##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921700_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3336315 Sequences flagged as poor quality 0 Sequence length 101 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.605152391186085 31.0 31.0 34.0 27.0 34.0 2 30.66145013285616 31.0 31.0 34.0 27.0 34.0 3 30.72722389822304 33.0 31.0 34.0 27.0 34.0 4 34.195367343910874 37.0 35.0 37.0 30.0 37.0 5 34.194168116619686 37.0 35.0 37.0 30.0 37.0 6 34.2375686948025 37.0 35.0 37.0 30.0 37.0 7 34.16233449179709 37.0 35.0 37.0 30.0 37.0 8 34.13058029592529 37.0 35.0 37.0 30.0 37.0 9 35.702149527247876 39.0 37.0 39.0 30.0 39.0 10-11 35.6048514603687 39.0 37.0 39.0 30.0 39.0 12-13 35.49964376864894 39.0 35.0 39.0 30.0 39.0 14-15 36.65128682393599 40.0 37.0 41.0 30.0 41.0 16-17 36.589198861618286 40.0 37.0 41.0 30.0 41.0 18-19 36.5519048710928 40.0 37.0 41.0 29.5 41.0 20-21 36.4735570532159 40.0 37.0 41.0 29.0 41.0 22-23 36.37487527406735 40.0 37.0 41.0 29.0 41.0 24-25 36.26411789654154 40.0 36.0 41.0 28.0 41.0 26-27 36.12099531968654 40.0 36.0 41.0 27.5 41.0 28-29 35.980014477050275 40.0 36.0 41.0 27.0 41.0 30-31 35.835827851986394 40.0 36.0 41.0 27.0 41.0 32-33 35.66227709314019 39.5 35.5 41.0 26.5 41.0 34-35 35.49662381999302 39.0 35.0 41.0 25.5 41.0 36-37 35.47110344796579 39.0 35.0 41.0 25.5 41.0 38-39 35.65989287582258 40.0 35.5 41.0 26.5 41.0 40-41 35.72797832338973 40.0 35.5 41.0 26.5 41.0 42-43 35.57118107852526 40.0 35.0 41.0 26.0 41.0 44-45 35.45928067343761 40.0 35.0 41.0 25.5 41.0 46-47 35.30382667703739 40.0 35.0 41.0 24.5 41.0 48-49 35.14375650980198 39.0 35.0 41.0 24.0 41.0 50-51 33.43094372084171 37.0 32.5 39.5 22.0 40.0 52-53 33.55685689151055 37.5 33.5 39.5 22.5 40.0 54-55 34.476824580412824 39.0 34.0 40.5 23.0 41.0 56-57 34.49230573252226 39.0 34.0 41.0 23.0 41.0 58-59 34.29549428036621 38.0 34.0 41.0 22.0 41.0 60-61 34.03225969370398 38.0 34.0 40.0 22.0 41.0 62-63 33.7288348072649 37.0 34.0 40.0 21.0 41.0 64-65 33.432018409532674 37.0 34.0 40.0 20.0 41.0 66-67 33.08309197422905 36.0 33.0 39.0 19.5 41.0 68-69 32.71484107465872 36.0 33.0 39.0 18.0 41.0 70-71 32.29514374392106 35.0 33.0 38.5 15.5 40.5 72-73 31.927333000630938 35.0 32.5 37.0 12.5 39.5 74-75 31.525257507159843 35.0 32.0 37.0 9.0 39.0 76-77 31.148959555677447 35.0 32.0 36.5 7.0 39.0 78-79 30.809324209494605 35.0 32.0 36.0 2.0 37.5 80-81 30.50188516372105 35.0 31.5 35.5 2.0 37.0 82-83 30.200235289533513 35.0 31.0 35.0 2.0 37.0 84-85 29.950397669284825 35.0 31.0 35.0 2.0 36.0 86-87 29.727543412417592 35.0 31.0 35.0 2.0 36.0 88-89 29.52229870380944 35.0 31.0 35.0 2.0 36.0 90-91 29.308121984884522 34.5 31.0 35.0 2.0 35.0 92-93 29.12412661873954 34.0 30.5 35.0 2.0 35.0 94-95 28.898029562556292 34.0 30.0 35.0 2.0 35.0 96-97 28.663162051544894 34.0 30.0 35.0 2.0 35.0 98-99 28.401593224860363 34.0 30.0 35.0 2.0 35.0 100-101 27.32448974392406 33.0 27.5 35.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 94040.0 3 16937.0 4 12020.0 5 9508.0 6 8762.0 7 8925.0 8 9696.0 9 10290.0 10 11407.0 11 12171.0 12 12283.0 13 12384.0 14 13095.0 15 13639.0 16 13589.0 17 14159.0 18 13730.0 19 13204.0 20 13752.0 21 14660.0 22 15905.0 23 18282.0 24 21632.0 25 25461.0 26 30619.0 27 36344.0 28 42957.0 29 50959.0 30 60566.0 31 73993.0 32 92416.0 33 120499.0 34 168898.0 35 242709.0 36 402000.0 37 734613.0 38 759960.0 39 110244.0 40 7.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.86448763637683 17.36596390555596 12.666644473894854 25.102903984172354 2 16.386213574293624 19.705456761890137 38.02821548684193 25.88011417697431 3 19.48209520747147 23.605908593532536 28.68615201136462 28.225844187631377 4 13.973655439058518 15.675778631300627 35.83805128835792 34.51251464128294 5 15.032472528148205 36.71826658816352 33.54989683714906 14.699364046539207 6 33.99336263621629 34.2320943008061 17.361733328577085 14.41280973440053 7 29.700801535802313 31.186211833519895 20.609194788968075 18.50379184170972 8 27.353689147879194 33.443255651231276 20.09683756489289 19.106217635996643 9 27.447609044409116 15.504341632914398 18.854748938272316 38.193300384404175 10-11 26.058818327480278 24.780903903485303 27.48694866249084 21.67332910654358 12-13 26.777209305044707 22.148461173742046 27.08423554707918 23.990093974134066 14-15 24.037873221291296 23.562306510541255 24.4328394705977 27.96698079756975 16-17 24.34689678909535 26.533481602118375 25.166577521508763 23.953044087277505 18-19 24.335521246458498 26.157429924254632 26.218266629036542 23.28878220025033 20-21 24.90818820324089 25.31715167278845 26.045979947404206 23.728680176566453 22-23 24.75183978137613 25.102944699663542 25.730492830227377 24.414722688732947 24-25 24.573668443803992 25.256248690084583 25.7283429566204 24.441739909491027 26-27 24.367970780542127 25.440705986999884 25.761639148509307 24.42968408394868 28-29 24.488875206202053 25.75405576920598 25.406731022591323 24.350338002000644 30-31 24.92784212545016 25.394640660004924 25.32926128652278 24.348255928022137 32-33 24.524877586715967 25.456777282012926 25.329680294121616 24.688664837149492 34-35 24.834790579364892 25.53153797744672 25.397790773151463 24.235880670036924 36-37 24.88884346246095 25.436038756869166 25.387122087255108 24.287995693414775 38-39 24.72416731636358 25.477021411672247 25.425045658630808 24.37376561333337 40-41 24.92814947486959 25.265952225339312 25.440473655207104 24.365424644584 42-43 24.64309945199931 25.289294365730818 25.33254729878748 24.735058883482395 44-45 24.548696123107533 25.284010781010497 25.526998032853065 24.6402950630289 46-47 24.7311865102264 25.22361947995498 25.293025102876825 24.752168906941794 48-49 24.432422169606202 25.316318227815813 25.493217605461066 24.758041997116916 50-51 24.535478015362084 25.348835497795836 25.577264680318546 24.53842180652353 52-53 24.70270751743034 25.201633465770414 25.494641307601757 24.60101770919749 54-55 24.198744329958846 25.034771245756854 25.83182132235874 24.934663101925562 56-57 24.297554823130188 25.135284486072162 25.740033588493937 24.827127102303713 58-59 24.475780896401186 25.070208083314444 25.642147653063386 24.811863367220983 60-61 24.518291500361066 25.063053288948783 25.796182506240733 24.622472704449414 62-63 24.49104750083137 25.020419983255465 25.81697206269919 24.67156045321398 64-65 24.247547499915886 24.85245646541987 25.80286032885851 25.097135705805734 66-67 24.26537812856673 25.061652498745474 25.660837134217328 25.012132238470468 68-69 24.332839707909923 24.976570314588585 25.70156888778082 24.989021089720676 70-71 24.17636993347404 24.816069192524605 25.810940004691567 25.196620869309783 72-73 24.16111344080918 24.988630205623558 25.69900955122806 25.151246802339205 74-75 24.134154433620132 24.96438150583849 25.787098880784757 25.11436517975662 76-77 24.04161974650648 24.63268610795807 25.92949976225784 25.39619438327761 78-79 24.001071912307477 24.728202784899075 26.016044736716797 25.254680566076647 80-81 24.186793120362115 24.81965250272104 25.765230892419467 25.228323484497377 82-83 24.068020425056297 24.854901878305967 25.879564878397606 25.197512818240135 84-85 24.034143605277016 24.829463738755724 25.932417617578764 25.2039750383885 86-87 23.91165069929198 24.937787790630413 25.88649956742193 25.264061942655687 88-89 23.868841690946812 24.616469353080166 26.049104362733882 25.46558459323914 90-91 23.828309527501414 24.593975640040917 26.10727769704269 25.470437135414976 92-93 24.00229452389756 24.454212964931436 26.138837025550615 25.40465548562039 94-95 23.842951831259537 24.352157147332385 26.265068930001732 25.539822091406343 96-97 23.738941290985853 24.32137639925219 26.316279002674914 25.623403307087038 98-99 23.625590515807538 24.18460663781687 26.29452213482076 25.895280711554836 100-101 23.78006882146583 24.099954456603875 26.4053879144866 25.714588807443693 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 54.0 1 48.0 2 71.0 3 104.5 4 99.5 5 106.5 6 168.0 7 313.5 8 487.5 9 514.5 10 438.0 11 436.0 12 499.5 13 551.0 14 632.5 15 752.5 16 851.5 17 936.5 18 1062.0 19 1181.0 20 1244.0 21 1358.0 22 1472.5 23 1538.5 24 1608.5 25 1699.5 26 1962.5 27 2314.5 28 2744.0 29 3364.5 30 4371.5 31 6263.5 32 9833.0 33 14651.5 34 20808.0 35 29182.5 36 40450.5 37 52106.0 38 63046.5 39 73704.5 40 83596.0 41 92873.0 42 102758.5 43 114242.0 44 124587.0 45 135119.5 46 143207.0 47 149351.0 48 155919.0 49 159952.0 50 160464.0 51 158806.0 52 156794.5 53 154722.5 54 151937.0 55 144980.0 56 133517.0 57 119928.5 58 107833.0 59 94067.0 60 76628.5 61 62349.5 62 51546.5 63 39705.5 64 28623.5 65 21149.5 66 16213.5 67 12850.0 68 10074.5 69 7637.5 70 5756.0 71 4162.0 72 2961.5 73 2270.0 74 1741.0 75 1322.0 76 975.5 77 678.5 78 469.0 79 313.5 80 217.5 81 168.5 82 133.5 83 100.0 84 82.5 85 79.0 86 68.5 87 59.0 88 61.0 89 48.0 90 36.0 91 34.5 92 30.5 93 22.5 94 16.5 95 17.5 96 18.0 97 13.0 98 6.5 99 6.0 100 7.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.05682916631073504 2 0.07622181958238355 3 0.07370407170785731 4 0.07253511733754156 5 0.06791924623424346 6 0.010550562521824227 7 0.014057425632771486 8 0.01876321630301695 9 0.007283484922736613 10-11 0.013487935042104836 12-13 0.02306436892199927 14-15 0.04035889896487592 16-17 0.027905038942665782 18-19 0.010056004903613717 20-21 0.02059158083094672 22-23 0.038125896385683006 24-25 0.03524847024336731 26-27 0.021865441362701063 28-29 0.011629597325192614 30-31 0.012004262187473306 32-33 0.008392492915087455 34-35 0.00511042872150861 36-37 8.692224804912007E-4 38-39 0.004316139213473548 40-41 0.0014536996656490768 42-43 0.24628969386883431 44-45 0.21364889106694063 46-47 0.21982336799732638 48-49 0.2273915982153963 50-51 0.2180399632528703 52-53 0.2267321880577823 54-55 0.22225119630490528 56-57 0.22469401120697535 58-59 0.234285431681361 60-61 0.23917106148550124 62-63 0.22383977532097538 64-65 0.22380980213199292 66-67 0.22103728215111582 68-69 0.21595682661858967 70-71 0.20795398516027414 72-73 0.21937377016258958 74-75 0.21838465492616854 76-77 0.21215023161781787 78-79 0.23032897073567696 80-81 0.2424081658956064 82-83 0.24128417130876428 84-85 0.23510969437837856 86-87 0.257529639737255 88-89 0.2494218921175009 90-91 0.25654052450083403 92-93 0.2515200153462728 94-95 0.2542475755436762 96-97 0.26178583257276367 98-99 0.25489199910679894 100-101 0.26135122133251804 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 3336315.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 60.15492619803471 #Duplication Level Percentage of deduplicated Percentage of total 1 79.38017277314198 47.751084347555995 2 11.443413321022627 13.767553675594469 3 3.685469716949821 6.650974764846252 4 1.685862980125987 4.056518525979104 5 0.9519041973495709 2.863086336958145 6 0.6152361318538772 2.2205690463620598 7 0.41108100948467263 1.7309983450874862 8 0.2903778099089927 1.3974124579697926 9 0.22660879553085955 1.2268471833885957 >10 1.2267074445527444 12.997948819655738 >50 0.061653721415986074 2.4911137486379014 >100 0.019964147747356165 2.043796019617453 >500 0.0012483475138462688 0.5238875429097494 >1k 2.9960340174512237E-4 0.27820918543722367 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.9973188982455193E-5 2 0.0 0.0 0.0 0.0 2.9973188982455193E-5 3 0.0 0.0 0.0 0.0 2.9973188982455193E-5 4 0.0 0.0 0.0 0.0 2.9973188982455193E-5 5 0.0 0.0 0.0 0.0 2.9973188982455193E-5 6 0.0 0.0 0.0 0.0 2.9973188982455193E-5 7 0.0 0.0 0.0 0.0 2.9973188982455193E-5 8 0.0 0.0 0.0 0.0 2.9973188982455193E-5 9 0.0 0.0 0.0 1.1989275592982077E-4 2.9973188982455193E-5 10-11 0.0 0.0 0.0 1.1989275592982077E-4 2.9973188982455193E-5 12-13 0.0 0.0 0.0 1.4986594491227598E-4 2.9973188982455193E-5 14-15 0.0 0.0 0.0 1.4986594491227598E-4 7.493297245613799E-5 16-17 0.0 0.0 0.0 1.6485253940350358E-4 1.3487935042104837E-4 18-19 0.0 0.0 0.0 1.7983913389473116E-4 1.4986594491227598E-4 20-21 0.0 0.0 0.0 2.5477210635086914E-4 2.0981232287718636E-4 22-23 0.0 0.0 0.0 4.1962464575437267E-4 2.5477210635086914E-4 24-25 0.0 0.0 0.0 7.343431300701523E-4 2.6975870084209675E-4 26-27 0.0 0.0 0.0 0.001153967775824525 2.9973188982455195E-4 28-29 0.0 0.0 0.0 0.003386970355017437 2.9973188982455195E-4 30-31 0.0 0.0 0.0 0.012573752778139954 3.147184843157795E-4 32-33 0.0 0.0 0.0 0.03767629855094618 3.596782677894623E-4 34-35 0.0 0.0 0.0 0.07509782499554149 3.896514567719175E-4 36-37 0.0 0.0 0.0 0.13535892144476766 4.196246457543727E-4 38-39 0.0 0.0 0.0 0.23990540461557136 4.196246457543727E-4 40-41 0.0 0.0 0.0 0.3609521283212167 4.196246457543727E-4 42-43 0.0 0.0 0.0 0.48962702862289686 4.196246457543727E-4 44-45 0.0 0.0 0.0 0.6430298098351025 4.346112402456003E-4 46-47 0.0 0.0 0.0 0.8202462896938688 4.795710237192831E-4 48-49 0.0 0.0 0.0 1.01180494048074 5.095442127017383E-4 50-51 0.0 0.0 0.0 1.2113364595369442 5.54503996175421E-4 52-53 0.0 0.0 0.0 1.4166827772557449 6.29436968631559E-4 54-55 0.0 0.0 0.0 1.6528864930319829 7.193565355789246E-4 56-57 0.0 0.0 0.0 1.9229599123583954 7.343431300701523E-4 58-59 0.0 0.0 0.0 2.2061466018646323 7.493297245613798E-4 60-61 0.0 0.0 0.0 2.5069425398980614 7.493297245613798E-4 62-63 0.0 0.0 0.0 2.8202522843316653 7.79302913543835E-4 64-65 0.0 0.0 0.0 3.156896156388111 7.79302913543835E-4 66-67 0.0 0.0 0.0 3.545963135974871 7.79302913543835E-4 68-69 0.0 0.0 0.0 3.962260757752191 7.79302913543835E-4 70-71 0.0 0.0 0.0 4.4047999064836505 7.942895080350627E-4 72-73 0.0 0.0 0.0 4.858459108327601 9.141822639648834E-4 74-75 0.0 0.0 0.0 5.334493295746954 9.29168858456111E-4 76-77 0.0 2.9973188982455193E-5 0.0 5.862860671129674 9.441554529473386E-4 78-79 0.0 2.9973188982455193E-5 0.0 6.442766944967726 9.741286419297938E-4 80-81 0.0 2.9973188982455193E-5 0.0 7.042020912293953 9.891152364210215E-4 82-83 0.0 5.9946377964910385E-5 0.0 7.669060025806916 9.891152364210215E-4 84-85 0.0 5.9946377964910385E-5 0.0 8.322535492002405 9.891152364210215E-4 86-87 0.0 5.9946377964910385E-5 0.0 9.015470661493294 0.001004101830912249 88-89 0.0 8.991956694736558E-5 0.0 9.772968080052394 0.0010190884254034766 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 2170 0.0 48.117172 1 GTATCAA 4030 0.0 46.047794 1 TCAACGC 4885 0.0 36.242153 4 TATCAAC 5210 0.0 34.255703 2 ATCAACG 5155 0.0 34.25236 3 CAACGCA 5165 0.0 34.18143 5 AACGCAG 5535 0.0 32.221584 6 GTACATG 9995 0.0 28.0635 1 ACGCAGA 6585 0.0 26.871681 7 TACATGG 10575 0.0 26.302681 2 CGCAGAG 7055 0.0 24.88127 8 ACATGGG 10870 0.0 24.49681 3 CATGGGG 9805 0.0 21.009314 4 ATGGGGG 5835 0.0 19.764374 5 GCAGAGT 8310 0.0 19.696356 9 GAGTACA 7555 0.0 19.09749 1 AGTACAT 7365 0.0 18.689945 2 GCGTAAA 185 1.5320309E-4 17.958227 1 GTATATA 805 0.0 17.68734 1 GTATAGC 1105 0.0 17.609976 1 >>END_MODULE