SRR3548162_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548162_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1058792
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4277	0.4039509176495478	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGC	2384	0.2251622603873093	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCG	1641	0.1549879485300229	No Hit
GTTTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1376	0.129959425458447	No Hit
TTTTCTGGGTGTGATGGCATTTAAAACCCGCATGTTCTTTTTAAACTGAAT	1187	0.1121088939092853	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTC	1151	0.10870879266182594	No Hit
TTTTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1113	0.10511979690061883	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGGT	85	0.0	45.000004	36
CTTAACG	20	7.0330343E-4	45.0	34
TGTCACG	25	3.890596E-5	45.0	1
AACCGGT	20	7.0330343E-4	45.0	13
AGCCGGT	20	7.0330343E-4	45.0	28
GTCGCGA	20	7.0330343E-4	45.0	14
GGTACGA	20	7.0330343E-4	45.0	23
GTACCGC	35	1.2118107E-7	45.0	25
GTACCGA	40	6.8139343E-9	45.0	9
ACCGGAG	25	3.890596E-5	45.0	17
CGAACAT	20	7.0330343E-4	45.0	11
AATTTCG	40	6.8139343E-9	45.0	33
ACGCCAA	40	6.8139343E-9	45.0	43
TCCGCAA	20	7.0330343E-4	45.0	12
GTATTAC	20	7.0330343E-4	45.0	19
CACGGTA	40	6.8139343E-9	45.0	42
CAAGTCG	20	7.0330343E-4	45.0	34
GTCGAAA	25	3.890596E-5	45.0	15
CGAAATA	20	7.0330343E-4	45.0	22
GGTCGGA	35	1.2118107E-7	45.0	26