SRR3548165_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548165_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	963290
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6183	0.6418627827549336	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGC	4287	0.44503732001785545	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCG	3191	0.3312605757352407	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCGTCTTC	2433	0.25257191499963666	No Hit
TTTTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1431	0.14855339513542132	No Hit
GTTTTTGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGC	1064	0.11045479554443625	No Hit
TTGTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1013	0.10516043974296421	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGGT	50	2.1827873E-11	45.0	29
TCTGCGA	25	3.8903334E-5	45.0	26
TATCATC	25	3.8903334E-5	45.0	11
TGTCACG	20	7.032718E-4	45.0	32
AGCGTCC	25	3.8903334E-5	45.0	37
AGCCGAG	25	3.8903334E-5	45.0	13
GTACCGT	20	7.032718E-4	45.0	38
GTACCCG	20	7.032718E-4	45.0	24
CGAACTA	25	3.8903334E-5	45.0	28
ACACGGT	20	7.032718E-4	45.0	40
CGTATAA	20	7.032718E-4	45.0	28
CACGGTG	20	7.032718E-4	45.0	4
CACGGAC	20	7.032718E-4	45.0	30
ACGTTGA	20	7.032718E-4	45.0	25
CGACGAT	25	3.8903334E-5	45.0	20
TCCGATC	35	1.211647E-7	45.0	18
CGTGATT	25	3.8903334E-5	45.0	36
CATGACG	20	7.032718E-4	45.0	14
CGGTTGA	20	7.032718E-4	45.0	34
CTATACG	20	7.032718E-4	45.0	10