##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921704_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2978522 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.409604159378375 33.0 31.0 34.0 29.0 34.0 2 31.5375595681348 34.0 31.0 34.0 29.0 34.0 3 31.613003026333196 34.0 31.0 34.0 28.0 34.0 4 35.086595297936356 37.0 35.0 37.0 32.0 37.0 5 34.835091699843076 37.0 35.0 37.0 32.0 37.0 6 34.81047009221352 37.0 35.0 37.0 32.0 37.0 7 34.701499267086156 37.0 35.0 37.0 32.0 37.0 8 34.6428278857769 37.0 35.0 37.0 32.0 37.0 9 36.24063411316082 39.0 37.0 39.0 32.0 39.0 10-11 36.131952021841705 39.0 37.0 39.0 32.0 39.0 12-13 36.05666417773648 39.0 37.0 39.0 32.0 39.0 14-15 37.30458915529246 40.0 38.0 41.0 32.0 41.0 16-17 37.27263756990884 40.0 38.0 41.0 31.0 41.0 18-19 37.22786016017341 40.0 38.0 41.0 31.0 41.0 20-21 37.168537449110666 40.0 38.0 41.0 31.0 41.0 22-23 37.08390386238544 40.0 38.0 41.0 31.0 41.0 24-25 37.002578795792004 40.0 37.0 41.0 31.0 41.0 26-27 36.87394922716703 40.0 37.0 41.0 30.0 41.0 28-29 36.7573242702253 40.0 37.0 41.0 30.0 41.0 30-31 36.61126944840427 40.0 37.0 41.0 30.0 41.0 32-33 36.56681518551819 40.0 37.0 41.0 30.0 41.0 34-35 36.707756900905885 40.0 37.0 41.0 30.0 41.0 36-37 36.70806510745933 40.0 37.0 41.0 30.0 41.0 38-39 36.60714542313268 40.0 37.0 41.0 30.0 41.0 40-41 36.536095754874395 40.0 37.0 41.0 30.0 41.0 42-43 36.42348369426178 40.0 37.0 41.0 30.0 41.0 44-45 36.30106912085927 40.0 36.0 41.0 29.0 41.0 46-47 36.150674227015955 40.0 36.0 41.0 28.5 41.0 48-49 36.008758202893915 40.0 36.0 41.0 28.0 41.0 50-51 35.85432069999818 40.0 35.0 41.0 28.0 41.0 52-53 35.68277538322698 39.0 35.0 41.0 28.0 41.0 54-55 35.46915013553702 39.0 35.0 41.0 27.0 41.0 56-57 35.24454628839404 39.0 35.0 41.0 27.0 41.0 58-59 35.0059856868608 38.5 35.0 40.5 26.0 41.0 60-61 34.72525803066085 38.0 34.5 40.0 26.0 41.0 62-63 34.421336824102696 37.5 34.0 40.0 26.0 41.0 64-65 34.084056790582714 37.0 34.0 40.0 26.0 41.0 66-67 33.729233156579 36.5 34.0 39.0 25.0 41.0 68-69 33.361199279374134 36.0 34.0 39.0 24.0 41.0 70-71 32.95918378309779 35.5 33.0 38.5 23.0 40.0 72-73 32.590509991196974 35.0 33.0 37.5 22.5 39.5 74-75 32.18422392045451 35.0 33.0 37.0 21.5 39.0 76-77 29.48123398114904 33.0 29.0 34.5 17.0 36.5 78-79 31.048389436102873 34.5 31.5 36.0 19.0 37.0 80-81 31.22382174783332 35.0 32.0 35.5 20.0 37.0 82-83 31.048282168135742 35.0 32.0 35.0 19.0 37.0 84-85 30.851608616622606 35.0 32.0 35.0 18.0 36.0 86-87 30.647331797448533 35.0 32.0 35.0 17.5 36.0 88-89 30.38546550940366 35.0 32.0 35.0 10.5 36.0 90-91 30.19349193996217 34.5 31.5 35.0 6.0 35.0 92-93 30.041667142294063 34.0 31.0 35.0 4.0 35.0 94-95 29.936835450602683 34.0 31.0 35.0 2.0 35.0 96-97 29.74226747359932 34.0 31.0 35.0 2.0 35.0 98-99 29.54471529839296 34.0 31.0 35.0 2.0 35.0 100-101 28.431537017352902 33.0 29.0 34.5 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 54494.0 3 18293.0 4 10014.0 5 7200.0 6 6071.0 7 6180.0 8 6429.0 9 6955.0 10 7736.0 11 8393.0 12 8797.0 13 9452.0 14 9992.0 15 10779.0 16 11247.0 17 12032.0 18 11538.0 19 10661.0 20 10561.0 21 10290.0 22 11080.0 23 12631.0 24 15066.0 25 17918.0 26 21661.0 27 26241.0 28 31433.0 29 38508.0 30 46561.0 31 58103.0 32 74112.0 33 97717.0 34 140821.0 35 210649.0 36 370585.0 37 723660.0 38 762313.0 39 82345.0 40 4.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.45364121593922 18.858566301806878 13.364885684104536 26.32290679814937 2 15.320298443622486 20.64254080635376 37.46627098903851 26.57088976098524 3 18.308969121353886 24.391722939339004 28.322846598641398 28.97646134066571 4 13.276422150033994 16.702979023444385 35.1783972534898 34.84220157303182 5 14.6447042893666 37.04258806706654 33.922624362817814 14.390083280749048 6 34.08843449938609 35.017003793580095 16.979116339925458 13.915445367108362 7 29.72595132753762 31.117111104097937 20.49560150974208 18.661336058622364 8 27.03790672017867 34.53125409179452 19.534755828561952 18.896083359464864 9 26.867849424495866 15.700285947479268 18.696707994812186 38.73515663321268 10-11 25.901367696615623 25.12615150407662 27.508837827379196 21.46364297192856 12-13 26.673146411170006 22.28298521493531 27.23075696341714 23.813111410477543 14-15 23.75654342591974 23.799066671009086 24.471900914963246 27.97248898810793 16-17 24.21053126349243 26.82216213276249 25.109819568228808 23.85748703551627 18-19 24.096516603144163 26.42751048188467 26.255929214711436 23.22004370025973 20-21 24.773779507203265 25.52133449274973 26.074530553867536 23.630355446179465 22-23 24.459178075569024 25.33919507729001 25.853863090485817 24.347763756655148 24-25 24.298493722430557 25.551321696497382 25.83933565250848 24.310848928563576 26-27 24.159603522727828 25.767917028784122 25.855345625825414 24.21713382266264 28-29 24.244337028933526 26.00956935549966 25.648783735621077 24.097309879945737 30-31 24.60491114677262 25.674286207425716 25.556539437025037 24.164263208776624 32-33 24.27714571317381 25.65888859526976 25.541937149762656 24.522028541793773 34-35 24.551702347483104 25.727458531312923 25.633408781312 24.08743033989197 36-37 24.582937565954236 25.662261939416283 25.599543511916334 24.15525698271315 38-39 24.51529651283422 25.75544179294294 25.545068997308064 24.184192696914778 40-41 24.699131839085958 25.54405897752921 25.56289445167702 24.193914731707807 42-43 24.480303562956372 25.496461151912765 25.486488782427408 24.53674650270345 44-45 24.43152658449578 25.567491313433095 25.599724407049578 24.401257695021545 46-47 24.49375021194116 25.545062299789052 25.40623034822814 24.55495714004165 48-49 24.329954783857165 25.566603615108935 25.60697966809709 24.496461932936803 50-51 24.4189064327721 25.596521127195615 25.532997855250205 24.45157458478208 52-53 24.58854933370668 25.51876299645907 25.506676195095075 24.38601147473917 54-55 24.165850510661286 25.351859207297355 25.770742813322485 24.71154746871887 56-57 24.23209233946603 25.481709776962912 25.647947139809112 24.638250743761944 58-59 24.359264732029605 25.418735488585035 25.67991367486741 24.54208610451795 60-61 24.401628316373383 25.403108695557286 25.711423094653945 24.483839893415386 62-63 24.33063257515655 25.42132918942834 25.693302337998585 24.554735897416524 64-65 24.130977189982826 25.242029895543443 25.731270613497315 24.895722300976416 66-67 24.17764934303828 25.516667727686627 25.52528466549568 24.780398263779414 68-69 24.226395839848546 25.453500781153686 25.53680592622053 24.783297452777237 70-71 24.143072548218548 25.226629190229428 25.617514567699484 25.012783693852537 72-73 24.153795491600047 25.370694375944275 25.487000528801723 24.988509603653956 74-75 24.10065322469875 25.445538469598404 25.46145685462787 24.992351451074978 76-77 24.005368057901798 25.145373684401807 25.67886481997219 25.170393437724204 78-79 23.988215448616064 25.22698786597803 25.639010326183747 25.14578635922216 80-81 24.123878942504863 25.36960943716694 25.40544027328866 25.10107134703954 82-83 24.067369876088136 25.478551933534852 25.449871896956054 25.004206293420957 84-85 24.073811564082675 25.374316542485133 25.46746528924315 25.08440660418904 86-87 23.897882056187107 25.524967252014854 25.42854589538988 25.148604796408154 88-89 23.895074459756373 25.313017198562154 25.452508228876415 25.339400112805055 90-91 23.829561687141833 25.287528951574178 25.49154536582869 25.3913639954553 92-93 23.83846802169633 25.289049816437114 25.54063627742736 25.331845884439197 94-95 23.72605198672228 25.235526431542045 25.54797795463199 25.490443627103687 96-97 23.595055510084155 25.235652374656343 25.54991710214275 25.619375013116752 98-99 23.49975205565503 25.070228515043357 25.5124155151048 25.917603914196818 100-101 23.473934087657398 25.131101338535476 25.555759049849147 25.839205523957986 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 19.0 1 18.0 2 30.5 3 47.5 4 42.0 5 46.5 6 77.5 7 163.0 8 261.5 9 287.0 10 257.0 11 216.5 12 217.0 13 240.0 14 265.5 15 325.0 16 372.5 17 415.0 18 483.5 19 533.0 20 592.5 21 671.5 22 774.0 23 940.0 24 1093.0 25 1334.0 26 1729.5 27 2230.0 28 2829.5 29 3562.0 30 4754.5 31 6830.5 32 10353.0 33 14941.0 34 20770.5 35 28524.0 36 38431.0 37 48877.0 38 59306.5 39 69788.5 40 78634.5 41 86529.5 42 96002.5 43 106038.5 44 114871.0 45 123790.5 46 129819.5 47 134503.5 48 140386.5 49 143154.5 50 141858.0 51 140139.5 52 138493.5 53 136269.5 54 133433.0 55 126357.0 56 115176.0 57 103428.5 58 92896.0 59 81148.0 60 66760.5 61 53812.5 62 43500.0 63 33484.0 64 24351.0 65 17703.0 66 13352.5 67 10470.5 68 7954.5 69 5895.0 70 4533.5 71 3340.5 72 2317.0 73 1666.0 74 1256.0 75 904.5 76 618.0 77 396.0 78 236.5 79 129.5 80 90.5 81 64.5 82 39.0 83 23.0 84 13.5 85 8.5 86 7.0 87 5.5 88 3.5 89 5.5 90 4.0 91 0.5 92 1.5 93 1.5 94 0.0 95 0.0 96 1.0 97 1.0 98 0.5 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.16958075179568927 2 1.0072109589924131E-4 3 0.010575715069420337 4 0.006614018630716845 5 0.025616732057040372 6 0.00231658520568255 7 0.0 8 0.0 9 1.0072109589924131E-4 10-11 0.05190493808674235 12-13 3.1895013701426417E-4 14-15 0.005069628493595146 16-17 0.0 18-19 0.0016786849316540219 20-21 4.0288438359696523E-4 22-23 0.0 24-25 6.882608219781488E-4 26-27 0.00307199342492686 28-29 0.00538857863060941 30-31 0.017491896987834904 32-33 0.012187252603808197 34-35 0.010441420274888015 36-37 0.004398154520933536 38-39 0.0 40-41 0.003340583013991503 42-43 0.009837093699492566 44-45 0.007268705754061914 46-47 0.003390943561941124 48-49 0.009115259178881337 50-51 0.0028873380824449174 52-53 0.0022326509590998487 54-55 0.004331007123667375 56-57 0.008410211507586649 58-59 0.01606501479592899 60-61 0.007755524384241581 62-63 0.021973985755351144 64-65 0.04215177863383249 66-67 0.061322360553321416 68-69 0.05086415342911686 70-71 0.06963185096500882 72-73 0.03476556493455479 74-75 0.027966890961356 76-77 0.23065130960926256 78-79 0.08702302685694448 80-81 0.06833926356763523 82-83 0.028235480550420643 84-85 0.05247569096350472 86-87 0.06724811836206011 88-89 0.2953478268752086 90-91 0.29907450742348046 92-93 0.054154375895158736 94-95 0.010072109589924131 96-97 0.015427114521900459 98-99 0.0010407846576254935 100-101 1.8465534248194237E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 2978522.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 64.62892082150431 #Duplication Level Percentage of deduplicated Percentage of total 1 80.97967809380823 52.33629203675639 2 11.026619967727399 14.252770976461449 3 3.3200973458795136 6.43722925459601 4 1.529949963285724 3.955160601522259 5 0.8017618786164582 2.5908502485401814 6 0.5225664527260342 2.0263743538323142 7 0.35702597614394777 1.615194248039924 8 0.26180912433781245 1.3536352933740685 9 0.18217844789742565 1.0596596836092542 >10 0.9617445044110619 10.737109113540368 >50 0.043875028466392164 1.9127048453947102 >100 0.01185987473593065 1.3156172977093594 >500 6.770903460344206E-4 0.28110505601064634 >1k 1.5625161802954618E-4 0.1262969906129592 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 3.3573698633080436E-5 2 0.0 3.3573698633080436E-5 0.0 3.3573698633080436E-5 3.3573698633080436E-5 3 0.0 3.3573698633080436E-5 0.0 3.3573698633080436E-5 3.3573698633080436E-5 4 0.0 3.3573698633080436E-5 0.0 3.3573698633080436E-5 3.3573698633080436E-5 5 0.0 1.0072109589924131E-4 0.0 3.3573698633080436E-5 3.3573698633080436E-5 6 3.3573698633080436E-5 1.0072109589924131E-4 0.0 3.3573698633080436E-5 3.3573698633080436E-5 7 3.3573698633080436E-5 1.0072109589924131E-4 0.0 3.3573698633080436E-5 3.3573698633080436E-5 8 3.3573698633080436E-5 1.0072109589924131E-4 0.0 3.3573698633080436E-5 3.3573698633080436E-5 9 3.3573698633080436E-5 1.0072109589924131E-4 0.0 1.0072109589924131E-4 3.3573698633080436E-5 10-11 3.3573698633080436E-5 1.0072109589924131E-4 0.0 1.0072109589924131E-4 3.3573698633080436E-5 12-13 3.3573698633080436E-5 1.0072109589924131E-4 0.0 1.3429479453232174E-4 6.714739726616087E-5 14-15 3.3573698633080436E-5 1.0072109589924131E-4 0.0 1.6786849316540218E-4 1.1750794521578152E-4 16-17 3.3573698633080436E-5 1.0072109589924131E-4 0.0 2.1822904111502283E-4 2.3501589043156305E-4 18-19 3.3573698633080436E-5 1.0072109589924131E-4 0.0 2.685895890646435E-4 2.3501589043156305E-4 20-21 3.3573698633080436E-5 1.0072109589924131E-4 0.0 3.189501370142641E-4 2.8537643838118373E-4 22-23 3.3573698633080436E-5 1.0072109589924131E-4 0.0 3.693106849638848E-4 3.525238356473446E-4 24-25 3.3573698633080436E-5 1.0072109589924131E-4 0.0 4.1967123291350547E-4 3.693106849638848E-4 26-27 3.3573698633080436E-5 1.0072109589924131E-4 0.0 6.88260821978149E-4 4.1967123291350547E-4 28-29 3.3573698633080436E-5 1.0072109589924131E-4 0.0 0.0016451112330209414 4.5324493154658585E-4 30-31 3.3573698633080436E-5 1.0072109589924131E-4 0.0 0.007923392877406982 5.036054794962065E-4 32-33 3.3573698633080436E-5 1.0072109589924131E-4 0.0 0.02481096328984644 5.37179178129287E-4 34-35 3.3573698633080436E-5 1.0072109589924131E-4 0.0 0.04874901041523279 6.043265753954478E-4 36-37 6.714739726616087E-5 1.0072109589924131E-4 0.0 0.08579758685683705 6.043265753954478E-4 38-39 6.714739726616087E-5 1.0072109589924131E-4 0.0 0.15187062576673935 6.546871233450685E-4 40-41 6.714739726616087E-5 1.0072109589924131E-4 0.0 0.22650495782807717 6.714739726616087E-4 42-43 6.714739726616087E-5 1.0072109589924131E-4 0.0 0.3085758641366423 6.714739726616087E-4 44-45 6.714739726616087E-5 1.0072109589924131E-4 0.0 0.40630890085753946 6.714739726616087E-4 46-47 6.714739726616087E-5 1.0072109589924131E-4 0.0 0.5219367189498685 6.714739726616087E-4 48-49 6.714739726616087E-5 1.0072109589924131E-4 0.0 0.6453032745771226 7.050476712946891E-4 50-51 6.714739726616087E-5 1.0072109589924131E-4 0.0 0.7784565633559195 7.050476712946891E-4 52-53 6.714739726616087E-5 1.1750794521578152E-4 0.0 0.9159576461077004 8.393424658270108E-4 54-55 6.714739726616087E-5 1.3429479453232174E-4 0.0 1.0710849206418485 9.736372603593326E-4 56-57 6.714739726616087E-5 1.3429479453232174E-4 0.0 1.2517282061371378 9.736372603593326E-4 58-59 6.714739726616087E-5 1.3429479453232174E-4 0.0 1.4488226039626366 9.736372603593326E-4 60-61 6.714739726616087E-5 1.3429479453232174E-4 0.0 1.6615287716525176 9.736372603593326E-4 62-63 6.714739726616087E-5 1.3429479453232174E-4 0.0 1.8763332955069663 0.001007210958992413 64-65 6.714739726616087E-5 1.3429479453232174E-4 0.0 2.109871943198674 0.0010239978083089532 66-67 6.714739726616087E-5 1.3429479453232174E-4 0.0 2.3868549569215873 0.0010407846576254935 68-69 6.714739726616087E-5 1.3429479453232174E-4 0.0 2.684032550372299 0.0010407846576254935 70-71 6.714739726616087E-5 1.3429479453232174E-4 0.0 3.0070786786197985 0.0010407846576254935 72-73 6.714739726616087E-5 1.3429479453232174E-4 0.0 3.3402472770051723 0.0011415057535247347 74-75 6.714739726616087E-5 1.3429479453232174E-4 0.0 3.689229087446727 0.0011415057535247347 76-77 6.714739726616087E-5 1.3429479453232174E-4 0.0 4.078516123097295 0.0011415057535247347 78-79 6.714739726616087E-5 1.3429479453232174E-4 0.0 4.509669560943314 0.0011415057535247347 80-81 6.714739726616087E-5 1.6786849316540218E-4 0.0 4.964106358791374 0.0011415057535247347 82-83 6.714739726616087E-5 1.6786849316540218E-4 0.0 5.441238976915397 0.0012254400001074357 84-85 6.714739726616087E-5 1.6786849316540218E-4 0.0 5.9409331205208495 0.001242226849423976 86-87 6.714739726616087E-5 1.6786849316540218E-4 0.0 6.476702203307546 0.001242226849423976 88-89 6.714739726616087E-5 1.6786849316540218E-4 0.0 7.047975472398727 0.001242226849423976 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 1820 0.0 48.57861 1 GTATCAA 3645 0.0 42.643585 1 TCAACGC 4450 0.0 34.238403 4 CAACGCA 4520 0.0 33.628567 5 ATCAACG 4605 0.0 33.293236 3 TATCAAC 4655 0.0 32.73114 2 AACGCAG 4950 0.0 30.797565 6 GTACATG 8575 0.0 27.383965 1 TACATGG 9030 0.0 25.440956 2 ACGCAGA 6360 0.0 23.44631 7 ACATGGG 9405 0.0 23.316656 3 CGCAGAG 6585 0.0 22.428827 8 CATGGGG 8100 0.0 22.032885 4 ATGGGGG 4555 0.0 18.666437 5 GCAGAGT 7740 0.0 18.284561 9 AGAGTAC 6450 0.0 17.670986 10-11 GTATAAA 1005 0.0 17.500046 1 GTATAGC 1040 0.0 17.36816 1 CGTACAC 450 7.2759576E-12 16.876818 3 GAGTACA 6485 0.0 16.052313 1 >>END_MODULE