##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921673_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2336287 Sequences flagged as poor quality 0 Sequence length 101 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.925040887527945 31.0 31.0 34.0 26.0 34.0 2 29.978541163821056 31.0 31.0 34.0 25.0 34.0 3 30.041141349500297 31.0 31.0 34.0 25.0 34.0 4 33.479133770808126 37.0 35.0 37.0 28.0 37.0 5 33.470852254025296 37.0 35.0 37.0 28.0 37.0 6 33.5085518174779 37.0 35.0 37.0 28.0 37.0 7 33.40499775926502 37.0 35.0 37.0 27.0 37.0 8 33.37241828593833 37.0 35.0 37.0 27.0 37.0 9 34.87695176149163 39.0 35.0 39.0 27.0 39.0 10-11 34.76592409237392 39.0 35.0 39.0 27.0 39.0 12-13 34.643137165938946 39.0 35.0 39.0 27.0 39.0 14-15 35.734500941023086 40.0 36.0 41.0 27.0 41.0 16-17 35.66939849427746 40.0 36.0 41.0 27.0 41.0 18-19 35.628953334928454 40.0 36.0 41.0 26.0 41.0 20-21 35.54797270198396 40.0 36.0 41.0 25.5 41.0 22-23 35.449336061879386 40.0 36.0 41.0 25.0 41.0 24-25 35.338065913990874 40.0 36.0 41.0 25.0 41.0 26-27 35.18978811250501 40.0 35.0 41.0 24.0 41.0 28-29 35.04425719100436 39.0 35.0 41.0 24.0 41.0 30-31 34.89224804144354 39.0 35.0 41.0 23.0 41.0 32-33 34.7141588340816 39.0 35.0 41.0 22.0 41.0 34-35 34.533945101779025 39.0 34.0 41.0 20.5 41.0 36-37 34.50567117824137 39.0 34.5 41.0 20.0 41.0 38-39 34.68026081555905 39.0 35.0 41.0 21.5 41.0 40-41 34.73982477324061 39.5 35.0 41.0 20.5 41.0 42-43 34.577312419236165 39.0 35.0 41.0 18.0 41.0 44-45 34.45551317111297 39.0 35.0 41.0 16.5 41.0 46-47 34.290897265618476 39.0 34.0 41.0 15.0 41.0 48-49 34.12239420927309 39.0 34.0 41.0 13.5 41.0 50-51 32.46440655621505 37.0 32.0 39.5 8.5 40.0 52-53 32.576794717429834 37.5 32.0 39.5 8.0 40.0 54-55 33.48030186359809 38.0 33.0 40.0 8.0 41.0 56-57 33.50784984892695 38.0 33.0 41.0 7.0 41.0 58-59 33.32648107873733 38.0 33.0 40.0 2.0 41.0 60-61 33.080485830722 37.5 33.0 40.0 2.0 41.0 62-63 32.7941299592045 37.0 33.0 40.0 2.0 41.0 64-65 32.51312938008044 37.0 32.5 40.0 2.0 41.0 66-67 32.179618557137886 36.0 32.0 39.0 2.0 41.0 68-69 31.82834193744176 36.0 32.0 39.0 2.0 41.0 70-71 31.42389355417378 35.0 31.5 39.0 2.0 40.5 72-73 31.07142487202985 35.0 31.0 37.5 2.0 40.0 74-75 30.67848192452383 35.0 31.0 37.0 2.0 39.0 76-77 30.311603839767976 35.0 31.0 36.5 2.0 39.0 78-79 29.965973786610977 35.0 31.0 36.0 2.0 38.5 80-81 29.65022961648119 35.0 30.0 36.0 2.0 37.0 82-83 29.335928334147304 35.0 30.0 35.0 2.0 37.0 84-85 29.072563430777127 35.0 30.0 35.0 2.0 36.5 86-87 28.841873023305784 34.0 30.0 35.0 2.0 36.0 88-89 28.617124522800495 34.0 29.5 35.0 2.0 36.0 90-91 28.390330040786942 34.0 29.0 35.0 2.0 35.5 92-93 28.194707884776143 34.0 29.0 35.0 2.0 35.0 94-95 27.964372313846717 34.0 29.0 35.0 2.0 35.0 96-97 27.729424509916804 34.0 29.0 35.0 2.0 35.0 98-99 27.45668361806576 34.0 29.0 35.0 2.0 35.0 100-101 26.400901729967252 33.0 25.5 34.5 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 100386.0 3 16398.0 4 11014.0 5 8193.0 6 7416.0 7 7440.0 8 8016.0 9 8441.0 10 9312.0 11 9712.0 12 9745.0 13 9884.0 14 10431.0 15 10878.0 16 11315.0 17 11763.0 18 11215.0 19 10429.0 20 10738.0 21 11120.0 22 12281.0 23 13884.0 24 16424.0 25 19259.0 26 22937.0 27 26644.0 28 31671.0 29 37010.0 30 43673.0 31 52947.0 32 66054.0 33 84801.0 34 115078.0 35 165626.0 36 271877.0 37 475116.0 38 494992.0 39 92153.0 40 14.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.43033316945236 17.318935790063332 11.733264012251674 25.517467028232637 2 16.11182930559018 18.63761791311246 39.43286052434765 25.81769225694971 3 20.053207483485636 22.300369137089582 28.87000703322234 28.776416346202442 4 13.075394590251074 14.531295443360145 36.16635048617837 36.22695948021041 5 13.98982150367966 37.12722606421481 34.76185214025115 14.121100291854377 6 35.146030130232155 34.787263506615204 16.13199837846561 13.93470798468703 7 29.88150583481023 31.209727823012184 20.092723396604423 18.816042945573162 8 27.067484736115237 35.51474245967089 18.88903063736298 18.528742166850893 9 26.592807507026496 15.212541275033622 18.70365788615325 39.49099333178663 10-11 26.184605854841088 25.00720783853243 27.47818545260196 21.330000854024522 12-13 26.359068106726546 22.143393059927455 27.501554618206104 23.995984215139895 14-15 23.06436550188255 23.997761408445758 24.45470727246802 28.48316581720367 16-17 23.775023783244094 27.299974568412257 25.39765755382377 23.52734409451988 18-19 23.77584390183764 26.5737926777404 26.55213235399561 23.098231066426347 20-21 24.014224442314827 25.782047859901276 26.843914936756114 23.359812761027783 22-23 23.760442843801904 25.751343102467146 26.534660757172812 23.953553296558137 24-25 23.618841688922668 25.947516872635024 26.620730995873497 23.812910442568818 26-27 23.56721547288916 26.14394684538991 26.443091366978084 23.84574631474285 28-29 23.69671715701551 26.37943788248751 26.2871443101612 23.636700650335783 30-31 23.852952199447824 26.08492315700636 26.271757270188584 23.79036737335723 32-33 23.54377332281722 26.11543396626211 26.286103212729778 24.054689498190893 34-35 23.960558529439524 26.201490858650946 26.307882922072682 23.53006768983685 36-37 24.000898866785803 25.94300756546211 26.347454815892824 23.70863875185926 38-39 23.736318111949746 26.09984808722165 26.364700247280958 23.799133553547648 40-41 23.996015866337196 25.92255080433872 26.42724483117726 23.65418849814683 42-43 23.71768980713358 25.96130230682524 26.341737031146266 23.979270854894914 44-45 23.762109149173053 26.07790083492444 26.480181051829817 23.679808964072688 46-47 23.963104092428054 26.059380597717475 26.161135347112364 23.816379962742108 48-49 23.692803063528192 26.227149480608357 26.16146016853608 23.918587287327366 50-51 23.790348521329786 26.305035721913754 26.251918192571523 23.652697564184933 52-53 23.991217431827973 26.115358492500224 26.239766770400998 23.653657305270805 54-55 23.476564845552726 26.076820470590256 26.61491975260986 23.831694931247156 56-57 23.638213426430596 26.22967027004654 26.357572491328963 23.7745438121939 58-59 23.6623493665174 26.055262785950806 26.459525766858928 23.822862080672866 60-61 23.563553799076303 26.161853328691905 26.59757714821066 23.677015724021132 62-63 23.638076929840476 26.106272311270722 26.595399272828963 23.66025148605984 64-65 23.333953818730198 26.047240669986977 26.62620072502432 23.992604786258507 66-67 23.381530935998516 26.086022266327408 26.474562495509957 24.05788430216412 68-69 23.725024526491293 25.900510901556295 26.564822310261455 23.80964226169096 70-71 23.519650473370916 25.80010330899704 26.48282611217453 24.197420105457514 72-73 23.497336898003525 25.980775742515128 26.453436942372477 24.06845041710887 74-75 23.405812547633374 26.098092692134323 26.499446091136132 23.996648669096174 76-77 23.562826255144174 25.750526211057377 26.576081455927785 24.11056607787066 78-79 23.449654382574792 25.80911795173152 26.577947828175702 24.16327983751799 80-81 23.544132257782216 25.937975637085582 26.40732809285294 24.110564012279266 82-83 23.52637106004163 25.99761230243368 26.43150319417824 24.04451344334645 84-85 23.42795410280349 25.99075990663392 26.505976291295646 24.07530969926694 86-87 23.39059011749321 26.067249853109352 26.448940295789175 24.093219733608258 88-89 23.329538088372008 25.9289519847172 26.44892485457877 24.29258507233202 90-91 23.347640000549156 25.870841856697645 26.5630791883469 24.21843895440629 92-93 23.40892291072928 25.649710994066293 26.76999778199261 24.171368313211815 94-95 23.30472552290341 25.486500099535274 26.839579171729238 24.36919520583208 96-97 23.323473621839305 25.3053700245034 26.90469846573793 24.466457887919365 98-99 23.15809231660294 25.31332621858023 26.890978028283826 24.637603436533006 100-101 23.333188884164496 25.240218252682784 26.920576841308574 24.506016021844147 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 18.0 1 14.5 2 20.5 3 36.0 4 39.5 5 44.5 6 74.0 7 150.0 8 259.0 9 325.5 10 331.0 11 334.0 12 369.0 13 422.0 14 479.5 15 559.0 16 636.0 17 706.0 18 808.0 19 923.5 20 1033.0 21 1198.0 22 1379.5 23 1641.5 24 2039.5 25 2565.0 26 3478.5 27 5050.0 28 7091.0 29 9678.5 30 13157.5 31 18031.5 32 24754.0 33 29129.0 34 31453.5 35 35755.5 36 42115.0 37 48466.5 38 53957.5 39 59254.0 40 64068.5 41 69292.0 42 73993.0 43 78451.5 44 83097.0 45 88323.0 46 92619.0 47 95783.0 48 98324.5 49 99041.0 50 99199.5 51 99665.0 52 99560.0 53 97998.0 54 95500.0 55 90813.5 56 84026.5 57 76300.0 58 68584.0 59 59704.5 60 49368.5 61 40674.0 62 33435.0 63 25796.5 64 18693.5 65 13729.0 66 10323.5 67 7975.0 68 6179.0 69 4673.5 70 3578.0 71 2593.5 72 1811.5 73 1335.5 74 1042.0 75 779.0 76 557.0 77 376.5 78 257.5 79 190.0 80 145.5 81 111.0 82 74.0 83 62.5 84 59.0 85 55.0 86 52.0 87 44.0 88 33.5 89 30.5 90 26.0 91 15.5 92 13.0 93 14.0 94 14.0 95 16.0 96 12.0 97 9.5 98 8.0 99 4.5 100 4.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.05388892717375904 2 0.07400631857301779 3 0.07075329358079722 4 0.07062488469952535 5 0.06681542122179339 6 0.009759074976661685 7 0.013140508850154112 8 0.016307927921526764 9 0.005521581894690164 10-11 0.012348654082310949 12-13 0.021594093533885177 14-15 0.03809463477731974 16-17 0.02606700289818845 18-19 0.009352446852634116 20-21 0.019197127750143712 22-23 0.03578327491442618 24-25 0.033150892848352966 26-27 0.019667960314807213 28-29 0.011257178591500102 30-31 0.011021762309168352 32-33 0.008111161000339427 34-35 0.00498654488939073 36-37 5.136355250874572E-4 38-39 0.0033386309130684715 40-41 8.560592084790953E-4 42-43 0.2255501999540296 44-45 0.19599475578128883 46-47 0.20119531547279937 48-49 0.20791538025936024 50-51 0.19967581037774895 52-53 0.20761575953639255 54-55 0.20318565313251327 56-57 0.20624606480282603 58-59 0.21433582432295348 60-61 0.2186589233257729 62-63 0.20485496858904748 64-65 0.2045553478660798 66-67 0.2028646309293336 68-69 0.1979422904805788 70-71 0.1903661664855388 72-73 0.2012381184332233 74-75 0.20014664294241247 76-77 0.1935977899975474 78-79 0.21196026001942397 80-81 0.22270380308583665 82-83 0.22133410835227008 84-85 0.2154487012939763 86-87 0.23419639795966848 88-89 0.22685569024696023 90-91 0.23280530174588995 92-93 0.22968068563494126 94-95 0.23349014911267324 96-97 0.2392685487699071 98-99 0.23325473283034148 100-101 0.23943976061160294 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 2336287.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 64.32689094398341 #Duplication Level Percentage of deduplicated Percentage of total 1 80.13636983806242 51.54923523219763 2 11.467667373499427 14.753587770339488 3 3.5872919920401847 6.922780222685819 4 1.607553160101793 4.136355872660957 5 0.8848202083769146 2.8458866524647233 6 0.5687092850366702 2.1949980094430797 7 0.3605736971752007 1.6236209426820625 8 0.2509652316081393 1.2915050467510656 9 0.19561789936480165 1.1325142151217646 >10 0.8954685309581479 9.868935527888729 >50 0.033608478351208795 1.4155481882667376 >100 0.009487526628549353 1.113511804423914 >500 0.001133401412171778 0.517047721778531 >1k 7.333773843436918E-4 0.634472793295522 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 4.280296042395476E-5 0.0 5 0.0 0.0 0.0 4.280296042395476E-5 0.0 6 0.0 0.0 0.0 4.280296042395476E-5 0.0 7 0.0 0.0 0.0 4.280296042395476E-5 0.0 8 0.0 0.0 0.0 4.280296042395476E-5 0.0 9 0.0 0.0 0.0 4.280296042395476E-5 0.0 10-11 0.0 0.0 0.0 1.284088812718643E-4 1.4981036148384167E-4 12-13 0.0 0.0 0.0 1.284088812718643E-4 2.1401480211977381E-4 14-15 0.0 0.0 0.0 1.284088812718643E-4 2.1401480211977381E-4 16-17 0.0 0.0 0.0 1.284088812718643E-4 2.1401480211977381E-4 18-19 0.0 0.0 0.0 1.284088812718643E-4 2.1401480211977381E-4 20-21 0.0 2.140148021197738E-5 0.0 1.284088812718643E-4 2.1401480211977381E-4 22-23 0.0 4.280296042395476E-5 0.0 1.284088812718643E-4 2.1401480211977381E-4 24-25 0.0 4.280296042395476E-5 0.0 1.7121184169581905E-4 2.1401480211977381E-4 26-27 0.0 4.280296042395476E-5 0.0 3.424236833916381E-4 2.354162823317512E-4 28-29 0.0 4.280296042395476E-5 0.0 0.002717987986921127 2.568177625437286E-4 30-31 0.0 4.280296042395476E-5 0.0 0.01200623039891931 2.568177625437286E-4 32-33 0.0 4.280296042395476E-5 0.0 0.029298626410197037 2.568177625437286E-4 34-35 0.0 4.280296042395476E-5 0.0 0.05046469033984266 2.568177625437286E-4 36-37 0.0 4.280296042395476E-5 0.0 0.08785307627016714 2.568177625437286E-4 38-39 0.0 8.560592084790953E-5 0.0 0.15143687397995195 2.568177625437286E-4 40-41 2.140148021197738E-5 8.560592084790953E-5 0.0 0.2281183775794669 2.568177625437286E-4 42-43 4.280296042395476E-5 8.560592084790953E-5 0.0 0.30899457130052943 2.7821924275570596E-4 44-45 4.280296042395476E-5 8.560592084790953E-5 0.0 0.4005287021671567 2.9962072296768334E-4 46-47 4.280296042395476E-5 8.560592084790953E-5 0.0 0.5080283372719191 2.9962072296768334E-4 48-49 4.280296042395476E-5 8.560592084790953E-5 0.0 0.6297599567176464 2.9962072296768334E-4 50-51 4.280296042395476E-5 8.560592084790953E-5 0.0 0.7642468583697123 3.424236833916381E-4 52-53 4.280296042395476E-5 1.284088812718643E-4 0.0 0.9014731494889112 4.0662812402757025E-4 54-55 4.280296042395476E-5 1.284088812718643E-4 0.0 1.047324237133537 4.2802960423954763E-4 56-57 4.280296042395476E-5 1.4981036148384167E-4 0.0 1.215839492322647 4.2802960423954763E-4 58-59 4.280296042395476E-5 1.7121184169581905E-4 0.0 1.4035946782223245 4.2802960423954763E-4 60-61 4.280296042395476E-5 1.7121184169581905E-4 0.0 1.6112746421993531 4.2802960423954763E-4 62-63 4.280296042395476E-5 1.7121184169581905E-4 0.0 1.8182483573293864 4.2802960423954763E-4 64-65 4.280296042395476E-5 1.7121184169581905E-4 0.0 2.0318351298449207 4.708325646635024E-4 66-67 4.280296042395476E-5 1.7121184169581905E-4 0.0 2.2786369996494438 4.708325646635024E-4 68-69 4.280296042395476E-5 1.7121184169581905E-4 0.0 2.556663629083242 4.708325646635024E-4 70-71 4.280296042395476E-5 1.7121184169581905E-4 0.0 2.854636438074603 4.708325646635024E-4 72-73 4.280296042395476E-5 1.7121184169581905E-4 0.0 3.165086310029547 4.922340448754798E-4 74-75 4.280296042395476E-5 1.7121184169581905E-4 0.0 3.48018030319049 5.136355250874572E-4 76-77 4.280296042395476E-5 1.7121184169581905E-4 0.0 3.8197789911941467 5.136355250874572E-4 78-79 4.280296042395476E-5 1.7121184169581905E-4 0.0 4.209842369537647 5.136355250874572E-4 80-81 4.280296042395476E-5 1.7121184169581905E-4 0.0 4.6342551236213705 5.136355250874572E-4 82-83 4.280296042395476E-5 1.9261332190779643E-4 0.0 5.070181874059138 5.136355250874572E-4 84-85 4.280296042395476E-5 2.1401480211977381E-4 0.0 5.506301237818812 5.136355250874572E-4 86-87 6.420444063593214E-5 2.1401480211977381E-4 0.0 5.966433062376327 5.136355250874572E-4 88-89 8.560592084790953E-5 2.1401480211977381E-4 0.0 6.4787630971708525 5.136355250874572E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 1515 0.0 48.562424 1 GTATCAA 2750 0.0 40.38913 1 TCAACGC 3160 0.0 33.79906 4 CAACGCA 3245 0.0 32.61906 5 ATCAACG 3385 0.0 31.832232 3 AACGCAG 3405 0.0 31.06567 6 TATCAAC 3545 0.0 30.395515 2 GTACATG 5515 0.0 29.951256 1 TACATGG 5495 0.0 28.420263 2 ACATGGG 5565 0.0 27.209803 3 ACGCAGA 4060 0.0 25.826262 7 TATACCG 205 9.658834E-10 25.469484 5 CATGGGG 4935 0.0 24.047064 4 CGCAGAG 4325 0.0 24.025984 8 GTGTAGC 1275 0.0 23.825996 1 GAGTACA 3685 0.0 21.12456 1 TAAGGTG 1080 0.0 20.216938 5 GCAGAGT 5205 0.0 19.32625 9 ATGGGGG 2960 0.0 19.242914 5 AGAGTAC 4155 0.0 18.27239 10-11 >>END_MODULE