SRR3548155_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548155_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	744369
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGC	6254	0.8401746983015145	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4465	0.5998369088449412	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCG	4410	0.5924481003373328	No Hit
GAATCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTC	3246	0.4360740439217646	No Hit
TTTTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1359	0.1825707411243617	No Hit
TTTTTTGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAGAGCTA	1355	0.18203337323289928	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	1192	0.16013563165580513	No Hit
GAACTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCT	911	0.12238553728056917	No Hit
TTCCTTGGGGTCAGAAACAAATTCTCAACAATGTATTTTTCTAATGAACCC	893	0.11996738176898822	No Hit
GATTGATACGGCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGC	887	0.11916132993179458	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTC	812	0.10908568196687396	No Hit
TGTTTTGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAGAGCTA	795	0.1068018684281586	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCACTTCCGTCGTA	792	0.10639884250956179	No Hit
TTCTTTGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGC	746	0.10021911175774381	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGAAC	30	2.1644664E-6	45.000004	13
TCGTTAC	35	1.2111559E-7	45.000004	23
GTACCAT	35	1.2111559E-7	45.000004	10
CGAACCC	35	1.2111559E-7	45.000004	32
GCGAACC	30	2.1644664E-6	45.000004	32
GACGTCA	30	2.1644664E-6	45.000004	38
CTCCCGC	30	2.1644664E-6	45.000004	38
TACGGGA	30	2.1644664E-6	45.000004	4
TCGATGT	30	2.1644664E-6	45.000004	16
TCTAGCG	60	0.0	45.000004	1
ACGGGAT	30	2.1644664E-6	45.000004	5
CGTTACA	35	1.2111559E-7	45.000004	24
ATTCCGA	30	2.1644664E-6	45.000004	12
AACGGAT	35	1.2111559E-7	45.000004	35
CCACTAA	35	1.2111559E-7	45.000004	34
TCTACGA	35	1.2111559E-7	45.000004	28
TGATTAC	70	0.0	45.000004	19
CACTAAG	35	1.2111559E-7	45.000004	35
AACGCTA	30	2.1644664E-6	45.000004	10
TCGCTAT	30	2.1644664E-6	45.000004	23