##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921707_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1989763 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.26666995013979 33.0 31.0 34.0 28.0 34.0 2 31.405867935025427 34.0 31.0 34.0 28.0 34.0 3 31.471932586946284 34.0 31.0 34.0 28.0 34.0 4 34.948263185113 37.0 35.0 37.0 32.0 37.0 5 34.663476001915804 37.0 35.0 37.0 32.0 37.0 6 34.63561891541857 37.0 35.0 37.0 32.0 37.0 7 34.512516314757086 37.0 35.0 37.0 31.0 37.0 8 34.45053204828917 37.0 35.0 37.0 31.0 37.0 9 36.03022721801541 39.0 37.0 39.0 31.0 39.0 10-11 35.92039730359847 39.0 37.0 39.0 31.0 39.0 12-13 35.83650565419097 39.0 37.0 39.0 30.0 39.0 14-15 37.05792926092203 40.0 38.0 41.0 31.0 41.0 16-17 37.010578144231246 40.0 38.0 41.0 31.0 41.0 18-19 36.96361626987736 40.0 37.5 41.0 30.5 41.0 20-21 36.897546089659926 40.0 37.0 41.0 30.0 41.0 22-23 36.79796940640669 40.0 37.0 41.0 30.0 41.0 24-25 36.706620587477005 40.0 37.0 41.0 30.0 41.0 26-27 36.56605133375181 40.0 37.0 41.0 30.0 41.0 28-29 36.43201300858444 40.0 37.0 41.0 29.5 41.0 30-31 36.2606539070231 40.0 36.5 41.0 29.0 41.0 32-33 36.193984157912276 40.0 36.0 41.0 28.5 41.0 34-35 36.31741971279997 40.0 37.0 41.0 29.5 41.0 36-37 36.294301130335626 40.0 37.0 41.0 29.0 41.0 38-39 36.1678491358016 40.0 36.0 41.0 28.0 41.0 40-41 36.066646128207225 40.0 36.0 41.0 28.0 41.0 42-43 35.919387635612885 40.0 36.0 41.0 27.5 41.0 44-45 35.76384071871877 40.0 35.5 41.0 27.0 41.0 46-47 35.58212510736203 40.0 35.0 41.0 26.0 41.0 48-49 35.41707756149853 40.0 35.0 41.0 26.0 41.0 50-51 35.239387052628885 39.0 35.0 41.0 25.5 41.0 52-53 35.04645829679213 39.0 35.0 41.0 24.5 41.0 54-55 34.813150611404474 39.0 35.0 41.0 24.0 41.0 56-57 34.565237417722614 38.5 34.5 41.0 23.0 41.0 58-59 34.30887045341581 38.0 34.0 40.0 23.0 41.0 60-61 34.0181973933579 37.5 34.0 40.0 22.5 41.0 62-63 33.69988636837654 37.0 34.0 40.0 22.0 41.0 64-65 33.34597989810847 36.5 34.0 39.5 20.5 41.0 66-67 32.98316407531952 36.0 33.0 39.0 20.0 41.0 68-69 32.61690035446432 35.5 33.0 39.0 18.5 40.5 70-71 32.21615689908798 35.0 33.0 38.0 16.5 40.0 72-73 31.8560763266781 35.0 33.0 37.0 13.5 39.5 74-75 31.459279321205592 35.0 32.0 37.0 9.5 39.0 76-77 28.778643235400395 32.0 28.0 34.5 4.5 36.0 78-79 30.343068496097274 34.5 31.0 35.0 5.5 37.0 80-81 30.528367448786614 35.0 31.5 35.0 2.0 37.0 82-83 30.36501834640608 35.0 32.0 35.0 2.0 36.5 84-85 30.172577588386154 35.0 31.0 35.0 2.0 36.0 86-87 29.965315718505167 35.0 31.0 35.0 2.0 36.0 88-89 29.69477998133446 34.5 31.0 35.0 2.0 35.5 90-91 29.497501209943096 34.0 31.0 35.0 2.0 35.0 92-93 29.340561664881697 34.0 31.0 35.0 2.0 35.0 94-95 29.22984571529373 34.0 31.0 35.0 2.0 35.0 96-97 29.012988230256568 34.0 31.0 35.0 2.0 35.0 98-99 28.792754212436357 34.0 30.5 35.0 2.0 35.0 100-101 27.646315164167792 33.0 27.5 34.5 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 41688.0 3 14464.0 4 8005.0 5 5874.0 6 5153.0 7 5069.0 8 5197.0 9 5648.0 10 6199.0 11 6594.0 12 6990.0 13 7519.0 14 7976.0 15 8827.0 16 9455.0 17 10475.0 18 9881.0 19 8705.0 20 8456.0 21 8249.0 22 8578.0 23 9562.0 24 11188.0 25 13053.0 26 15723.0 27 18487.0 28 22134.0 29 27021.0 30 32473.0 31 40571.0 32 51082.0 33 67149.0 34 94529.0 35 143055.0 36 253580.0 37 473797.0 38 464712.0 39 52644.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.35432671299494 19.250112263164993 12.998262186342757 26.397298837497306 2 15.993026298133293 20.87235602667858 36.38049996959434 26.75411770559379 3 18.347651349438674 23.7489746517837 28.943217824170876 28.960156174606748 4 13.62948942250618 16.22984757613026 34.09274701216144 36.04791598920212 5 14.696977237412865 36.5842194610795 33.981660636825616 14.73714266468202 6 34.843154441210054 34.54431962559706 16.032342109072196 14.580183824120684 7 29.283990103343964 31.332073216759987 20.63708089857938 18.74685578131667 8 26.77288702222325 34.17773875582167 19.801604512698244 19.247769709256833 9 26.609953044659086 14.874635823462393 19.157809246628872 39.35760188524965 10-11 25.96140091086107 24.81793463572471 27.69711543900713 21.52354901440709 12-13 26.22253683366202 22.4508683476768 27.226227738476478 24.100367080184707 14-15 23.493700685694698 24.278809304700648 24.370005744697213 27.85748426490744 16-17 23.81190624210019 27.106846393263922 25.432626900791703 23.648620463844185 18-19 23.821494777318282 26.354747329354744 26.729671722533837 23.094086170793137 20-21 24.3121410058796 25.659639524545913 26.54585148668609 23.482367982888398 22-23 24.236529677152504 25.509294322992236 26.24817629034212 24.005999709513144 24-25 24.071928363129675 25.625610156011476 26.225758666571174 24.07670281428767 26-27 23.77535391508551 25.79728427419608 26.3847324292641 24.042629381454308 28-29 23.946934865515253 26.010042881525962 26.226661935559097 23.81636031739969 30-31 24.190725840400816 25.747586333425904 25.953949641924094 24.107738184249182 32-33 23.878175405581867 25.84324387084711 25.8756632784616 24.40291744510942 34-35 24.257592827755506 25.81610442718824 25.949802431041864 23.97650031401439 36-37 24.386026413761993 25.590590458527927 25.997187993561788 24.02619513414829 38-39 24.114661925732342 25.666279266997943 26.069518347038905 24.149540460230806 40-41 24.27629938925589 25.532164583274696 26.117000317635185 24.074535709834226 42-43 24.265956505742874 25.509399898270807 25.779530115661668 24.445113480324647 44-45 24.009769616382478 25.60229549294897 25.992115148584816 24.395819742083734 46-47 24.15714200633411 25.55687317230934 25.86518544094635 24.420799380410195 48-49 23.860868000564935 25.700753967994682 25.87807541891439 24.56030261252599 50-51 23.94885097894649 25.75453626410409 25.85826968729952 24.438343069649907 52-53 24.185143154669767 25.556757278352503 25.843905925208166 24.41419364176956 54-55 23.685586038823153 25.467824368531964 26.039848438625334 24.806741154019548 56-57 23.680086488920743 25.542453102830244 25.997188406423543 24.780272001825477 58-59 23.723514891174368 25.390142183811044 25.997892902973508 24.888450022041077 60-61 23.59182670306548 25.39090899267224 26.12056892113616 24.896695383126122 62-63 23.6987596271467 25.419085470388364 26.05132350254089 24.830831399924048 64-65 23.480107783807945 25.26489059852995 25.936038118001605 25.31896349966051 66-67 23.450816556002323 25.363925100925478 25.844968007579215 25.34029033549298 68-69 23.53201901956185 25.33119937731123 25.830521956893985 25.30625964623293 70-71 23.393194540625707 25.217721693413857 25.780124349173445 25.608959416786988 72-73 23.346712831297168 25.26138535115903 25.688761774720692 25.703140042823108 74-75 23.28661383598224 25.327435292130495 25.686943005598096 25.69900786628917 76-77 23.244052858554333 25.050667154260108 25.885847222568525 25.819432764617034 78-79 23.199385738541007 25.08706270904293 25.810977785836926 25.902573766579135 80-81 23.189812827655953 25.08974903461797 25.75124034335088 25.969197794375198 82-83 22.999402031885097 25.078993875288337 25.835439878566476 26.086164214260094 84-85 22.945111028704677 24.971823284287538 25.86264243917462 26.220423247833164 86-87 22.924943724389315 25.143354448840995 25.725497729864998 26.20620409690469 88-89 22.770983680304845 24.860650645617778 25.78443788346747 26.583927790609906 90-91 22.59126382551342 24.751024193782126 25.891946453347042 26.76576552735741 92-93 22.64856298871596 24.591496879735363 25.9800718411359 26.77986829041278 94-95 22.442286524223828 24.41062641676342 26.08357584804757 27.063511210965185 96-97 22.422834250873663 24.273656141655998 26.122341782411624 27.181167825058715 98-99 22.252217683115756 24.287603615638282 26.015161235444435 27.44501746580153 100-101 22.10804318108717 24.215005829848828 26.05482570762303 27.62212528144098 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 56.0 1 48.5 2 70.5 3 104.5 4 98.5 5 110.0 6 173.0 7 329.5 8 501.0 9 535.0 10 463.0 11 408.5 12 410.5 13 440.5 14 461.0 15 470.5 16 531.5 17 595.0 18 641.0 19 719.5 20 821.0 21 922.5 22 1035.5 23 1211.5 24 1383.5 25 1631.0 26 1998.5 27 2537.5 28 3291.5 29 4572.0 30 6653.0 31 9546.5 32 13701.0 33 17384.5 34 20496.0 35 24466.5 36 29532.0 37 34738.0 38 39732.0 39 44810.5 40 49310.5 41 53474.0 42 58400.5 43 64018.0 44 69485.5 45 75390.5 46 79446.0 47 82508.5 48 86417.0 49 88891.5 50 89323.0 51 88922.5 52 88971.5 53 89473.0 54 88280.5 55 83886.5 56 77289.5 57 69253.0 58 62770.5 59 56113.0 60 46797.0 61 38669.0 62 32109.5 63 25072.0 64 18395.0 65 13593.0 66 10470.5 67 8417.5 68 6769.0 69 5359.0 70 4078.5 71 2947.0 72 2119.5 73 1607.0 74 1244.5 75 954.5 76 721.5 77 478.0 78 299.5 79 168.0 80 95.0 81 59.5 82 35.0 83 23.0 84 15.0 85 10.5 86 8.5 87 8.0 88 4.5 89 1.0 90 1.5 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.16881407484207916 2 1.005144833831969E-4 3 0.009800162129861697 4 0.005729325552842223 5 0.02462604842888324 6 0.0017590034592059457 7 0.0 8 0.0 9 0.0 10-11 0.04952851168707027 12-13 3.5180069184118914E-4 14-15 0.005126238652543041 16-17 0.0 18-19 0.0014323313882105557 20-21 1.005144833831969E-4 22-23 0.0 24-25 2.7641482930379144E-4 26-27 0.0027892769138837138 28-29 0.004774437960701853 30-31 0.015604873545241319 32-33 0.010755049722002068 34-35 0.010277605925931882 36-37 0.004045707956173675 38-39 2.5128620845799223E-5 40-41 0.002965177259804308 42-43 0.00839295936249694 44-45 0.006282155211449806 46-47 0.0029903058806501075 48-49 0.007840129703889358 50-51 0.0023872189803509263 52-53 0.001356945525673158 54-55 0.003719035885178285 56-57 0.007237042803590177 58-59 0.01487614354071314 60-61 0.006910370732594786 62-63 0.020178282539176775 64-65 0.03927603438198419 66-67 0.05865020105409539 68-69 0.0486741385783131 70-71 0.06684213144982594 72-73 0.03266720709953899 74-75 0.0258824794711732 76-77 0.226283230716422 78-79 0.08465832362949759 80-81 0.06540980006161538 82-83 0.02646043775062658 84-85 0.049025939270154285 86-87 0.06709341765828393 88-89 0.2920197028490328 90-91 0.29578899597590264 92-93 0.053750119989164534 94-95 0.0096996476464785 96-97 0.014851014919867341 98-99 8.795017296029729E-4 100-101 1.5077172507479535E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 1989763.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 62.63817294044047 #Duplication Level Percentage of deduplicated Percentage of total 1 79.40483524094051 49.73773802129215 2 11.640058733005308 14.582240239097418 3 3.6653620215256657 6.887747405809415 4 1.695781375697056 4.248825883203609 5 0.945850310086885 2.962316764949578 6 0.5944305115057849 2.2340424708464304 7 0.4089745228817088 1.7932191824749026 8 0.2921872700239477 1.4641661400604171 9 0.2230229061372135 1.2572772627872164 >10 1.080750657593594 11.258494553321016 >50 0.0364255746982061 1.5083410068194494 >100 0.010711238638801614 1.2491123459129023 >500 0.0012072279489734072 0.4887479145227702 >1k 4.0240931632444385E-4 0.3277308089027717 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 5.025724169159845E-5 2 0.0 0.0 0.0 0.0 5.025724169159845E-5 3 0.0 0.0 0.0 0.0 5.025724169159845E-5 4 0.0 0.0 0.0 0.0 5.025724169159845E-5 5 0.0 5.025724169159845E-5 0.0 0.0 5.025724169159845E-5 6 0.0 5.025724169159845E-5 0.0 0.0 1.005144833831969E-4 7 0.0 1.005144833831969E-4 0.0 0.0 1.005144833831969E-4 8 0.0 1.005144833831969E-4 0.0 0.0 1.005144833831969E-4 9 0.0 1.005144833831969E-4 0.0 0.0 1.005144833831969E-4 10-11 0.0 1.005144833831969E-4 0.0 0.0 1.5077172507479533E-4 12-13 0.0 1.256431042289961E-4 0.0 0.0 2.7641482930379144E-4 14-15 0.0 1.5077172507479533E-4 0.0 0.0 6.030869002991814E-4 16-17 1.005144833831969E-4 1.5077172507479533E-4 0.0 2.5128620845799223E-5 7.538586253739767E-4 18-19 1.005144833831969E-4 1.5077172507479533E-4 0.0 5.025724169159845E-5 8.041158670655751E-4 20-21 1.005144833831969E-4 1.5077172507479533E-4 0.0 5.025724169159845E-5 8.543731087571736E-4 22-23 1.005144833831969E-4 1.5077172507479533E-4 0.0 1.5077172507479533E-4 9.800162129861697E-4 24-25 1.005144833831969E-4 1.5077172507479533E-4 0.0 4.020579335327876E-4 0.0011056593172151657 26-27 1.005144833831969E-4 1.5077172507479533E-4 0.0 0.0012564310422899612 0.001155916558906764 28-29 1.005144833831969E-4 1.5077172507479533E-4 0.0 0.006558570040753598 0.0012061738005983626 30-31 1.005144833831969E-4 1.5077172507479533E-4 0.0 0.02857124190167372 0.0012313024214441618 32-33 1.256431042289961E-4 1.5077172507479533E-4 0.0 0.0803613294648659 0.0012564310422899612 34-35 1.5077172507479533E-4 1.5077172507479533E-4 0.0 0.16758277242063502 0.0014574600090563549 36-37 1.5077172507479533E-4 1.7590034592059457E-4 0.0 0.2975479994351086 0.0014574600090563549 38-39 1.5077172507479533E-4 2.010289667663938E-4 0.0 0.4887516754507949 0.0015077172507479534 40-41 1.5077172507479533E-4 2.010289667663938E-4 0.0 0.6994049040011299 0.0015077172507479534 42-43 1.5077172507479533E-4 2.512862084579922E-4 0.0 0.924783504367103 0.0015077172507479534 44-45 1.5077172507479533E-4 2.512862084579922E-4 0.0 1.2094907785500082 0.001557974492439552 46-47 1.5077172507479533E-4 2.512862084579922E-4 0.0 1.5435255354532174 0.0016584889758227486 48-49 1.5077172507479533E-4 2.512862084579922E-4 0.0 1.871956609907813 0.0017590034592059457 50-51 1.5077172507479533E-4 2.512862084579922E-4 0.0 2.198201494348824 0.0018595179425891426 52-53 1.5077172507479533E-4 2.7641482930379144E-4 0.0 2.527788485362327 0.00193490380512654 54-55 1.5077172507479533E-4 3.0154345014959065E-4 0.0 2.9171815939888317 0.0020102896676639378 56-57 1.5077172507479533E-4 3.5180069184118914E-4 0.0 3.375678409941284 0.0020102896676639378 58-59 1.5077172507479533E-4 4.52315175224386E-4 0.0 3.8416132976640935 0.0020102896676639378 60-61 1.5077172507479533E-4 4.52315175224386E-4 0.0 4.312498523693526 0.0020102896676639378 62-63 1.5077172507479533E-4 4.52315175224386E-4 0.0 4.783936579381564 0.0020102896676639378 64-65 1.5077172507479533E-4 4.774437960701852E-4 0.0 5.313497135085937 0.002110804151047135 66-67 2.010289667663938E-4 5.025724169159844E-4 0.0 5.938646964487731 0.002110804151047135 68-69 2.010289667663938E-4 5.528296586075829E-4 0.0 6.59761991754797 0.002161061392738733 70-71 2.010289667663938E-4 5.528296586075829E-4 0.0 7.254557452319698 0.002161061392738733 72-73 2.010289667663938E-4 5.528296586075829E-4 0.0 7.9374277238042925 0.0025379907054257217 74-75 2.512862084579922E-4 5.528296586075829E-4 0.0 8.66472539694426 0.0025631193262715206 76-77 2.512862084579922E-4 5.528296586075829E-4 0.0 9.478415268552084 0.0025631193262715206 78-79 2.512862084579922E-4 5.528296586075829E-4 0.0 10.355102592620327 0.0026133765679631194 80-81 2.512862084579922E-4 5.77958279453382E-4 0.0 11.243625497106942 0.0026636338096547177 82-83 2.512862084579922E-4 6.030869002991813E-4 0.0 12.144838355120685 0.0029651772598043085 84-85 2.512862084579922E-4 6.282155211449806E-4 0.0 13.10125879313265 0.0029651772598043085 86-87 2.512862084579922E-4 7.036013836823783E-4 0.0 14.121631571197172 0.003065691743187505 88-89 2.512862084579922E-4 7.036013836823783E-4 0.0 15.222516450451636 0.0031662062265707023 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 1595 0.0 52.744926 1 GTATCAA 2915 0.0 41.089428 1 TCAACGC 3690 0.0 32.02152 4 TATCAAC 3740 0.0 31.466543 2 CAACGCA 3755 0.0 31.366863 5 ATCAACG 3800 0.0 31.219456 3 AACGCAG 4105 0.0 28.574614 6 GTACATG 4715 0.0 28.326487 1 TACATGG 5035 0.0 26.389278 2 ACATGGG 5190 0.0 24.778265 3 TAAGGCG 615 0.0 23.939545 5 ACGCAGA 4840 0.0 23.744692 7 CGCAGAG 5055 0.0 21.983217 8 CATGGGG 4575 0.0 21.885693 4 TAAGGTA 495 0.0 21.090477 4 TCTATAC 440 0.0 20.491318 3 TAAGGTG 1050 0.0 19.901815 5 GCAGAGT 5465 0.0 19.292175 9 GTATTAA 1140 0.0 19.178785 1 GGTAAGG 855 0.0 18.870428 3 >>END_MODULE