SRR3548157_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548157_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	929931
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAAGGTCCTCGTATGC	8607	0.9255525409949771	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAAGGTCCTCGTATGCCG	6654	0.7155369591937466	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAAGGTCCTCGTATGCCGTCTTC	5070	0.5452017407743155	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4920	0.5290715117573239	No Hit
GAACTGTCTCTTATACACATCTGACGCAAAGGTCCTCGTATGCCGTCTTCT	1445	0.15538787286368558	No Hit
TTTTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1357	0.1459248051737172	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1326	0.1425912245102056	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAAAGGTCCTCGTATGCCGTC	1320	0.14194601534952592	No Hit
TTTTTTGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGC	1238	0.1331281568202372	No Hit
GATTGATACGGCTGTCTCTTATACACATCTGACGCAAAGGTCCTCGTATGC	1179	0.12678360007355385	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAAAGGTCCTCGTATGCCGTCT	1110	0.11936369472573773	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAAAGGTCCTCGTA	1101	0.11839588098471823	No Hit
GCTGTCTCTTATACACATCTGACGCAAAGGTCCTCGTATGCCGTCTTCTGC	1074	0.11549243976165972	TruSeq Adapter, Index 20 (95% over 21bp)
GATTGATACCTGTCTCTTATACACATCTGACGCAAAGGTCCTCGTATGCCG	1011	0.10871774357452328	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAAAGGTCCT	940	0.10108276850648058	No Hit
GATTCTGTCTCTTATACACATCTGACGCAAAGGTCCTCGTATGCCGTCTTC	939	0.10097523364636732	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAGTTA	75	0.0	45.000004	37
CGGAACA	20	7.0325914E-4	45.0	29
AATCCCG	20	7.0325914E-4	45.0	27
TCGTTCC	20	7.0325914E-4	45.0	30
TCGTTAC	20	7.0325914E-4	45.0	43
ACACGTA	20	7.0325914E-4	45.0	8
TCACCGT	20	7.0325914E-4	45.0	24
CTCAATC	25	3.8902286E-5	45.0	27
CGTATCA	20	7.0325914E-4	45.0	38
TACTTGC	50	2.1827873E-11	45.0	14
TACCATA	20	7.0325914E-4	45.0	31
CACGGTA	25	3.8902286E-5	45.0	34
GTCGAAG	35	1.2115925E-7	45.0	16
CAAGTCG	40	6.8121153E-9	45.0	15
TACCACC	35	1.2115925E-7	45.0	42
TTTACGT	25	3.8902286E-5	45.0	25
CACGGCA	20	7.0325914E-4	45.0	38
ACGTTGC	35	1.2115925E-7	45.0	12
TCACATG	45	3.8380676E-10	45.0	36
CCGATAG	25	3.8902286E-5	45.0	14