##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921708_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2889908 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.49218660248008 31.0 31.0 34.0 27.0 34.0 2 30.5534809412618 33.0 31.0 34.0 26.0 34.0 3 30.610557844747998 33.0 31.0 34.0 26.0 34.0 4 34.0713863555518 37.0 35.0 37.0 30.0 37.0 5 34.06884406008773 37.0 35.0 37.0 30.0 37.0 6 34.111740927392844 37.0 35.0 37.0 30.0 37.0 7 34.02447655773125 37.0 35.0 37.0 30.0 37.0 8 33.99519431068394 37.0 35.0 37.0 30.0 37.0 9 35.566387926536066 39.0 37.0 39.0 30.0 39.0 10-11 35.46479939845836 39.0 37.0 39.0 30.0 39.0 12-13 35.363859160914465 39.0 37.0 39.0 30.0 39.0 14-15 36.516176639533164 40.0 37.0 41.0 29.0 41.0 16-17 36.45785540577762 40.0 37.0 41.0 29.0 41.0 18-19 36.428501530152516 40.0 37.0 41.0 29.0 41.0 20-21 36.35066081688413 40.0 37.0 41.0 28.0 41.0 22-23 36.25738708637091 40.0 37.0 41.0 28.0 41.0 24-25 36.145974716150135 40.0 36.5 41.0 27.0 41.0 26-27 35.99962836187173 40.0 36.0 41.0 27.0 41.0 28-29 35.85964086053951 40.0 36.0 41.0 27.0 41.0 30-31 35.71023991075148 40.0 36.0 41.0 26.5 41.0 32-33 35.53071862495277 40.0 35.5 41.0 25.5 41.0 34-35 35.35198058208081 39.0 35.0 41.0 25.0 41.0 36-37 35.31662495830317 39.0 35.0 41.0 25.0 41.0 38-39 35.485920313034185 40.0 35.5 41.0 25.5 41.0 40-41 35.54167883545082 40.0 35.0 41.0 25.0 41.0 42-43 35.37390688561712 40.0 35.0 41.0 24.5 41.0 44-45 35.245189639254946 40.0 35.0 41.0 24.0 41.0 46-47 35.08118182308918 40.0 35.0 41.0 23.5 41.0 48-49 34.910699060316105 39.5 35.0 41.0 23.0 41.0 50-51 33.21881457818034 37.0 32.5 39.5 18.5 40.0 52-53 33.33546881077183 37.5 33.5 39.5 19.0 40.0 54-55 34.240304362630226 39.0 34.0 40.5 20.5 41.0 56-57 34.25351862412229 39.0 34.0 41.0 20.0 41.0 58-59 34.060303476788874 38.0 34.0 41.0 19.5 41.0 60-61 33.80904963064568 38.0 34.0 40.0 18.0 41.0 62-63 33.511049486696464 37.0 34.0 40.0 16.5 41.0 64-65 33.2177597003088 37.0 33.5 40.0 13.5 41.0 66-67 32.87941761467839 36.0 33.0 39.5 12.0 41.0 68-69 32.520816579628146 36.0 33.0 39.0 8.0 41.0 70-71 32.10930417162069 35.0 33.0 39.0 7.0 40.5 72-73 31.754045457502453 35.0 32.0 37.5 2.0 40.0 74-75 31.362176408383935 35.0 32.0 37.0 2.0 39.0 76-77 30.991223423029382 35.0 32.0 36.5 2.0 39.0 78-79 30.650802378484023 35.0 32.0 36.0 2.0 38.5 80-81 30.338757496778445 35.0 31.0 36.0 2.0 37.0 82-83 30.02826664378243 35.0 31.0 35.0 2.0 37.0 84-85 29.7719353003625 35.0 31.0 35.0 2.0 36.5 86-87 29.537843419236875 35.0 31.0 35.0 2.0 36.0 88-89 29.31551246614079 35.0 31.0 35.0 2.0 36.0 90-91 29.092204492322942 35.0 30.5 35.0 2.0 35.5 92-93 28.901195297566566 34.0 30.0 35.0 2.0 35.0 94-95 28.674845012367175 34.0 30.0 35.0 2.0 35.0 96-97 28.44329923305517 34.0 30.0 35.0 2.0 35.0 98-99 28.1755557616367 34.0 30.0 35.0 2.0 35.0 100-101 27.109486876398833 33.0 27.0 35.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 93867.0 3 16632.0 4 11211.0 5 8678.0 6 7949.0 7 8343.0 8 8591.0 9 9260.0 10 10048.0 11 10906.0 12 10895.0 13 11003.0 14 12049.0 15 12835.0 16 12964.0 17 13323.0 18 12631.0 19 11977.0 20 12154.0 21 12577.0 22 13672.0 23 16028.0 24 18304.0 25 21510.0 26 25790.0 27 30222.0 28 35352.0 29 42369.0 30 50413.0 31 61985.0 32 76253.0 33 99595.0 34 138620.0 35 203169.0 36 343261.0 37 621677.0 38 664530.0 39 119256.0 40 9.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.856557572853646 18.097416549014667 13.013880743454475 25.032145134677208 2 15.945330611637157 19.77357288414958 39.22095775311168 25.06013875110158 3 18.77644567374747 23.92115501545016 29.60648144942029 27.69591786138208 4 13.480288448553706 15.810307610590296 36.35340280235263 34.356001138503366 5 14.422564880992365 36.94617355011921 34.351903339664986 14.279358229223435 6 33.5638358986001 35.04835224464879 17.190032765463236 14.197779091287874 7 28.820934251864138 31.7094196935016 21.387749338822555 18.08189671581171 8 26.571714537269298 34.37664390805744 20.291224368877742 18.76041718579553 9 26.977400396782965 15.408785770074203 19.482991728324443 38.13082210481839 10-11 25.55187257900913 25.01089262039244 28.095087471462026 21.342147329136402 12-13 26.11132213749441 22.687607021381346 27.71716850086569 23.483902340258556 14-15 23.372273911451146 24.255515870351 24.94795499656264 27.424255221635214 16-17 23.55522897573674 27.244550271381023 25.858562749214446 23.341658003667792 18-19 23.64677452119352 26.637015842496258 27.0499056454574 22.666303990852818 20-21 24.11492093146563 25.937556078585555 26.858919127606264 23.08860386234255 22-23 24.093865121459224 25.586181054766772 26.634422922653954 23.68553090112005 24-25 23.91279892253412 25.82797652198805 26.514286426345997 23.744938129131835 26-27 23.606791817963302 26.035625220314955 26.566094313576905 23.79148864814484 28-29 23.758163109398687 26.278771061951296 26.415364338426713 23.547701490223304 30-31 23.981756543502456 25.984155504737018 26.25460966007564 23.779478291684892 32-33 23.779044165039465 26.02691135414134 26.110190687699035 24.083853793120156 34-35 24.132794605524104 26.085457982656756 26.163872500623754 23.617874911195386 36-37 24.26630896004227 25.848202259496595 26.247404098043127 23.638084682418008 38-39 23.952202937157264 25.907891235417246 26.27779559907412 23.862110228351362 40-41 24.06923470870763 25.826106966379225 26.355108170581477 23.749550154331665 42-43 24.00714998354512 25.852003871491718 26.069610558588565 24.071235586374595 44-45 23.893342504235157 25.894513943647834 26.234141235932718 23.97800231618429 46-47 24.11746707820535 25.815506202116804 26.069935573566873 23.997091146110968 48-49 23.85434741642091 25.94733313697001 26.06515113243793 24.13316831417115 50-51 23.916435462663696 26.02250241171561 26.16672863887365 23.894333486747048 52-53 24.152871758670475 25.817206142802263 26.106996292849622 23.92292580567764 54-55 23.656562105398923 25.70595671237018 26.40246553513887 24.235015647092027 56-57 23.738384476136883 25.83383347566153 26.26688565446181 24.16089639373978 58-59 23.811752076108338 25.613262266242227 26.365982111634374 24.20900354601506 60-61 23.709005290702564 25.747473197559152 26.511508556755636 24.032012954982648 62-63 23.836140639987214 25.770314047477843 26.416483154339833 23.97706215819511 64-65 23.59401260822872 25.6104450845157 26.40953253514156 24.386009772114022 66-67 23.648566774278716 25.671722982560123 26.28801186292387 24.39169838023729 68-69 23.76396482568767 25.595346332184004 26.38853473705158 24.252154105076748 70-71 23.63580740157835 25.461710325844862 26.310009342538365 24.59247293003843 72-73 23.639975626943148 25.649452689660436 26.241114711982753 24.469456971413663 74-75 23.696412830844785 25.763843324946194 26.282430091068175 24.257313753140842 76-77 23.75186230673828 25.4402497462756 26.295346464888965 24.512541482097156 78-79 23.685239783179377 25.5483708113922 26.323584634487073 24.442804770941347 80-81 23.905924439037086 25.629129967165724 26.19478733145278 24.27015826234441 82-83 23.77590113442409 25.612586926624115 26.284853007572767 24.32665893137903 84-85 23.70052695654767 25.676154566060976 26.314296622061857 24.3090218553295 86-87 23.799827008340223 25.696700673099865 26.198664343464053 24.30480797509586 88-89 23.67874492298473 25.45909881591797 26.304557106711645 24.557599154385652 90-91 23.69327604898949 25.459735991682024 26.350387772187915 24.496600187140572 92-93 23.86728542290144 25.266648321074907 26.444580967090126 24.421485288933535 94-95 23.7468522829857 25.147367431736896 26.5326230241042 24.573157261173204 96-97 23.8405710519119 24.917917877471545 26.54752525847219 24.693985812144355 98-99 23.703188756024296 24.986556802084742 26.443832402988317 24.86642203890265 100-101 23.92634557860691 24.854985617784937 26.551786986102655 24.666881817505498 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 100.0 1 82.0 2 105.5 3 155.0 4 136.0 5 134.5 6 222.0 7 483.5 8 744.0 9 796.0 10 703.5 11 641.5 12 678.5 13 741.0 14 846.5 15 933.5 16 1001.0 17 1072.5 18 1233.5 19 1416.0 20 1536.0 21 1691.5 22 1874.5 23 2017.0 24 2333.5 25 2839.5 26 3499.0 27 4648.5 28 6379.0 29 8851.0 30 12503.5 31 17847.0 32 25318.5 33 30816.5 34 34619.0 35 40680.0 36 48923.5 37 57342.5 38 65026.5 39 72317.5 40 78949.5 41 86209.0 42 93386.0 43 100217.5 44 106851.0 45 114083.0 46 119509.0 47 122903.0 48 125461.5 49 126303.0 50 125736.0 51 124596.0 52 123713.0 53 121923.5 54 119200.0 55 113326.5 56 103549.0 57 92336.5 58 83544.0 59 73443.5 60 60081.5 61 49561.0 62 41780.5 63 32628.0 64 23513.0 65 17420.0 66 13309.0 67 10531.0 68 8165.5 69 6148.0 70 4674.0 71 3485.0 72 2537.5 73 1902.5 74 1458.5 75 1113.0 76 808.0 77 560.0 78 392.5 79 286.0 80 213.0 81 148.5 82 122.5 83 104.5 84 73.0 85 63.5 86 63.5 87 48.5 88 42.0 89 33.5 90 28.5 91 27.0 92 20.5 93 20.0 94 19.5 95 14.0 96 10.0 97 5.5 98 4.5 99 5.5 100 4.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.05003619492385225 2 0.06931016489106227 3 0.06616127572227212 4 0.06595365665619805 5 0.06138603720256838 6 0.009688889750123534 7 0.012664763030518618 8 0.015640636310913704 9 0.005778730672395108 10-11 0.011661270877827253 12-13 0.020433176419456953 14-15 0.0367485746951114 16-17 0.02437793867486439 18-19 0.00951587386172847 20-21 0.01894523977925941 22-23 0.03375539982587681 24-25 0.03138508215486444 26-27 0.0200179382873088 28-29 0.01064047713629638 30-31 0.011211429568000088 32-33 0.008149048343407472 34-35 0.004740635342024729 36-37 5.709524317037083E-4 38-39 0.00370254001165435 40-41 9.688889750123533E-4 42-43 0.21678890815901405 44-45 0.18763573096444594 46-47 0.1941411283681003 48-49 0.20064652577175468 50-51 0.19206493770735955 52-53 0.19903747800968058 54-55 0.1960616047292855 56-57 0.19824160492306328 58-59 0.20645985962182878 60-61 0.2102316059888412 62-63 0.19649414445027316 64-65 0.1965633508056312 66-67 0.1947293823886435 68-69 0.18940049302607556 70-71 0.18177049234785328 72-73 0.19293001714933486 74-75 0.1913728741537793 76-77 0.1861823975019274 78-79 0.202947637087409 80-81 0.21396874917817454 82-83 0.21294795543664366 84-85 0.2072384311196066 86-87 0.22602795659931044 88-89 0.2188304956420758 90-91 0.2254050994010882 92-93 0.22082017835861903 94-95 0.22384795640553262 96-97 0.23071668717481666 98-99 0.22421128977116225 100-101 0.23043986175338452 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 2889908.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 57.83995380188992 #Duplication Level Percentage of deduplicated Percentage of total 1 76.9444577833657 44.504638835013424 2 12.541092626303657 14.507524362612518 3 4.221919901381568 7.325869561535686 4 1.9944976004095654 4.614465962626784 5 1.1206364488349116 3.2408780214662634 6 0.6848484741323352 2.3766962463065444 7 0.4626487362823902 1.8731707073153345 8 0.3546046660268732 1.6408254000743159 9 0.2657047602474971 1.3831515951891724 >10 1.3355694160142575 13.412467818275307 >50 0.054542517525780806 2.1307386330840123 >100 0.01707882644660691 1.6540319037219764 >500 0.001438945817501766 0.561654063030235 >1k 9.592972112496341E-4 0.773886889748449 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 3.460317767901262E-5 2 0.0 0.0 0.0 0.0 3.460317767901262E-5 3 0.0 0.0 0.0 0.0 3.460317767901262E-5 4 0.0 0.0 0.0 0.0 3.460317767901262E-5 5 0.0 0.0 0.0 3.460317767901262E-5 3.460317767901262E-5 6 0.0 0.0 0.0 3.460317767901262E-5 3.460317767901262E-5 7 0.0 0.0 0.0 3.460317767901262E-5 3.460317767901262E-5 8 0.0 0.0 0.0 3.460317767901262E-5 3.460317767901262E-5 9 0.0 0.0 0.0 3.460317767901262E-5 3.460317767901262E-5 10-11 0.0 0.0 0.0 3.460317767901262E-5 3.460317767901262E-5 12-13 0.0 0.0 0.0 3.460317767901262E-5 2.0761906607407571E-4 14-15 0.0 0.0 0.0 3.460317767901262E-5 2.24920654913582E-4 16-17 0.0 0.0 0.0 5.190476651851893E-5 2.4222224375308832E-4 18-19 0.0 0.0 0.0 6.920635535802523E-5 2.5952383259259464E-4 20-21 0.0 0.0 0.0 6.920635535802523E-5 2.941270102716073E-4 22-23 0.0 0.0 0.0 6.920635535802523E-5 3.1142859911111357E-4 24-25 0.0 0.0 0.0 2.941270102716073E-4 3.1142859911111357E-4 26-27 0.0 0.0 0.0 9.342857973333406E-4 3.1142859911111357E-4 28-29 0.0 3.460317767901262E-5 0.0 0.0034603177679012618 3.1142859911111357E-4 30-31 0.0 3.460317767901262E-5 0.0 0.013253017051061834 3.1142859911111357E-4 32-33 0.0 3.460317767901262E-5 0.0 0.03998397180809908 3.1142859911111357E-4 34-35 0.0 3.460317767901262E-5 0.0 0.07604048294963023 3.1142859911111357E-4 36-37 0.0 3.460317767901262E-5 0.0 0.1318727101347171 3.1142859911111357E-4 38-39 0.0 3.460317767901262E-5 0.0 0.2201973211603968 3.1142859911111357E-4 40-41 0.0 3.460317767901262E-5 0.0 0.3187471711902248 3.1142859911111357E-4 42-43 0.0 3.460317767901262E-5 0.0 0.4252903552639046 3.2873018795061986E-4 44-45 0.0 3.460317767901262E-5 0.0 0.556799732032992 3.8063495446913885E-4 46-47 0.0 3.460317767901262E-5 0.0 0.7138808571068698 4.49841309827164E-4 48-49 0.0 3.460317767901262E-5 0.0 0.8717059505008464 4.8444448750617665E-4 50-51 0.0 3.460317767901262E-5 0.0 1.0351540602676625 4.8444448750617665E-4 52-53 0.0 3.460317767901262E-5 0.0 1.2044674086510714 5.190476651851893E-4 54-55 0.0 3.460317767901262E-5 0.0 1.4032799660058384 5.882540205432146E-4 56-57 0.0 3.460317767901262E-5 0.0 1.6308996687783832 6.055556093827209E-4 58-59 0.0 3.460317767901262E-5 0.0 1.86827746765641 6.228571982222271E-4 60-61 0.0 3.460317767901262E-5 0.0 2.1187871724636214 6.228571982222271E-4 62-63 0.0 3.460317767901262E-5 0.0 2.376632750938784 6.920635535802524E-4 64-65 0.0 3.460317767901262E-5 0.0 2.6665900783000707 7.26666731259265E-4 66-67 0.0 3.460317767901262E-5 0.0 3.0010816953342463 7.26666731259265E-4 68-69 0.0 3.460317767901262E-5 0.0 3.361802521049113 7.26666731259265E-4 70-71 0.0 3.460317767901262E-5 0.0 3.7382850941967702 7.439683200987713E-4 72-73 0.0 3.460317767901262E-5 0.0 4.133020843570106 8.304762642963029E-4 74-75 0.0 3.460317767901262E-5 0.0 4.551580880775443 8.304762642963029E-4 76-77 0.0 3.460317767901262E-5 0.0 5.017616477756386 8.304762642963029E-4 78-79 0.0 3.460317767901262E-5 0.0 5.543602080066217 8.304762642963029E-4 80-81 0.0 3.460317767901262E-5 0.0 6.07548752417032 8.477778531358091E-4 82-83 0.0 3.460317767901262E-5 0.0 6.631162652928744 8.650794419753154E-4 84-85 0.0 6.920635535802523E-5 0.0 7.2159736572928965 8.650794419753154E-4 86-87 0.0 6.920635535802523E-5 0.0 7.851426412190284 8.650794419753154E-4 88-89 0.0 6.920635535802523E-5 0.0 8.532520758446289 8.650794419753154E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 4100 0.0 45.264492 1 GGTATCA 2160 0.0 45.04689 1 TCAACGC 4995 0.0 35.824955 4 CAACGCA 5180 0.0 34.44968 5 ATCAACG 5235 0.0 34.363293 3 TATCAAC 5325 0.0 34.051678 2 AACGCAG 5540 0.0 32.281094 6 GTACATG 7490 0.0 28.38971 1 ACGCAGA 6370 0.0 27.929848 7 TACATGG 7675 0.0 27.027 2 CGCAGAG 6475 0.0 26.892153 8 ACATGGG 8015 0.0 25.464619 3 CATGGGG 6865 0.0 23.162426 4 GCAGAGT 7560 0.0 21.653429 9 AGAGTAC 6355 0.0 19.674421 10-11 TAAGGCG 1255 0.0 19.286507 5 ATGGGGG 4275 0.0 18.539904 5 GAGTACA 5765 0.0 18.3599 1 GTATTAA 2180 0.0 18.288898 1 GTATAGG 865 0.0 17.558952 1 >>END_MODULE