FastQCFastQC Report
Mon 15 Aug 2016
SRR2921690_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2921690_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2676310
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA18650.043.579231
GTATCAA33000.041.912281
TCAACGC40350.033.04724
CAACGCA41200.032.50675
ATCAACG41600.032.05363
AACGCAG44650.030.2037646
TATCAAC44400.030.1390762
GTACATG71350.026.3126981
TACATGG76050.024.2724822
ACGCAGA55150.024.0218587
ACATGGG81100.022.3514823
CGCAGAG58550.022.302518
GTATATA8600.022.1066931
CATGGGG70150.019.8203754
TATACCG1759.9558056E-518.9968265
AGAGTAC55750.018.39775810-11
GCAGAGT69250.018.102579
GAGTACA56300.017.3908621
GTATAAT9100.017.2359331
TATACTG11350.017.1557245
Produced by FastQC (version 0.11.5)