SRR3548156_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548156_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	225150
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGC	1180	0.5240950477459472	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTC	872	0.387297357317344	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCG	728	0.32333999555851656	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	725	0.3220075505218743	No Hit
TTTTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	527	0.23406617810348657	No Hit
TTTTTTGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGC	345	0.15323117921385743	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	345	0.15323117921385743	No Hit
TTTTTTGGGGGGAATTCATCTCCTCTAACTTTGGAGAGGTAGGAATGGGAG	303	0.1345769487008661	No Hit
TTCTTTGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGC	298	0.13235620697312903	No Hit
GTTTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	287	0.12747057517210747	No Hit
TTGCTTGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGC	267	0.11858760826115923	No Hit
TTTCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	232	0.10304241616699977	No Hit
TTGCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	232	0.10304241616699977	No Hit
TTGTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	231	0.10259826782145237	No Hit
TTTTTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	230	0.10215411947590496	No Hit
TTCTTTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTA	230	0.10215411947590496	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGTTTCG	40	6.7739165E-9	45.000004	1
CGGGTGC	20	7.021192E-4	45.000004	6
CGGGTAC	20	7.021192E-4	45.000004	6
AGCCGTG	20	7.021192E-4	45.000004	44
TAGAGGT	20	7.021192E-4	45.000004	39
CAGCGGT	20	7.021192E-4	45.000004	27
ACTATAT	20	7.021192E-4	45.000004	18
CTGTCCA	20	7.021192E-4	45.000004	26
GCCCAAT	20	7.021192E-4	45.000004	18
ATAGGTG	20	7.021192E-4	45.000004	45
GTTTCGG	40	6.7739165E-9	45.000004	2
CGTGCAC	20	7.021192E-4	45.000004	18
TAGACCA	20	7.021192E-4	45.000004	30
ACGCACA	20	7.021192E-4	45.000004	16
TCCTGGT	20	7.021192E-4	45.000004	36
GGTCCAC	20	7.021192E-4	45.000004	8
ATGCTAG	20	7.021192E-4	45.000004	41
TTCGTCC	20	7.021192E-4	45.000004	10
CTCCACA	20	7.021192E-4	45.000004	18
GTCTAAT	20	7.021192E-4	45.000004	18