##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921671_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3278825 Sequences flagged as poor quality 0 Sequence length 101 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.8902067051459 31.0 31.0 34.0 26.0 34.0 2 29.950419128803762 31.0 31.0 34.0 25.0 34.0 3 30.00764542175932 31.0 31.0 34.0 25.0 34.0 4 33.45704452052183 37.0 35.0 37.0 28.0 37.0 5 33.44856343354708 37.0 35.0 37.0 28.0 37.0 6 33.48218187917928 37.0 35.0 37.0 28.0 37.0 7 33.381040769177986 37.0 35.0 37.0 27.0 37.0 8 33.34620877905957 37.0 35.0 37.0 27.0 37.0 9 34.844951468895104 39.0 35.0 39.0 27.0 39.0 10-11 34.72813721378848 39.0 35.0 39.0 27.0 39.0 12-13 34.61253970553476 39.0 35.0 39.0 27.0 39.0 14-15 35.68650705664377 40.0 36.0 41.0 27.0 41.0 16-17 35.61982813965369 40.0 36.0 41.0 26.5 41.0 18-19 35.588199431198674 40.0 36.0 41.0 26.0 41.0 20-21 35.50963287153172 40.0 36.0 41.0 25.5 41.0 22-23 35.40395644781286 40.0 36.0 41.0 25.0 41.0 24-25 35.2902131098793 40.0 35.5 41.0 25.0 41.0 26-27 35.13988029248283 39.0 35.0 41.0 24.0 41.0 28-29 34.997225073006334 39.0 35.0 41.0 23.5 41.0 30-31 34.84693281892142 39.0 35.0 41.0 23.0 41.0 32-33 34.664979070246204 39.0 34.5 41.0 22.0 41.0 34-35 34.4887946139242 39.0 34.0 41.0 20.0 41.0 36-37 34.45327655486341 39.0 34.5 41.0 20.0 41.0 38-39 34.628401790275475 39.0 35.0 41.0 20.5 41.0 40-41 34.68727562465213 39.0 35.0 41.0 20.0 41.0 42-43 34.52760318101759 39.0 35.0 41.0 18.0 41.0 44-45 34.406109048210865 39.0 34.5 41.0 15.5 41.0 46-47 34.250305978513644 39.0 34.0 41.0 15.0 41.0 48-49 34.086340228587986 39.0 34.0 41.0 12.5 41.0 50-51 32.43865165112502 37.0 32.0 39.5 8.5 40.0 52-53 32.55126028379068 37.5 32.0 39.5 8.0 40.0 54-55 33.45776810290272 38.0 33.0 40.0 8.0 41.0 56-57 33.48789246147629 38.0 33.0 41.0 7.0 41.0 58-59 33.309457808818706 38.0 33.0 40.0 2.0 41.0 60-61 33.0642978811007 38.0 33.0 40.0 2.0 41.0 62-63 32.779306001387695 37.0 33.0 40.0 2.0 41.0 64-65 32.503234085381195 37.0 32.5 40.0 2.0 41.0 66-67 32.167477831235274 36.0 32.0 39.5 2.0 41.0 68-69 31.814436574077604 36.0 32.0 39.0 2.0 41.0 70-71 31.408217272956016 35.0 31.5 39.0 2.0 40.5 72-73 31.0488446318422 35.0 31.0 37.5 2.0 40.0 74-75 30.65027227741645 35.0 31.0 37.0 2.0 39.0 76-77 30.272131022546183 35.0 31.0 36.5 2.0 39.0 78-79 29.92194612399259 35.0 30.5 36.0 2.0 38.5 80-81 29.600561176641023 35.0 30.0 36.0 2.0 37.0 82-83 29.281852340396334 35.0 30.0 35.0 2.0 37.0 84-85 29.01212568526835 34.5 30.0 35.0 2.0 36.5 86-87 28.768700830327937 34.0 29.5 35.0 2.0 36.0 88-89 28.544461964270738 34.0 29.0 35.0 2.0 36.0 90-91 28.31088728431679 34.0 29.0 35.0 2.0 35.5 92-93 28.113958963958126 34.0 29.0 35.0 2.0 35.0 94-95 27.876699884867293 34.0 29.0 35.0 2.0 35.0 96-97 27.630759952116993 34.0 29.0 35.0 2.0 35.0 98-99 27.34860262441576 34.0 28.5 35.0 2.0 35.0 100-101 26.282829367227592 33.0 25.0 34.5 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 140615.0 3 23242.0 4 15454.0 5 11482.0 6 10438.0 7 10680.0 8 11375.0 9 12170.0 10 13096.0 11 14191.0 12 14027.0 13 13992.0 14 14862.0 15 15373.0 16 15763.0 17 16314.0 18 15370.0 19 14906.0 20 15236.0 21 15798.0 22 17652.0 23 20199.0 24 23661.0 25 27769.0 26 32483.0 27 38579.0 28 45204.0 29 52581.0 30 62794.0 31 75495.0 32 93617.0 33 120092.0 34 163149.0 35 232899.0 36 376817.0 37 659631.0 38 697273.0 39 124533.0 40 13.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.43309271948576 17.85376109806578 12.745271258927659 24.967874923520807 2 15.73694587896324 19.34509638745437 39.65669218278822 25.261265550794178 3 18.98908996793465 23.60926543919395 29.505950676863936 27.895693916007463 4 13.072744813719353 15.666594739905404 36.92702628216065 34.333634164214594 5 14.046323712977562 37.29656466440456 34.754839934395285 13.902271688222587 6 33.60573632382851 35.55234200280862 17.065398679142383 13.776522994220485 7 28.91228860037311 31.824390523635397 21.072490504479642 18.190830371511854 8 26.44742830577983 35.1913289740677 19.862193843747292 18.49904887640518 9 26.779634341953685 15.405456596750419 19.259192158204765 38.55571690309113 10-11 25.52225464482658 25.160966207505446 28.27751173550679 21.039267412161188 12-13 25.99693386049416 22.67204402843325 27.88612850239173 23.444893608680857 14-15 23.130384664554676 24.34305452452937 24.935430555008896 27.591130255907053 16-17 23.441331043662288 27.468395248312262 25.828050748205637 23.262222959819812 18-19 23.4819756266922 26.87257308187204 27.013401247261104 22.632050044174655 20-21 23.971793206923486 26.097232079164247 26.915194302634127 23.015780411278143 22-23 23.80948022323242 25.93457562545184 26.587650822461335 23.668293328854407 24-25 23.622638573625245 26.096675087256838 26.647613555929805 23.63307278318811 26-27 23.483291447111636 26.306855455395024 26.61727666702307 23.59257643047027 28-29 23.626568538964616 26.514839791620975 26.426551091690005 23.432040577724404 30-31 23.908801345758928 26.199779011254563 26.333150065694205 23.5582695772923 32-33 23.573375864408103 26.294065292398088 26.246422192290236 23.886136650903573 34-35 23.93791245877509 26.33079479702232 26.320378959581365 23.410913784621222 36-37 23.963425699302032 26.176015347054797 26.304766523169263 23.555792430473907 38-39 23.83067763502322 26.234614921838794 26.305054328622784 23.6296531145152 40-41 23.99339633531989 26.085634452146994 26.35355377776314 23.567415434769977 42-43 23.760348043706323 26.063977687342447 26.28478384918718 23.890890419764055 44-45 23.717116482742686 26.178039513399128 26.4059273766169 23.69891662724129 46-47 23.91154019017282 26.15262147429858 26.13685040421772 23.798987931310876 48-49 23.643556754167697 26.314055230201234 26.17682718176015 23.865560833870923 50-51 23.790494255090312 26.28321015644651 26.239366499656313 23.686929088806863 52-53 23.981779501710175 26.146201082654002 26.218062165491396 23.653957250144426 54-55 23.525131787954578 25.951292480162653 26.590479724354033 23.933096007528732 56-57 23.562121624527435 26.144485271811384 26.413372276151264 23.880020827509917 58-59 23.638132429530508 26.067685864834605 26.442911783698687 23.851269921936197 60-61 23.648549916085585 26.00379372644206 26.563284309379764 23.78437204809259 62-63 23.627066216744915 26.02160052327856 26.618786067097027 23.7325471928795 64-65 23.41498758367779 25.882006656169583 26.587633376700165 24.115372383452463 66-67 23.398518591873714 26.0856110120816 26.429998361734018 24.08587203431067 68-69 23.603829907274996 25.905573249818993 26.480340520420192 24.01025632248582 70-71 23.49480038829961 25.71558933083716 26.49629891429828 24.293311366564946 72-73 23.464781646729307 25.879392914854098 26.435748056669183 24.22007738174741 74-75 23.418088960170177 25.98918198607366 26.437337200657424 24.155391853098738 76-77 23.44131328345772 25.671321258523072 26.581462794157893 24.30590266386131 78-79 23.388074437712824 25.663449958122676 26.602602507748834 24.34587309641567 80-81 23.498794211297103 25.816641550208487 26.43929227991051 24.245271958583906 82-83 23.432534223542863 25.843100570443333 26.516856508740073 24.207508697273735 84-85 23.383522576600228 25.820322906497793 26.555194793781162 24.240959723120813 86-87 23.377391526083684 25.824224122735746 26.551483174605313 24.246901176575264 88-89 23.268290453357775 25.648542210255393 26.56196235065434 24.521204985732492 90-91 23.25097460873096 25.61189651727482 26.669951415175753 24.467177458818473 92-93 23.329276776751147 25.488464495244568 26.849553623362098 24.33270510464219 94-95 23.223469194793868 25.313665501633203 26.890152524450645 24.572712779122284 96-97 23.25017757283391 25.1801183248132 26.91430853306646 24.65539556928643 98-99 23.105064448515254 25.15562745292576 26.904191947226163 24.835116151332823 100-101 23.248256611605754 24.982869586567677 26.995223053118195 24.773650748708377 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 36.0 1 31.0 2 44.0 3 69.5 4 66.5 5 73.0 6 115.5 7 223.5 8 386.5 9 476.5 10 460.5 11 498.5 12 574.5 13 616.0 14 712.0 15 830.0 16 917.0 17 1025.5 18 1154.5 19 1240.0 20 1350.5 21 1498.5 22 1668.5 23 1872.0 24 2189.0 25 2727.0 26 3528.5 27 4964.5 28 7320.0 29 10798.0 30 15586.5 31 22140.0 32 31123.0 33 38590.0 34 44222.5 35 51395.5 36 60796.5 37 70502.5 38 79439.0 39 87825.0 40 95320.5 41 102656.5 42 109826.0 43 117442.0 44 124682.5 45 132846.5 46 137834.5 47 140644.0 48 143961.5 49 144515.0 50 142524.0 51 139085.0 52 135842.5 53 133127.0 54 130514.5 55 123651.0 56 112654.0 57 101224.0 58 91536.0 59 80677.0 60 66100.0 61 53704.0 62 44287.0 63 33630.0 64 23672.5 65 17033.5 66 12811.5 67 10020.5 68 7653.5 69 5639.5 70 4125.0 71 2962.0 72 2044.0 73 1445.0 74 1108.0 75 776.0 76 518.0 77 345.0 78 229.0 79 168.0 80 137.5 81 110.0 82 83.0 83 78.0 84 70.5 85 63.5 86 59.5 87 49.0 88 41.5 89 39.0 90 27.5 91 25.0 92 27.5 93 24.5 94 22.0 95 16.5 96 15.0 97 12.0 98 8.0 99 5.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.05459272757771458 2 0.07517937065869634 3 0.07292246460241092 4 0.07148902426936479 5 0.068042667723956 6 0.010644056941129826 7 0.01332794522428004 8 0.018207742102734972 9 0.005733761332184548 10-11 0.012794217440699031 12-13 0.023224783268396453 14-15 0.04105129124000213 16-17 0.0279368371291545 18-19 0.011025291072259117 20-21 0.020693388637697957 22-23 0.03826065740013572 24-25 0.03492104641144312 26-27 0.02130336324750482 28-29 0.011467522664369095 30-31 0.01151327076010461 32-33 0.008570143267786478 34-35 0.005001791800416307 36-37 6.099746098068668E-4 38-39 0.0036750970240863722 40-41 0.0012046998543685618 42-43 0.23961327609738242 44-45 0.20803184067463193 46-47 0.21384184883304233 48-49 0.22152752891660882 50-51 0.21263714897867378 52-53 0.22065831509763406 54-55 0.21629699663751495 56-57 0.21930112159081377 58-59 0.22759677628418715 60-61 0.2328578072937714 62-63 0.21791342935350314 64-65 0.21725770664796076 66-67 0.21571752075819844 68-69 0.2101972505394463 70-71 0.20158135917592432 72-73 0.21330812104946134 74-75 0.2124999046914672 76-77 0.20591217890555308 78-79 0.2246231500613787 80-81 0.23573993732510884 82-83 0.23438274381828855 84-85 0.2289387204257623 86-87 0.24973885462017645 88-89 0.24190068088415817 90-91 0.2486713990530144 92-93 0.24363910852210777 94-95 0.24714646252849726 96-97 0.25423741736750205 98-99 0.2474514498334007 100-101 0.25393243006259864 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 3278825.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 61.882550618304975 #Duplication Level Percentage of deduplicated Percentage of total 1 80.10273907741269 49.56961805622868 2 11.213316510652154 13.878172531390137 3 3.609135981446597 6.700276201806446 4 1.6207765193364716 4.011911399951974 5 0.9052963807337303 2.801102455266168 6 0.568734586075557 2.1116848086720834 7 0.3818001850112768 1.653873849252698 8 0.26327814121448684 1.3033858320318983 9 0.20151612528418367 1.1223298640972863 >10 1.061130596537 11.54351896203015 >50 0.05094483195085756 2.1447776848260456 >100 0.019452318851826248 2.0656941888376914 >500 0.0011371354319213139 0.4896753468985442 >1k 7.416100612635193E-4 0.6039788187103245 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.149619147103002E-5 2 0.0 0.0 0.0 3.049873049034334E-5 9.149619147103002E-5 3 0.0 0.0 0.0 3.049873049034334E-5 9.149619147103002E-5 4 0.0 0.0 0.0 3.049873049034334E-5 9.149619147103002E-5 5 0.0 0.0 0.0 3.049873049034334E-5 9.149619147103002E-5 6 0.0 0.0 0.0 3.049873049034334E-5 1.2199492196137336E-4 7 0.0 0.0 0.0 3.049873049034334E-5 1.2199492196137336E-4 8 0.0 0.0 0.0 3.049873049034334E-5 1.524936524517167E-4 9 0.0 0.0 0.0 6.099746098068668E-5 2.1349111343240337E-4 10-11 0.0 0.0 0.0 7.624682622585835E-5 2.1349111343240337E-4 12-13 0.0 0.0 0.0 1.2199492196137336E-4 3.2023667014860507E-4 14-15 0.0 0.0 0.0 1.2199492196137336E-4 3.659847658841201E-4 16-17 0.0 0.0 0.0 1.3724428720654502E-4 4.2698222686480674E-4 18-19 0.0 0.0 0.0 1.524936524517167E-4 4.574809573551501E-4 20-21 0.0 0.0 0.0 1.524936524517167E-4 5.032290530906651E-4 22-23 0.0 0.0 0.0 1.9824174818723172E-4 6.252239750520385E-4 24-25 0.0 0.0 0.0 3.2023667014860507E-4 7.014708012778968E-4 26-27 0.0 0.0 0.0 7.167201665230685E-4 7.167201665230685E-4 28-29 0.0 0.0 0.0 0.002714387013640557 7.319695317682402E-4 30-31 0.0 4.574809573551501E-5 0.0 0.011498021394859437 7.472188970134119E-4 32-33 0.0 6.099746098068668E-5 0.0 0.03400608449673282 8.539644537296135E-4 34-35 0.0 6.099746098068668E-5 0.0 0.0643828200651148 9.149619147103002E-4 36-37 0.0 6.099746098068668E-5 0.0 0.11385176092045168 9.149619147103002E-4 38-39 0.0 6.099746098068668E-5 0.0 0.19575610165226873 9.149619147103002E-4 40-41 0.0 6.099746098068668E-5 0.0 0.2903479142680686 9.149619147103002E-4 42-43 0.0 6.099746098068668E-5 0.0 0.389697528840362 9.149619147103002E-4 44-45 0.0 6.099746098068668E-5 0.0 0.510243761103444 9.454606452006435E-4 46-47 3.049873049034334E-5 6.099746098068668E-5 0.0 0.6498821986534811 9.759593756909869E-4 48-49 3.049873049034334E-5 6.099746098068668E-5 0.0 0.7954831380143801 0.0010979542976523602 50-51 3.049873049034334E-5 6.099746098068668E-5 0.0 0.9559217097588313 0.0011894504891233903 52-53 3.049873049034334E-5 6.099746098068668E-5 0.0 1.1215450656866408 0.001250447950104077 54-55 3.049873049034334E-5 1.2199492196137336E-4 0.0 1.3116894009286864 0.0013571935068202785 56-57 3.049873049034334E-5 1.8299238294206005E-4 0.0 1.5247077840384895 0.0013724428720654502 58-59 3.049873049034334E-5 1.8299238294206005E-4 0.0 1.7487362088553065 0.001387692237310622 60-61 3.049873049034334E-5 1.8299238294206005E-4 0.0 1.985863838417726 0.0014486896982913086 62-63 3.049873049034334E-5 1.8299238294206005E-4 0.0 2.23406250714814 0.0015554352550075103 64-65 3.049873049034334E-5 2.134911134324034E-4 0.0 2.504006770718169 0.0015706846202526818 66-67 3.049873049034334E-5 2.4398984392274672E-4 0.0 2.8192111503358674 0.0016011833507430253 68-69 3.049873049034334E-5 2.4398984392274672E-4 0.0 3.156908343690194 0.001616432715988197 70-71 3.049873049034334E-5 2.4398984392274672E-4 0.0 3.5151921801255024 0.0016774301769688837 72-73 3.049873049034334E-5 2.4398984392274672E-4 0.0 3.8782795666130396 0.0017689263684399137 74-75 3.049873049034334E-5 2.4398984392274672E-4 0.0 4.260596402674739 0.0017994250989302571 76-77 3.049873049034334E-5 2.4398984392274672E-4 0.0 4.688295349706069 0.0018146744641754286 78-79 3.049873049034334E-5 2.4398984392274672E-4 0.0 5.152928259361204 0.0018604225599109438 80-81 4.574809573551501E-5 2.4398984392274672E-4 0.0 5.644705039152745 0.0019061706556464588 82-83 6.099746098068668E-5 2.4398984392274672E-4 0.0 6.1591881237943475 0.001982417481872317 84-85 6.099746098068668E-5 2.4398984392274672E-4 0.0 6.694212103421195 0.0019976668471174885 86-87 6.099746098068668E-5 2.7448857441309004E-4 0.0 7.257782894787004 0.0020434149428530035 88-89 6.099746098068668E-5 2.7448857441309004E-4 0.0 7.870182153667853 0.002073913673343347 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 2410 0.0 46.668842 1 GTATCAA 4320 0.0 38.99782 1 TCAACGC 4735 0.0 34.681534 4 CAACGCA 4965 0.0 33.2646 5 ATCAACG 5105 0.0 32.074425 3 AACGCAG 5360 0.0 30.97468 6 TATCAAC 5375 0.0 30.110048 2 GTACATG 8425 0.0 28.896366 1 TACATGG 8830 0.0 26.659777 2 ACATGGG 8915 0.0 25.926456 3 ACGCAGA 6565 0.0 24.572002 7 CGCAGAG 6780 0.0 23.30437 8 CATGGGG 7705 0.0 23.284197 4 ATGGGGG 4655 0.0 18.861418 5 GCAGAGT 8020 0.0 18.695435 9 GAGTACA 6365 0.0 18.415958 1 TACCGTG 395 1.8189894E-11 18.017334 7 GTATATA 1240 0.0 17.987545 1 GTATAGC 915 0.0 17.115461 1 AGAGTAC 6660 0.0 17.027718 10-11 >>END_MODULE