FastQCFastQC Report
Mon 15 Aug 2016
SRR2921707_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2921707_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1989763
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA15950.052.7449261
GTATCAA29150.041.0894281
TCAACGC36900.032.021524
TATCAAC37400.031.4665432
CAACGCA37550.031.3668635
ATCAACG38000.031.2194563
AACGCAG41050.028.5746146
GTACATG47150.028.3264871
TACATGG50350.026.3892782
ACATGGG51900.024.7782653
TAAGGCG6150.023.9395455
ACGCAGA48400.023.7446927
CGCAGAG50550.021.9832178
CATGGGG45750.021.8856934
TAAGGTA4950.021.0904774
TCTATAC4400.020.4913183
TAAGGTG10500.019.9018155
GCAGAGT54650.019.2921759
GTATTAA11400.019.1787851
GGTAAGG8550.018.8704283
Produced by FastQC (version 0.11.5)