##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921689_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3180157 Sequences flagged as poor quality 0 Sequence length 101 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.31973641552917 31.0 31.0 34.0 26.0 34.0 2 30.394805665254893 31.0 31.0 34.0 26.0 34.0 3 30.450962012252855 33.0 31.0 34.0 26.0 34.0 4 33.907285080579356 37.0 35.0 37.0 30.0 37.0 5 33.90464024260437 37.0 35.0 37.0 30.0 37.0 6 33.944743294120386 37.0 35.0 37.0 30.0 37.0 7 33.855330412932446 37.0 35.0 37.0 29.0 37.0 8 33.82725695618172 37.0 35.0 37.0 29.0 37.0 9 35.37721093644119 39.0 35.0 39.0 29.0 39.0 10-11 35.27245227201047 39.0 35.0 39.0 29.0 39.0 12-13 35.167095681125176 39.0 35.0 39.0 28.0 39.0 14-15 36.29410780662715 40.0 36.5 41.0 28.0 41.0 16-17 36.23364664071617 40.0 36.0 41.0 27.0 41.0 18-19 36.207102510976654 40.0 36.5 41.0 27.0 41.0 20-21 36.13291230590188 40.0 36.0 41.0 27.0 41.0 22-23 36.03160598674845 40.0 36.0 41.0 27.0 41.0 24-25 35.920373270879395 40.0 36.0 41.0 27.0 41.0 26-27 35.77606310002933 40.0 36.0 41.0 27.0 41.0 28-29 35.63823043956634 40.0 36.0 41.0 26.0 41.0 30-31 35.49492053379754 40.0 36.0 41.0 25.0 41.0 32-33 35.32418603861382 39.0 35.0 41.0 25.0 41.0 34-35 35.150901354870214 39.0 35.0 41.0 24.5 41.0 36-37 35.11518236363803 39.0 35.0 41.0 24.5 41.0 38-39 35.296115569137 39.5 35.0 41.0 25.0 41.0 40-41 35.3607801438734 40.0 35.0 41.0 24.5 41.0 42-43 35.204794134377636 40.0 35.0 41.0 24.0 41.0 44-45 35.08547659753905 40.0 35.0 41.0 23.5 41.0 46-47 34.93364620048633 40.0 35.0 41.0 23.0 41.0 48-49 34.777789587117866 39.0 35.0 41.0 22.0 41.0 50-51 33.1043569547038 37.0 32.5 39.5 18.0 40.0 52-53 33.225991672738175 37.5 33.0 39.5 17.5 40.0 54-55 34.14373598536173 39.0 34.0 40.5 20.0 41.0 56-57 34.16998657613445 39.0 34.0 41.0 19.0 41.0 58-59 33.99115358141123 38.5 34.0 41.0 18.0 41.0 60-61 33.74911647443821 38.0 34.0 40.5 16.5 41.0 62-63 33.46887339209982 37.5 34.0 40.0 13.5 41.0 64-65 33.18852088120178 37.0 33.0 40.0 12.5 41.0 66-67 32.853682066640104 36.5 33.0 39.5 9.0 41.0 68-69 32.49722042024969 36.0 33.0 39.0 7.5 41.0 70-71 32.092400469536564 35.5 32.0 39.0 4.5 41.0 72-73 31.731642651604936 35.0 32.0 38.0 2.0 40.0 74-75 31.334155043288746 35.0 32.0 37.0 2.0 39.0 76-77 30.95188083481413 35.0 32.0 37.0 2.0 39.0 78-79 30.602687068594413 35.0 31.0 36.0 2.0 39.0 80-81 30.28355722689163 35.0 31.0 36.0 2.0 37.0 82-83 29.969158755369627 35.0 31.0 35.0 2.0 37.0 84-85 29.70654027458393 35.0 31.0 35.0 2.0 36.5 86-87 29.471940693494062 35.0 31.0 35.0 2.0 36.0 88-89 29.254757548133632 35.0 30.5 35.0 2.0 36.0 90-91 29.032824637274196 34.0 30.0 35.0 2.0 35.5 92-93 28.847653590687504 34.0 30.0 35.0 2.0 35.0 94-95 28.62424622432163 34.0 30.0 35.0 2.0 35.0 96-97 28.397365601761173 34.0 30.0 35.0 2.0 35.0 98-99 28.13883182496965 34.0 29.5 35.0 2.0 35.0 100-101 27.07412307002453 33.0 27.0 35.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 109685.0 3 18644.0 4 13116.0 5 9692.0 6 8998.0 7 9110.0 8 9840.0 9 10582.0 10 11644.0 11 12430.0 12 12206.0 13 12495.0 14 13027.0 15 13957.0 16 13646.0 17 14314.0 18 13966.0 19 13248.0 20 13220.0 21 14139.0 22 15387.0 23 17703.0 24 20719.0 25 24421.0 26 28822.0 27 34203.0 28 40617.0 29 48033.0 30 56761.0 31 70083.0 32 86583.0 33 111177.0 34 152607.0 35 221436.0 36 365796.0 37 663895.0 38 739713.0 39 134227.0 40 15.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.01880191071059 18.540732858571296 13.517157317730833 24.923307912987283 2 15.559634113105702 19.71120287865599 39.812921348668205 24.9162416595701 3 18.594756669340498 24.133425517030645 29.70356353767631 27.568254275952548 4 13.17864780867768 16.288176791129228 37.055356740501665 33.47781865969143 5 14.257272143693282 37.1614094931212 34.62537918360668 13.955939179578838 6 33.00161362705056 35.69339262021144 17.538311456123086 13.766682296614905 7 28.49689244090417 31.690498310199878 21.73231402291939 18.080295225976563 8 26.123098029237646 34.90181413548098 20.370582957046178 18.604504878235186 9 26.6939105386299 15.607059297089235 19.734270044529424 37.96476011975144 10-11 25.3576863769868 25.286987238616828 28.31907766558238 21.03624871881399 12-13 25.940031364783252 22.902126275649014 27.84464304473665 23.31319931483109 14-15 23.236487567355518 24.431092928553486 25.042402694016214 27.290016810074786 16-17 23.50198641584402 27.236237458985595 25.952069667435566 23.309706457734816 18-19 23.4401891071549 26.85358080083729 27.021862645094348 22.684367446913463 20-21 24.052475841688043 26.107111809486188 26.839645548089543 23.00076680073623 22-23 23.936704492512582 25.929946109730288 26.455337703653537 23.67801169410359 24-25 23.7601463873136 26.076891716924127 26.50325703594001 23.659704859822256 26-27 23.552784723990335 26.265820445774118 26.515113509963623 23.66628132027192 28-29 23.6954337389751 26.2895492863399 26.445678649321408 23.569338325363592 30-31 23.916776699438273 26.145358991450387 26.277256796125588 23.660607512985756 32-33 23.70252032526717 26.251541937152645 26.116960011447087 23.928977726133095 34-35 24.051143225654695 26.303490455810692 26.144998469325902 23.50036784920871 36-37 24.134210738984816 25.97902351882767 26.241355314384652 23.64541042780286 38-39 23.827132230994337 26.19175126241106 26.20893665649275 23.772179850101853 40-41 24.10676537173909 26.0320740124527 26.238670412235287 23.622490203572923 42-43 23.96106346099837 25.98180578569837 26.112063903229803 23.945066850073456 44-45 23.861363129688666 26.07905833937942 26.230434916185935 23.82914361474598 46-47 24.029865608856763 25.9907908017681 26.020554310288595 23.95878927908654 48-49 23.81942551357586 26.13325475600321 26.091071966014255 23.956247764406676 50-51 23.893471784467987 26.14933727107318 26.130272509496145 23.826918434962693 52-53 24.065925563977427 25.983906551036203 26.166091187806963 23.784076697179415 54-55 23.68886910553413 25.939092653066048 26.385510180768218 23.986528060631606 56-57 23.724473395605642 26.053571203469094 26.236748225743423 23.985207175181838 58-59 23.800647962357104 25.86578174740562 26.36291848750792 23.97065180272936 60-61 23.757648154553987 25.98819475579881 26.46341453805344 23.790742551593773 62-63 23.779214282056433 25.959024175027672 26.43314937149655 23.82861217141934 64-65 23.58552865341184 25.828227171331473 26.408932788374923 24.177311386881765 66-67 23.607668543313643 25.87264399553588 26.319906885620544 24.199780575529932 68-69 23.728349705189988 25.815991853749402 26.38979330133801 24.065865139722597 70-71 23.617469702994505 25.69526672896949 26.3617819447429 24.325481623293104 72-73 23.534827247938544 25.8167281839487 26.314796006633973 24.333648561478785 74-75 23.625054535536844 25.889841130437972 26.292628118924576 24.192476215100605 76-77 23.617714156074136 25.622333486680827 26.42483977287766 24.33511258436738 78-79 23.5558082436008 25.684113224904735 26.397823885291956 24.36225464620251 80-81 23.610514645218586 25.799823332274798 26.297723728555795 24.291938293950825 82-83 23.662000597921647 25.707368572677186 26.386499767623757 24.24413106177741 84-85 23.54889315247667 25.766669687072792 26.38845837158087 24.29597878886967 86-87 23.573569147939317 25.76475481836871 26.34238060254217 24.319295431149804 88-89 23.439013511575386 25.570683994937692 26.428550039165128 24.561752454321798 90-91 23.397128696407364 25.613377245348534 26.496440620663076 24.493053437581025 92-93 23.53620844819135 25.449746957740132 26.603654336865368 24.410390257203154 94-95 23.350101071396203 25.373656814339924 26.653264034738612 24.62297807952526 96-97 23.42468003382036 25.190791203428443 26.680299263505603 24.7042294992456 98-99 23.23528577327907 25.17287305305034 26.626926459601485 24.964914714069106 100-101 23.391659570819183 25.06698364429486 26.747162633041228 24.794194151844724 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 40.0 1 38.0 2 53.5 3 71.0 4 66.5 5 73.0 6 123.0 7 274.5 8 428.0 9 464.0 10 455.0 11 456.5 12 506.5 13 579.0 14 673.0 15 806.0 16 891.5 17 966.0 18 1073.0 19 1184.0 20 1270.5 21 1341.5 22 1486.0 23 1618.0 24 1825.0 25 2203.5 26 2787.0 27 3759.5 28 5309.0 29 7887.0 30 12010.5 31 17862.0 32 25726.5 33 33238.0 34 40201.5 35 48723.5 36 59630.5 37 70160.0 38 79548.0 39 88763.5 40 96422.0 41 103656.0 42 110903.5 43 117905.5 44 124089.5 45 130137.5 46 133876.0 47 136297.5 48 138734.0 49 139145.5 50 137174.0 51 134710.0 52 132485.0 53 129095.0 54 125505.5 55 118588.5 56 108305.0 57 97321.0 58 87520.0 59 76155.5 60 62222.5 61 51615.0 62 43053.0 63 33141.5 64 24122.0 65 17946.5 66 13512.0 67 10407.5 68 7906.5 69 5970.5 70 4626.5 71 3416.0 72 2481.5 73 1857.5 74 1434.0 75 1046.0 76 715.0 77 469.5 78 312.0 79 239.5 80 171.5 81 136.0 82 121.0 83 100.0 84 93.5 85 75.5 86 58.5 87 50.0 88 48.0 89 44.5 90 35.5 91 28.0 92 23.0 93 20.5 94 18.5 95 19.0 96 15.0 97 8.5 98 6.5 99 5.5 100 3.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.05858201340374076 2 0.08059350528920428 3 0.07685155166867548 4 0.07675721670345206 5 0.07160023860457204 6 0.011445975780441028 7 0.015439489308232267 8 0.019684562743285946 9 0.00745246225264979 10-11 0.015282264366193243 12-13 0.024998765784204995 14-15 0.04429026617239337 16-17 0.029511121620725014 18-19 0.011713258181907372 20-21 0.02242027673476498 22-23 0.04056403504606848 24-25 0.037513871170511394 26-27 0.02410258361458255 28-29 0.01326978510809372 30-31 0.013285507602297622 32-33 0.009732223912215655 34-35 0.005833045349647832 36-37 7.546797217873205E-4 38-39 0.004119293481422458 40-41 0.0013678569957395186 42-43 0.23929636178339625 44-45 0.20799287582342632 46-47 0.2140774810803366 48-49 0.2220645081359191 50-51 0.2126624566019854 52-53 0.2201935313256547 54-55 0.21679747257761173 56-57 0.22002058388941176 58-59 0.22915535302187912 60-61 0.23314886654967035 62-63 0.218369721998002 64-65 0.21849550195163323 66-67 0.21557111802970735 68-69 0.209816685151079 70-71 0.20159382068243803 72-73 0.21363725124262734 74-75 0.2128039590498205 76-77 0.20555588922182144 78-79 0.22522472947090347 80-81 0.23692226515860695 82-83 0.23585313555274157 84-85 0.22937546794073374 86-87 0.24990904537103042 88-89 0.24187485083283625 90-91 0.2485569108694948 92-93 0.2440760000213826 94-95 0.24824246098541675 96-97 0.25479874106844413 98-99 0.2480066235723582 100-101 0.25514463594092995 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 3180157.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 60.29899266716773 #Duplication Level Percentage of deduplicated Percentage of total 1 77.66803506675612 46.833042769636535 2 12.445662453070405 15.009218179914743 3 4.171921418414188 7.546879770508713 4 1.8881728678940852 4.55419687661962 5 1.0522163458666407 3.17237928618433 6 0.6389226400231877 2.3115834951387386 7 0.4461144382389177 1.8830175868060306 8 0.3032616452407386 1.4629097378083618 9 0.23281812511028896 1.2634828576928148 >10 1.0852876314514672 11.422798008803905 >50 0.05035913874878202 2.062991898784546 >100 0.01560979191706913 1.5769314524692724 >500 0.001096360730456173 0.4870062641414803 >1k 5.220765375917855E-4 0.413561815491053 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 3.1444988407805024E-5 2 0.0 0.0 0.0 0.0 3.1444988407805024E-5 3 0.0 0.0 0.0 0.0 3.1444988407805024E-5 4 0.0 0.0 0.0 0.0 3.1444988407805024E-5 5 0.0 0.0 0.0 0.0 3.1444988407805024E-5 6 0.0 0.0 0.0 0.0 9.433496522341507E-5 7 0.0 0.0 0.0 0.0 9.433496522341507E-5 8 0.0 0.0 0.0 0.0 1.257799536312201E-4 9 0.0 0.0 0.0 0.0 1.257799536312201E-4 10-11 0.0 0.0 0.0 0.0 1.257799536312201E-4 12-13 0.0 0.0 0.0 0.0 2.9872738987414776E-4 14-15 0.0 0.0 0.0 0.0 4.559523319131728E-4 16-17 0.0 0.0 0.0 0.0 5.660097913404904E-4 18-19 0.0 0.0 0.0 0.0 6.288997681561005E-4 20-21 0.0 0.0 0.0 0.0 7.232347333795155E-4 22-23 0.0 0.0 0.0 0.0 8.175696986029306E-4 24-25 0.0 0.0 0.0 4.716748261170753E-5 9.119046638263457E-4 26-27 0.0 0.0 0.0 3.144498840780502E-4 9.119046638263457E-4 28-29 0.0 0.0 0.0 0.001226354547904396 9.119046638263457E-4 30-31 0.0 0.0 0.0 0.005974547797482955 9.119046638263457E-4 32-33 0.0 0.0 0.0 0.019873232673732776 9.119046638263457E-4 34-35 0.0 0.0 0.0 0.03966785287644604 9.747946406419557E-4 36-37 0.0 0.0 0.0 0.07518496728306182 9.747946406419557E-4 38-39 0.0 0.0 0.0 0.13357831075635573 9.747946406419557E-4 40-41 0.0 0.0 0.0 0.1995184514475229 9.747946406419557E-4 42-43 0.0 0.0 0.0 0.2708985751332403 0.0010062396290497608 44-45 0.0 0.0 0.0 0.36067401703752366 0.0010691296058653707 46-47 0.0 0.0 0.0 0.4679014275081388 0.0011162970884770783 48-49 0.0 0.0 0.0 0.5799870886877597 0.0011949095594965908 50-51 0.0 0.0 0.0 0.6976070678271544 0.0011949095594965908 52-53 0.0 0.0 0.0 0.8209185898683619 0.001352134501535616 54-55 0.0 0.0 0.0 0.9605186159048122 0.0013835794899434211 56-57 0.0 0.0 0.0 1.1255576375631768 0.0014150244783512262 58-59 0.0 0.0 0.0 1.3004232180989805 0.001446469466759031 60-61 0.0 0.0 0.0 1.4871435592645268 0.0014936369493707387 62-63 0.0 0.0 0.0 1.681457865130558 0.0015722494203902512 64-65 0.0 0.0 0.0 1.895944131060196 0.0016036944087980563 66-67 0.0 3.1444988407805024E-5 0.0 2.146576411164606 0.0016508618914097637 68-69 0.0 3.1444988407805024E-5 0.0 2.423025026751824 0.0016665843856136662 70-71 0.0 3.1444988407805024E-5 0.0 2.706690267178633 0.0016980293740214713 72-73 0.0 3.1444988407805024E-5 0.0 3.0068484040253356 0.0017923643392448864 74-75 0.0 3.1444988407805024E-5 0.0 3.3227133125817376 0.001933866787080009 76-77 0.0 3.1444988407805024E-5 0.0 3.679157978678411 0.0020596467407112294 78-79 0.0 3.1444988407805024E-5 0.0 4.076402517234212 0.002106814223322937 80-81 0.0 3.1444988407805024E-5 0.0 4.494337858162348 0.002153981705934644 82-83 0.0 4.716748261170753E-5 0.0 4.928939042946622 0.0022168716827502544 84-85 3.1444988407805024E-5 6.288997681561005E-5 0.0 5.3928155119385615 0.0022325941769541567 86-87 3.1444988407805024E-5 6.288997681561005E-5 0.0 5.888451419222385 0.002311206647973669 88-89 3.1444988407805024E-5 6.288997681561005E-5 0.0 6.4288492675047175 0.002405541613197084 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 2355 0.0 49.174065 1 GTATCAA 4180 0.0 38.377583 1 TCAACGC 4830 0.0 31.842728 4 CAACGCA 4885 0.0 31.774233 5 ATCAACG 5045 0.0 30.577389 3 AACGCAG 5290 0.0 29.231636 6 TATCAAC 5385 0.0 29.176105 2 GTACATG 7975 0.0 26.185396 1 ACGCAGA 6225 0.0 24.082815 7 TACATGG 8430 0.0 23.761284 2 CGCAGAG 6385 0.0 23.183582 8 ACATGGG 8520 0.0 22.50712 3 CATGGGG 7255 0.0 21.002935 4 GAGTACA 6170 0.0 18.153652 1 TAAGGCG 1075 0.0 18.103697 5 AGAGTAC 6325 0.0 18.078419 10-11 GCAGAGT 7710 0.0 17.907671 9 TATACCG 320 8.358256E-9 17.800129 5 ATGGGGG 4100 0.0 17.365978 5 TATAGGG 630 0.0 16.57552 2 >>END_MODULE