SRR3548158_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548158_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	322063
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1335	0.4145151724973064	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGC	825	0.2561610616556388	No Hit
TTTTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	658	0.20430785281140645	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	550	0.1707740411037592	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTC	497	0.15431763350648786	No Hit
TTCTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	443	0.13755072765266424	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCG	435	0.1350667416002459	No Hit
TTTTCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	386	0.11985232702918372	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACCTA	25	3.8845315E-5	45.000004	25
CGAACAA	25	3.8845315E-5	45.000004	36
CGTATTA	25	3.8845315E-5	45.000004	34
TTAGCGA	25	3.8845315E-5	45.000004	22
GGTCATA	25	3.8845315E-5	45.000004	8
GTGATAA	25	3.8845315E-5	45.000004	28
ATAGACG	25	3.8845315E-5	45.000004	14
CGTTCGG	25	3.8845315E-5	45.000004	2
TATTGCG	25	3.8845315E-5	45.000004	1
CCGTATT	25	3.8845315E-5	45.000004	33
CCCGTAT	25	3.8845315E-5	45.000004	32
CCCCGTA	25	3.8845315E-5	45.000004	31
TAACCGT	25	3.8845315E-5	45.000004	39
CTACGAA	35	1.2082819E-7	45.000004	11
TACGAAT	35	1.2082819E-7	45.000004	12
CGAATAC	25	3.8845315E-5	45.000004	14
TAGGGCG	35	1.2082819E-7	45.000004	5
CCGACCT	25	3.8845315E-5	45.000004	21
ATGCGAA	25	3.8845315E-5	45.000004	33
CGCGTCG	25	3.8845315E-5	45.000004	15