##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921701_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3505354 Sequences flagged as poor quality 0 Sequence length 101 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.462123654272865 33.0 31.0 34.0 29.0 34.0 2 31.602240458452982 34.0 31.0 34.0 29.0 34.0 3 31.6743039362073 34.0 31.0 34.0 28.0 34.0 4 35.15200005477335 37.0 35.0 37.0 33.0 37.0 5 34.9049884833315 37.0 35.0 37.0 32.0 37.0 6 34.87752107205149 37.0 35.0 37.0 32.0 37.0 7 34.77087135849903 37.0 35.0 37.0 32.0 37.0 8 34.711032323696834 37.0 35.0 37.0 32.0 37.0 9 36.31400851383341 39.0 37.0 39.0 32.0 39.0 10-11 36.20804988597443 39.0 37.0 39.0 32.0 39.0 12-13 36.134247639468086 39.0 37.0 39.0 32.0 39.0 14-15 37.38909151543611 40.0 38.0 41.0 32.0 41.0 16-17 37.357422531362026 40.0 38.0 41.0 32.0 41.0 18-19 37.30560294338318 40.0 38.0 41.0 31.0 41.0 20-21 37.2461956766706 40.0 38.0 41.0 31.0 41.0 22-23 37.15337709115827 40.0 38.0 41.0 31.0 41.0 24-25 37.07014854990395 40.0 37.5 41.0 31.0 41.0 26-27 36.944557382792155 40.0 37.0 41.0 30.0 41.0 28-29 36.82521565582249 40.0 37.0 41.0 30.0 41.0 30-31 36.67566428383553 40.0 37.0 41.0 30.0 41.0 32-33 36.6358143856512 40.0 37.0 41.0 30.0 41.0 34-35 36.77998712826151 40.0 37.0 41.0 30.0 41.0 36-37 36.78078447996978 40.0 37.0 41.0 30.0 41.0 38-39 36.679838184674075 40.0 37.0 41.0 30.0 41.0 40-41 36.602515181063026 40.0 37.0 41.0 30.0 41.0 42-43 36.486347598559234 40.0 37.0 41.0 30.0 41.0 44-45 36.360973813201184 40.0 36.0 41.0 29.5 41.0 46-47 36.20760428190705 40.0 36.0 41.0 29.0 41.0 48-49 36.06548397109108 40.0 36.0 41.0 28.5 41.0 50-51 35.90320135997676 40.0 35.0 41.0 28.0 41.0 52-53 35.7217596282715 39.0 35.0 41.0 28.0 41.0 54-55 35.49761764432351 39.0 35.0 41.0 27.5 41.0 56-57 35.26092386104228 39.0 35.0 41.0 27.0 41.0 58-59 35.00750380703347 38.5 35.0 40.5 26.5 41.0 60-61 34.72068170575639 38.0 34.5 40.0 26.0 41.0 62-63 34.40418057634122 37.0 34.0 40.0 26.0 41.0 64-65 34.057375945482256 37.0 34.0 40.0 26.0 41.0 66-67 33.68739562395125 36.0 34.0 39.0 25.5 41.0 68-69 33.30862546264942 36.0 34.0 39.0 25.0 40.5 70-71 32.89874817208191 35.0 33.0 38.5 24.0 40.0 72-73 32.5299210864295 35.0 33.0 37.0 23.0 39.5 74-75 32.12432125257534 35.0 33.0 37.0 22.5 39.0 76-77 29.429008596564 33.0 29.0 34.5 17.5 36.0 78-79 31.00178641016 34.5 31.5 35.5 19.5 37.0 80-81 31.186823927055585 35.0 32.0 35.0 20.0 37.0 82-83 31.026861766315186 35.0 32.0 35.0 20.0 36.5 84-85 30.84708249152582 35.0 32.0 35.0 19.0 36.0 86-87 30.65569040958488 35.0 32.0 35.0 18.0 36.0 88-89 30.402570610557447 35.0 32.0 35.0 13.0 35.5 90-91 30.21959137365299 34.5 32.0 35.0 9.0 35.0 92-93 30.073809378453646 34.0 31.0 35.0 6.5 35.0 94-95 29.981617833748032 34.0 31.0 35.0 2.0 35.0 96-97 29.783732684345146 34.0 31.0 35.0 2.0 35.0 98-99 29.586970531364308 34.0 31.0 35.0 2.0 35.0 100-101 28.472274840144532 33.0 29.0 34.5 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 58033.0 3 20311.0 4 11449.0 5 8203.0 6 7161.0 7 7365.0 8 7660.0 9 8287.0 10 9219.0 11 10036.0 12 10336.0 13 11181.0 14 11747.0 15 12404.0 16 13333.0 17 14074.0 18 13948.0 19 12831.0 20 12316.0 21 12180.0 22 13041.0 23 15056.0 24 17583.0 25 21279.0 26 25583.0 27 31351.0 28 37853.0 29 45861.0 30 56517.0 31 69676.0 32 88722.0 33 116892.0 34 166706.0 35 251736.0 36 451068.0 37 875915.0 38 868976.0 39 79465.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.79720172012801 18.580531486292212 13.101845488521668 26.52042130505811 2 15.65483741856379 20.649658194001113 36.429418908406035 27.266085479029062 3 18.496983004453384 23.89758905693247 28.173366044912708 29.432061893701444 4 13.57255629852497 16.573308904544565 34.495945113966464 35.358189682964 5 15.044470259042933 36.44306982183076 33.65883126069881 14.853628658427493 6 34.624738644050105 34.54266239158845 16.684644323401546 14.1479546409599 7 30.13222059740614 30.708538994920342 20.32810380920158 18.831136598471936 8 27.540214198052464 33.67037965352429 19.46091607295583 19.328490075467414 9 26.881593128682578 15.500488681029076 18.534675813056257 39.08324237723208 10-11 26.152484926326302 24.81298654964501 27.277576795461844 21.756951728566843 12-13 26.9111412872931 21.9701797828456 26.93644553738011 24.182233392481187 14-15 23.97227299240024 23.545004678083785 24.093179954378876 28.3895423751371 16-17 24.479228699758814 26.523031129385384 24.83709560248346 24.160644568372348 18-19 24.428996397595355 26.094603953016826 25.82750822148477 23.648891427903052 20-21 25.00480694619415 25.320068444067118 25.6955522767523 23.979572332986436 22-23 24.78119539156322 25.02716202517093 25.546539029515852 24.64510355375 24-25 24.64400279631344 25.204848788109647 25.589734146247878 24.56141426932903 26-27 24.424859019459554 25.42752043993175 25.53806824065814 24.60955229995056 28-29 24.607330813821957 25.529980369037 25.3603455688543 24.50234324828675 30-31 24.848974223079466 25.378978581409832 25.195472186933145 24.576575008577564 32-33 24.612966283918546 25.387411751833366 25.169178131730195 24.830443832517894 34-35 24.8370825065371 25.402703855497656 25.232846266542463 24.527367371422784 36-37 24.887282203026693 25.242253397367463 25.301821800323747 24.568642599282096 38-39 24.794057889730965 25.356312087167233 25.29969868949042 24.549931333611383 40-41 24.962720088416223 25.18725541967324 25.33158224018391 24.51844225172663 42-43 24.791934674434934 25.171874469512233 25.203043969108386 24.833146886944448 44-45 24.73072954156478 25.199401218617684 25.28292192076788 24.786947319049652 46-47 24.807059846537978 25.21291030094442 25.153927043916063 24.82610280860154 48-49 24.64379201978862 25.23391283136165 25.249875536548032 24.872419612301698 50-51 24.64421418156495 25.36798174405445 25.245737203050606 24.74206687132999 52-53 24.922659663148742 25.14097280507211 25.201567004803604 24.734800526975544 54-55 24.536846051273447 25.10601374070454 25.4260662568762 24.93107395114581 56-57 24.552153780161746 25.190926373609283 25.373661068936627 24.88325877729234 58-59 24.601936282128886 25.094773339321296 25.308936191824404 24.994354186725413 60-61 24.508901595445725 25.14287743980061 25.478473950258795 24.86974701449487 62-63 24.550440720892748 25.212128406131484 25.320785630538616 24.916645242437152 64-65 24.3922747130201 25.009164663568733 25.326463938172587 25.272096685238576 66-67 24.36623461293855 25.158237965237028 25.30318833728964 25.172339084534784 68-69 24.5137049700264 25.08149514368576 25.275582168311693 25.12921771797614 70-71 24.372055792268164 24.939033676819182 25.322152688934224 25.366757841978433 72-73 24.34958323529609 25.05863328686998 25.270436538144065 25.321346939689864 74-75 24.363238737445013 25.08372608582814 25.171172459115006 25.381862717611845 76-77 24.236134968825205 24.843418337564458 25.383078043282865 25.537368650327473 78-79 24.20514242265994 24.925628655217043 25.36576082906454 25.503468093058473 80-81 24.293170909741775 25.018330604022843 25.23839776604283 25.45010072019255 82-83 24.23784861654851 24.96901400251769 25.32355345293232 25.469583928001484 84-85 24.073772262846223 24.90811433810213 25.351837099572744 25.666276299478895 86-87 24.054367769070442 24.990814808555488 25.309677266487025 25.64514015588704 88-89 23.961367267183796 24.832979996798297 25.309716079942994 25.895936656074912 90-91 23.843899747942032 24.879829668444625 25.38477540115674 25.8914951824566 92-93 23.898571770070323 24.735672209992256 25.436964146183954 25.928791873753465 94-95 23.711910084918784 24.683837014364638 25.469829352159035 26.134423548557546 96-97 23.697080021227908 24.59417316723826 25.520254963165012 26.188491848368816 98-99 23.517968667090404 24.495082337609876 25.464279478872708 26.522669516427012 100-101 23.4873499666866 24.518246626973966 25.565889135353665 26.428514270985765 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 26.0 1 19.5 2 28.0 3 46.5 4 49.0 5 49.0 6 102.5 7 220.5 8 325.0 9 342.5 10 280.5 11 244.0 12 247.0 13 273.0 14 311.5 15 349.0 16 385.5 17 420.0 18 457.5 19 502.5 20 583.5 21 684.5 22 771.5 23 921.0 24 1155.0 25 1445.5 26 1749.0 27 2185.5 28 2748.0 29 3363.0 30 4279.0 31 5680.0 32 8307.5 33 11604.0 34 16060.0 35 23279.0 36 33370.0 37 45155.5 38 57511.5 39 69932.5 40 82085.5 41 94509.0 42 107651.0 43 120187.0 44 131412.5 45 142619.5 46 152404.0 47 160557.5 48 168003.5 49 172923.5 50 173241.0 51 172184.5 52 171023.5 53 169724.5 54 166912.0 55 157911.5 56 144749.5 57 129624.0 58 116645.0 59 102104.0 60 84137.0 61 69446.5 62 56819.5 63 43606.5 64 31326.5 65 22730.5 66 16954.5 67 12980.0 68 9899.0 69 7332.5 70 5415.0 71 3801.0 72 2653.5 73 1984.5 74 1504.5 75 1071.5 76 716.5 77 429.5 78 229.5 79 135.5 80 91.5 81 49.0 82 31.5 83 20.0 84 13.5 85 11.0 86 11.5 87 7.5 88 3.5 89 2.5 90 2.0 91 1.5 92 1.0 93 2.0 94 2.5 95 1.5 96 1.5 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.1668019834801278 2 8.55833676142267E-5 3 0.01075497653018782 4 0.005705557840948446 5 0.025018871132558934 6 0.0021966397687651516 7 0.0 8 0.0 9 0.0 10-11 0.04932454753499932 12-13 3.9938904886639123E-4 14-15 0.00512073816225123 16-17 1.4263894602371115E-5 18-19 0.0016118200900679359 20-21 2.852778920474223E-4 22-23 1.4263894602371115E-5 24-25 6.989308355161847E-4 26-27 0.002367806503993605 28-29 0.005049418689239375 30-31 0.016303631530510187 32-33 0.01125421284127081 34-35 0.01024147632450246 36-37 0.003993890488663912 38-39 0.0 40-41 0.003280695758545357 42-43 0.009271531491541226 44-45 0.006704030463114424 46-47 0.003480390282978552 48-49 0.00881508686426535 50-51 0.0024248620824030894 52-53 0.0019398896659224717 54-55 0.00422211280230185 56-57 0.007773822558292258 58-59 0.015533381221982143 60-61 0.0071890028795950425 62-63 0.021538480849580387 64-65 0.04012433551646995 66-67 0.0595089682810923 68-69 0.050522714681598496 70-71 0.06833831903996002 72-73 0.03304944379369387 74-75 0.026259829962965227 76-77 0.22986266151721052 78-79 0.08549778424661247 80-81 0.06654106832006126 82-83 0.02705860806069801 84-85 0.051777937406607154 86-87 0.06940811113513784 88-89 0.29493454869322755 90-91 0.3001979258015025 92-93 0.05396031328076993 94-95 0.010212948535297719 96-97 0.01523383943533235 98-99 8.558336761422669E-4 100-101 2.1395841903556673E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 3505354.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 58.61009697322345 #Duplication Level Percentage of deduplicated Percentage of total 1 75.8218269950869 44.43924632869014 2 13.238903125155307 15.51866791968927 3 4.605987862364415 8.098721858120054 4 2.080669400689711 4.877929413745707 5 1.15988042710197 3.3990352154895147 6 0.7284380819178194 2.5616295972115366 7 0.4650287961977468 1.9078767988343908 8 0.3301534748198384 1.548026174018993 9 0.26197749214119703 1.3819073597277698 >10 1.2437637397806918 12.53631174534775 >50 0.049926800176957505 1.9640552138998415 >100 0.012272511043741764 1.1484882978346607 >500 8.784701451207434E-4 0.35068517819910544 >1k 2.9282337871662956E-4 0.2674188991912792 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.55833676142267E-5 2 0.0 0.0 0.0 0.0 8.55833676142267E-5 3 0.0 0.0 0.0 0.0 8.55833676142267E-5 4 0.0 0.0 0.0 0.0 1.1411115681896892E-4 5 0.0 0.0 0.0 0.0 1.1411115681896892E-4 6 0.0 0.0 0.0 0.0 1.4263894602371116E-4 7 0.0 0.0 0.0 0.0 1.711667352284534E-4 8 0.0 0.0 0.0 0.0 1.711667352284534E-4 9 0.0 0.0 0.0 0.0 1.711667352284534E-4 10-11 0.0 0.0 0.0 0.0 1.9969452443319562E-4 12-13 0.0 0.0 0.0 4.279168380711335E-5 2.567501028426801E-4 14-15 0.0 0.0 0.0 7.131947301185558E-5 2.567501028426801E-4 16-17 0.0 0.0 0.0 8.55833676142267E-5 2.567501028426801E-4 18-19 0.0 0.0 0.0 8.55833676142267E-5 2.567501028426801E-4 20-21 0.0 0.0 0.0 9.984726221659781E-5 2.852778920474223E-4 22-23 0.0 0.0 0.0 1.711667352284534E-4 3.1380568125216455E-4 24-25 0.0 0.0 0.0 3.70861259661649E-4 3.70861259661649E-4 26-27 0.0 0.0 0.0 6.846669409138136E-4 4.1365294346876235E-4 28-29 0.0 0.0 0.0 0.002210903663367523 4.421807326735046E-4 30-31 0.0 0.0 0.0 0.00894346191568669 5.135002056853602E-4 32-33 0.0 0.0 0.0 0.026088663227736772 5.135002056853602E-4 34-35 0.0 0.0 0.0 0.05244834045291859 5.420279948901024E-4 36-37 0.0 0.0 0.0 0.0949119546841774 5.705557840948447E-4 38-39 0.0 0.0 0.0 0.16556102464972156 6.561391517090713E-4 40-41 0.0 0.0 0.0 0.2497322666983135 7.41722519323298E-4 42-43 0.0 0.0 0.0 0.3406788586830317 7.702503085280402E-4 44-45 0.0 0.0 0.0 0.45568864086195005 7.702503085280402E-4 46-47 0.0 0.0 0.0 0.5890132637103129 7.845142031304114E-4 48-49 0.0 0.0 0.0 0.7294127782814517 7.987780977327825E-4 50-51 0.0 0.0 0.0 0.8818224921077871 7.987780977327825E-4 52-53 0.0 0.0 0.0 1.0395669025154093 8.273058869375247E-4 54-55 0.0 0.0 0.0 1.2197912108163682 8.558336761422669E-4 56-57 0.0 0.0 0.0 1.4313390316641343 8.558336761422669E-4 58-59 0.0 0.0 0.0 1.6580351085796186 8.558336761422669E-4 60-61 0.0 0.0 0.0 1.895771439917338 8.558336761422669E-4 62-63 0.0 0.0 0.0 2.1425082887491533 9.128892545517514E-4 64-65 0.0 2.852778920474223E-5 0.0 2.4146633977623946 9.414170437564936E-4 66-67 0.0 2.852778920474223E-5 0.0 2.7346168175881806 9.414170437564936E-4 68-69 0.0 4.279168380711335E-5 0.0 3.0818285399990986 9.414170437564936E-4 70-71 0.0 7.131947301185558E-5 0.0 3.4439602961640965 9.699448329612358E-4 72-73 1.4263894602371115E-5 8.55833676142267E-5 0.0 3.8245495319445624 0.0010127365167683492 74-75 2.852778920474223E-5 8.55833676142267E-5 0.0 4.227205012674897 0.0010270004113707204 76-77 4.279168380711335E-5 8.55833676142267E-5 0.0 4.677116776222887 0.0010270004113707204 78-79 5.705557840948446E-5 8.55833676142267E-5 0.0 5.169363778950713 0.0010270004113707204 80-81 5.705557840948446E-5 8.55833676142267E-5 0.0 5.685930721975584 0.0010412643059730916 82-83 5.705557840948446E-5 8.55833676142267E-5 0.0 6.223807923536397 0.0011268476735873181 84-85 5.705557840948446E-5 8.55833676142267E-5 0.0 6.79249513743833 0.0011411115681896893 86-87 5.705557840948446E-5 8.55833676142267E-5 0.0 7.393989308925717 0.0011411115681896893 88-89 5.705557840948446E-5 8.55833676142267E-5 0.0 8.045934875621692 0.0011411115681896893 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 3905 0.0 41.516754 1 GGTATCA 2365 0.0 40.607876 1 TCAACGC 4785 0.0 33.42672 4 CAACGCA 5025 0.0 31.856585 5 ATCAACG 5065 0.0 31.577944 3 TATCAAC 5155 0.0 31.118698 2 AACGCAG 5450 0.0 29.543295 6 GTACATG 8890 0.0 26.793287 1 TACATGG 9200 0.0 25.639051 2 ACGCAGA 6645 0.0 23.586435 7 ACATGGG 9675 0.0 23.104858 3 CGCAGAG 7095 0.0 21.621881 8 GTATAGT 740 0.0 20.5593 1 CATGGGG 8280 0.0 20.17707 4 GTATACG 270 4.8339825E-7 17.60866 1 TAAGGTG 1690 0.0 17.426506 5 GTATAGA 935 0.0 17.288502 1 GAGTACA 6935 0.0 17.27604 1 AGAGTAC 6585 0.0 17.093937 10-11 AGTACAT 6525 0.0 17.093096 2 >>END_MODULE