGT	20	7.022563E-4	45.000004	4
ATAGCTA	20	7.022563E-4	45.000004	19
GCACGAT	20	7.022563E-4	45.000004	45
ATACTCG	20	7.022563E-4	45.000004	44
CGTTAGC	20	7.022563E-4	45.000004	26
GTTCGCG	20	7.022563E-4	45.000004	1
TCGTCAA	20	7.022563E-4	45.000004	21
TACCTAC	20	7.022563E-4	45.000004	11
GCGATGC	20	7.022563E-4	45.000004	9
CCCCATG	20	7.022563E-4	45.000004	38
GTGAGTC	20	7.022563E-4	45.000004	45