##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548167_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 247775 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.679164564625165 30.0 25.0 31.0 16.0 33.0 2 28.534949046513976 31.0 28.0 33.0 16.0 34.0 3 26.643551609322973 31.0 23.0 33.0 10.0 34.0 4 30.48082332761578 33.0 28.0 35.0 19.0 37.0 5 32.459210977701545 35.0 32.0 35.0 28.0 37.0 6 33.655453536474624 35.0 33.0 37.0 28.0 37.0 7 33.28090404600948 35.0 32.0 35.0 28.0 37.0 8 33.51452325698719 35.0 33.0 37.0 28.0 37.0 9 35.198123297346385 37.0 35.0 39.0 29.0 39.0 10 35.568870951468064 37.0 35.0 39.0 30.0 39.0 11 35.64860861668853 37.0 35.0 39.0 30.0 39.0 12 34.70295631116941 37.0 33.0 39.0 27.0 39.0 13 34.62828372515387 37.0 33.0 39.0 27.0 39.0 14 35.475055998385635 38.0 33.0 40.0 27.0 41.0 15 36.18847341337907 38.0 34.0 40.0 30.0 41.0 16 35.895546362627385 38.0 34.0 40.0 30.0 41.0 17 35.81462213701948 37.0 34.0 40.0 30.0 41.0 18 35.54691958430027 37.0 34.0 39.0 29.0 41.0 19 35.00067803450711 37.0 34.0 39.0 27.0 40.0 20 35.29465846029664 36.0 34.0 39.0 29.0 40.0 21 35.401969528806376 37.0 34.0 39.0 30.0 40.0 22 35.64399959640803 37.0 34.0 40.0 30.0 41.0 23 35.83283220663909 37.0 34.0 40.0 30.0 41.0 24 35.717800423771564 37.0 34.0 40.0 30.0 41.0 25 34.99273938048633 36.0 34.0 40.0 27.0 41.0 26 34.990378367470484 36.0 34.0 40.0 27.0 41.0 27 35.30905054989406 36.0 34.0 40.0 29.0 41.0 28 35.268186863081425 37.0 34.0 40.0 29.0 41.0 29 35.288209060639694 37.0 34.0 40.0 29.0 41.0 30 34.907371607305016 36.0 34.0 40.0 27.0 41.0 31 34.78249218040561 36.0 34.0 40.0 26.0 41.0 32 34.446933710019174 36.0 33.0 40.0 24.0 41.0 33 34.35650085763293 37.0 33.0 40.0 23.0 41.0 34 34.14791645646252 37.0 34.0 40.0 22.0 41.0 35 33.9828231258198 37.0 33.0 40.0 20.0 41.0 36 33.71656139642821 37.0 33.0 40.0 18.0 41.0 37 33.609996973060234 37.0 33.0 40.0 18.0 41.0 38 33.53079204923822 36.0 33.0 40.0 18.0 41.0 39 33.39342548683281 36.0 33.0 40.0 18.0 41.0 40 33.32008475431339 36.0 33.0 40.0 18.0 41.0 41 33.167405912622336 36.0 32.0 40.0 17.0 41.0 42 33.16263141963475 36.0 33.0 40.0 17.0 41.0 43 33.15020078700434 36.0 33.0 40.0 17.0 41.0 44 32.99092725254767 36.0 32.0 40.0 15.0 41.0 45 32.975566542225806 35.0 32.0 40.0 17.0 41.0 46 32.82915144788619 35.0 32.0 39.0 16.0 41.0 47 32.91765916658259 35.0 32.0 40.0 17.0 41.0 48 32.80711129048532 35.0 32.0 39.0 16.0 41.0 49 32.7745050953486 35.0 32.0 39.0 15.0 40.0 50 32.64899202905862 35.0 32.0 39.0 15.0 40.0 51 31.087284835031785 34.0 29.0 38.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 27.0 9 37.0 10 46.0 11 30.0 12 34.0 13 33.0 14 49.0 15 63.0 16 128.0 17 251.0 18 436.0 19 770.0 20 1224.0 21 1749.0 22 2343.0 23 3222.0 24 4331.0 25 5655.0 26 6490.0 27 6652.0 28 6696.0 29 7227.0 30 8471.0 31 10723.0 32 14186.0 33 19179.0 34 25824.0 35 24155.0 36 24130.0 37 29273.0 38 31141.0 39 13200.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.544445565533245 4.1331853496115425 48.355968116234486 26.966400968620725 2 25.069518716577537 5.824235697709615 51.80910099889012 17.29714458682272 3 20.46574513167188 5.46544243769549 53.83916860054485 20.22964383008778 4 16.673594995459588 4.727676319241247 56.32690949450105 22.271819190798105 5 17.245888406820704 5.6091211784885475 54.38240339017254 22.762587024518215 6 19.87892240944405 8.311572999697306 57.253960246191106 14.55554434466754 7 78.60478256482696 1.649076783372011 16.90243164161033 2.843709010190697 8 81.11229946524064 3.443850267379679 13.270911108868933 2.172939158510746 9 77.14095449500556 4.406013520330945 13.864594894561598 4.588437090101907 10 42.37433155080214 29.220058520835433 18.969629704368884 9.435980223993543 11 35.629502572898794 21.339521743517302 29.857733831096763 13.173241852487136 12 33.37342346887297 19.817172838260518 31.749369387549187 15.060034305317323 13 22.46352537584502 29.136111391383313 33.038038543033 15.362324689738674 14 15.698920391484208 32.32408435072142 34.11805065079205 17.858944607002318 15 13.825850065583694 22.992230854605992 47.736050852588036 15.44586822722228 16 16.58682272222783 20.06578549086873 45.89244274038947 17.454949046513974 17 17.634951064473817 19.145999394612048 36.07305014630209 27.145999394612048 18 19.4890525678539 21.385531227928563 39.07093128846736 20.054484915750177 19 23.678740793058218 22.79366360609424 34.095449500554935 19.432146100292606 20 25.968721622439713 21.985268893149026 33.991726364645345 18.054283119765916 21 22.079305821814145 24.104126727878114 36.20906063969327 17.607506810614467 22 22.46231459993946 21.69306830794067 34.386035717889214 21.458581374230654 23 19.997578448188882 26.509534860256277 32.53597013419433 20.956916557360508 24 19.698920391484208 21.913025930783977 39.5786499848653 18.80940369286651 25 17.598224195338513 23.60528705478761 38.55756230451014 20.238926445363738 26 17.495711835334475 28.947230350116033 33.58450206840884 19.972555746140653 27 17.8585410150338 29.37584502068409 34.22177378670164 18.543840177580467 28 15.782060336999294 27.15487841791948 39.61214811825245 17.450913126828777 29 16.92261124003632 24.123095550398546 39.17384724043991 19.780445969125214 30 18.832812027040664 25.687821612349914 35.27232368075875 20.20704267985067 31 22.72505297144587 26.388457269700332 31.088285743113715 19.798204015740087 32 24.58480476238523 27.123398244374936 31.32357986076077 16.96821713247906 33 24.16305115528201 25.64181212793865 29.95298153566744 20.242155181111894 34 20.46534153970336 27.149631722328728 32.753909797195035 19.631116940772877 35 21.51024114620119 25.24911714256886 31.18635859146403 22.054283119765916 36 24.351125012612247 25.05539299767935 29.129250327918477 21.46423166178993 37 21.913429522752498 29.04167087074967 30.807789324992434 18.237110281505398 38 21.286651195641205 28.488749873877513 27.94995459590354 22.274644334577744 39 20.920593280193724 28.86812632428615 28.89072747452326 21.32055292099687 40 21.706386842901825 25.611542730299668 29.890424780546866 22.79164564625164 41 18.596710725456564 26.13500151346988 29.62526485722934 25.643022903844216 42 20.575522147109275 28.730501463020886 28.988396730905052 21.705579658964787 43 22.945010594289172 27.014832004843104 28.135203309454145 21.904954091413583 44 20.453637372616285 28.999293714055092 29.104227625870244 21.442841287458382 45 19.704167087074968 30.59832509333064 26.375542326707695 23.321965492886694 46 21.15871254162042 31.18474422358995 28.430632630410656 19.225910604378974 47 20.44395116537181 27.245283018867923 31.58187872061346 20.728887095146806 48 22.422358995055998 25.267278781152253 29.63414388053678 22.67621834325497 49 20.7002320653819 26.082130965593787 31.875290081727375 21.34234688729694 50 20.984360811219858 29.040863686812635 28.927050751690043 21.047724750277467 51 20.102915951972555 29.174856220361217 27.339319947533042 23.382907880133185 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 7.0 1 74.5 2 142.0 3 1816.5 4 3491.0 5 3226.0 6 2961.0 7 2959.5 8 2958.0 9 2949.5 10 2941.0 11 2885.0 12 2829.0 13 2637.5 14 2446.0 15 2334.5 16 2223.0 17 2042.5 18 1862.0 19 1794.0 20 1726.0 21 1698.5 22 1671.0 23 1761.0 24 1851.0 25 2075.5 26 2517.5 27 2735.0 28 3099.0 29 3463.0 30 4003.5 31 4544.0 32 5368.5 33 6193.0 34 6700.5 35 7208.0 36 7572.0 37 7936.0 38 9058.5 39 10181.0 40 11946.5 41 13712.0 42 16211.0 43 18710.0 44 19105.0 45 19500.0 46 21559.0 47 23618.0 48 20627.0 49 17636.0 50 16883.5 51 16131.0 52 14805.5 53 13480.0 54 12332.5 55 11185.0 56 10273.5 57 9362.0 58 9150.0 59 8938.0 60 8393.5 61 7849.0 62 7248.5 63 6648.0 64 5172.0 65 3696.0 66 2954.5 67 2213.0 68 1836.0 69 1459.0 70 1118.5 71 778.0 72 654.5 73 531.0 74 422.5 75 233.5 76 153.0 77 104.5 78 56.0 79 71.5 80 87.0 81 57.5 82 28.0 83 19.0 84 10.0 85 9.5 86 9.0 87 5.0 88 1.0 89 1.0 90 1.0 91 1.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 247775.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.018767026536175 #Duplication Level Percentage of deduplicated Percentage of total 1 81.62178194329101 27.76672384219554 2 7.0174397911970585 4.774492987589547 3 2.515126349507652 2.5668449197860963 4 1.2824771621781945 1.7451316718797298 5 0.7177601138925139 1.2208657047724751 6 0.4638747182346661 0.9468267581475129 7 0.35472772570886224 0.8447179901119968 8 0.29778146873887773 0.8104126727878115 9 0.24913987424368253 0.762788820502472 >10 4.871277731640764 42.77267682373121 >50 0.5504804840431843 11.525375845020685 >100 0.05338711590936054 2.6382806982141056 >500 0.002372760707082691 0.6538189890021189 >1k 0.002372760707082691 0.9710422762587024 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGC 1282 0.5174049036424175 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1124 0.45363737261628495 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCG 957 0.38623751387347394 No Hit GAATCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTC 663 0.26758147512864494 No Hit TTTTTTGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGC 261 0.10533750378367471 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 257 0.1037231359095954 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.08515790535768339 0.0 2 0.0 0.0 0.0 0.3612148118252447 0.0 3 0.0 0.0 0.0 0.4411260215921703 0.0 4 0.0 0.0 0.0 0.6635051962465947 0.0 5 0.0 0.0 0.0 1.205125618000202 0.0 6 0.0 0.0 0.0 1.2781757643022904 0.0 7 0.0 0.0 0.0 1.4480879830491373 0.0 8 0.0 0.0 0.0 1.6809605488850772 0.0 9 0.0 0.0 0.0 1.7600645747149632 0.0 10 0.0 0.0 0.0 2.376753102613258 0.0 11 0.0 0.0 0.0 2.5636161840379375 0.0 12 0.0 0.0 0.0 3.437796387851882 0.0 13 0.0 0.0 0.0 3.5806679447079004 0.0 14 0.0 0.0 0.0 3.6521037231359097 0.0 15 0.0 0.0 0.0 3.7873070325900513 0.0 16 0.0 0.0 0.0 3.944304308344264 0.0 17 0.0 0.0 0.0 4.16224397134497 0.0 18 0.0 0.0 0.0 4.477045706790435 0.0 19 0.0 0.0 0.0 4.671173443648471 0.0 20 0.0 0.0 0.0 4.828170719402684 0.0 21 0.0 0.0 0.0 4.933911815154878 0.0 22 0.0 0.0 0.0 5.014226616890324 0.0 23 0.0 0.0 0.0 5.079204923822016 0.0 24 0.0 0.0 0.0 5.1340934315407125 0.0 25 0.0 0.0 0.0 5.169205932801937 0.0 26 0.0 0.0 0.0 5.216829785087277 0.0 27 0.0 0.0 0.0 5.275754212491171 0.0 28 0.0 0.0 0.0 5.322570880839471 0.0 29 0.0 0.0 0.0 5.3584905660377355 0.0 30 0.0 0.0 0.0 5.421854505095348 0.0 31 0.0 0.0 0.0 5.486832812027041 0.0 32 0.0 0.0 0.0 5.539299767934618 0.0 33 0.0 0.0 0.0 5.5877308041569975 0.0 34 0.0 0.0 0.0 5.638179800221976 0.0 35 0.0 0.0 0.0 5.6922611240036325 0.0 36 0.0 0.0 0.0 5.753607103218646 0.0 37 0.0 0.0 0.0 5.808495610937342 0.0 38 0.0 0.0 0.0 5.856523055191202 0.0 39 0.0 0.0 0.0 5.909797195035819 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGGTCC 20 7.022563E-4 45.000004 6 TCCATTG 20 7.022563E-4 45.000004 10 TCGTTCC 20 7.022563E-4 45.000004 20 ATGATCC 20 7.022563E-4 45.000004 43 CTCGTCG 20 7.022563E-4 45.000004 1 CTCGTCA 20 7.022563E-4 45.000004 20 CGTATAG 20 7.022563E-4 45.000004 36 CGAAAGA 20 7.022563E-4 45.000004 44 GGCACCG 75 0.0 45.000004 8 TATGGGT 20 7.022563E-4 45.000004 4 ATAGCTA 20 7.022563E-4 45.000004 19 GCACGAT 20 7.022563E-4 45.000004 45 ATACTCG 20 7.022563E-4 45.000004 44 CGTTAGC 20 7.022563E-4 45.000004 26 GTTCGCG 20 7.022563E-4 45.000004 1 TCGTCAA 20 7.022563E-4 45.000004 21 TACCTAC 20 7.022563E-4 45.000004 11 GCGATGC 20 7.022563E-4 45.000004 9 CCCCATG 20 7.022563E-4 45.000004 38 GTGAGTC 20 7.022563E-4 45.000004 45 >>END_MODULE