##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921670_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1808665 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.334873511678502 33.0 31.0 34.0 28.0 34.0 2 31.470642711613262 34.0 31.0 34.0 28.0 34.0 3 31.54097359101879 34.0 31.0 34.0 28.0 34.0 4 35.02790345365228 37.0 35.0 37.0 32.0 37.0 5 34.76986230175295 37.0 35.0 37.0 32.0 37.0 6 34.741943367069084 37.0 35.0 37.0 32.0 37.0 7 34.62566810326954 37.0 35.0 37.0 32.0 37.0 8 34.56738423091064 37.0 35.0 37.0 32.0 37.0 9 36.14869641420606 39.0 37.0 39.0 32.0 39.0 10-11 36.03587148532205 39.0 37.0 39.0 31.0 39.0 12-13 35.95579197916695 39.0 37.0 39.0 31.0 39.0 14-15 37.18008614088291 40.0 38.0 41.0 31.0 41.0 16-17 37.14555957018021 40.0 38.0 41.0 31.0 41.0 18-19 37.105480561629705 40.0 38.0 41.0 31.0 41.0 20-21 37.0418900127995 40.0 37.5 41.0 31.0 41.0 22-23 36.95252852241847 40.0 37.0 41.0 30.5 41.0 24-25 36.86703424901792 40.0 37.0 41.0 30.0 41.0 26-27 36.73491470228041 40.0 37.0 41.0 30.0 41.0 28-29 36.614854879151196 40.0 37.0 41.0 30.0 41.0 30-31 36.45846024554022 40.0 36.5 41.0 30.0 41.0 32-33 36.4071221038722 40.0 36.5 41.0 30.0 41.0 34-35 36.53838328269746 40.0 37.0 41.0 30.0 41.0 36-37 36.531736944099656 40.0 37.0 41.0 30.0 41.0 38-39 36.42790677101619 40.0 37.0 41.0 30.0 41.0 40-41 36.346400521931926 40.0 36.5 41.0 29.5 41.0 42-43 36.22695330533847 40.0 36.0 41.0 29.0 41.0 44-45 36.098082563658835 40.0 36.0 41.0 28.5 41.0 46-47 35.93553891958986 40.0 36.0 41.0 28.0 41.0 48-49 35.78583679122447 40.0 35.0 41.0 27.5 41.0 50-51 35.62845081869777 39.5 35.0 41.0 27.0 41.0 52-53 35.454594963688685 39.0 35.0 41.0 27.0 41.0 54-55 35.23376495923789 39.0 35.0 41.0 26.0 41.0 56-57 35.000854497654345 39.0 35.0 41.0 26.0 41.0 58-59 34.74842273168331 38.0 34.5 40.0 26.0 41.0 60-61 34.46495592052702 38.0 34.0 40.0 25.5 41.0 62-63 34.158021800609845 37.0 34.0 40.0 25.0 41.0 64-65 33.81322273610647 37.0 34.0 40.0 23.5 41.0 66-67 33.460411408414494 36.0 34.0 39.0 23.0 41.0 68-69 33.093669087420835 36.0 33.0 39.0 22.0 40.5 70-71 32.700028750487235 35.0 33.0 38.5 22.0 40.0 72-73 32.34103385646319 35.0 33.0 37.0 21.0 39.5 74-75 31.93903542115317 35.0 32.5 37.0 20.0 39.0 76-77 29.23622976062455 33.0 28.5 34.5 13.0 36.5 78-79 30.809525534026477 34.5 31.5 35.5 16.5 37.0 80-81 30.996275153220743 35.0 32.0 35.5 18.0 37.0 82-83 30.824503432089415 35.0 32.0 35.0 16.5 37.0 84-85 30.635364481537486 35.0 32.0 35.0 13.5 36.0 86-87 30.430246341915172 35.0 32.0 35.0 8.5 36.0 88-89 30.165207487290353 35.0 31.0 35.0 3.5 36.0 90-91 29.96639952672275 34.0 31.0 35.0 2.0 35.0 92-93 29.80797134903368 34.0 31.0 35.0 2.0 35.0 94-95 29.699314411458175 34.0 31.0 35.0 2.0 35.0 96-97 29.49662319998452 34.0 31.0 35.0 2.0 35.0 98-99 29.293806758023184 34.0 31.0 35.0 2.0 35.0 100-101 28.158719276372352 33.0 28.5 34.5 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 33819.0 3 11529.0 4 6443.0 5 4485.0 6 3878.0 7 4082.0 8 4135.0 9 4521.0 10 4975.0 11 5403.0 12 5910.0 13 6089.0 14 6600.0 15 7098.0 16 7530.0 17 7811.0 18 7570.0 19 7091.0 20 6856.0 21 6749.0 22 7083.0 23 8136.0 24 9833.0 25 11519.0 26 13689.0 27 16600.0 28 20194.0 29 24657.0 30 29473.0 31 37233.0 32 46879.0 33 62213.0 34 88088.0 35 130117.0 36 227248.0 37 433279.0 38 438768.0 39 51080.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.03552429149125 19.394925164507388 13.452611572060382 26.116938971940982 2 15.323622671970764 20.796277917690674 37.63101514100179 26.249084269336777 3 17.821698413681446 24.5157769245061 29.155736580877473 28.50678808093498 4 13.210372338807913 16.742224809943483 35.074681746225274 34.97272110502333 5 14.309146764662778 37.28143742378618 34.154354937273084 14.255060874277955 6 33.97063076023967 35.356599232456446 16.666012395037782 14.0067576122661 7 29.033308563669095 31.731432703918472 20.868276252526726 18.366982479885703 8 26.701572706941306 35.01676651010552 19.678934462711446 18.602726320241725 9 26.9183922046285 15.252316213689337 18.99342221298274 38.83586936869942 10-11 25.832504990798345 25.144054160049606 27.82434381165897 21.19909703749308 12-13 26.229543545798293 22.506260162916284 27.577310040201052 23.686886251084367 14-15 23.489993558500153 24.225955650411787 24.557043213340815 27.727007577747244 16-17 23.847229862909934 27.22170772365253 25.417531715381237 23.5135306980563 18-19 23.894631731898432 26.722576450215303 26.570444557974334 22.812347259911935 20-21 24.409709158171214 25.848202277538086 26.449005024981155 23.29308353930955 22-23 24.29825313145331 25.547544736034588 26.220361426798217 23.933840705713884 24-25 24.114120224210932 25.768969631560267 26.13689517176862 23.980014972460182 26-27 23.862089785451438 26.03016181197565 26.211875795326968 23.895872607245945 28-29 24.002075691408717 26.25387464239387 25.93989452347013 23.804155142727286 30-31 24.413057399159676 25.885418452360543 25.76904190219393 23.93248224628585 32-33 24.114426387509944 25.94320595052162 25.755392819195922 24.186974842772514 34-35 24.363860157059552 25.99165821576722 25.867327698417352 23.777153928755876 36-37 24.37130860478669 25.913995260417185 25.921542542897868 23.793153591898257 38-39 24.318406117219055 25.948337586009572 25.831981046794183 23.901275249977193 40-41 24.409380248398264 25.75659181543608 25.900848037487815 23.933179898677835 42-43 24.219870793368088 25.80519143366721 25.699993668781033 24.274944104183664 44-45 24.14573127592416 25.796085806049753 25.852485498505544 24.20569741952054 46-47 24.22951028149 25.75517392001504 25.788127768040297 24.227188030454663 48-49 24.002021586071404 25.88819014410436 25.843428822309995 24.26635944751424 50-51 24.09935127083572 25.87220151574715 25.890060504928364 24.13838670848877 52-53 24.318210971434638 25.726270358018027 25.770419943559304 24.18509872698803 54-55 23.819875201158027 25.65743876239536 26.072071040957034 24.45061499548958 56-57 23.892646581099108 25.778284640001104 25.85428632646996 24.474782452429828 58-59 24.00095775562246 25.6805414968913 25.906211282991627 24.41228946449461 60-61 24.034207920970005 25.692240957220193 26.07205250014031 24.201498621669497 62-63 24.00405800996585 25.699679058860227 26.014481753471745 24.28178117770218 64-65 23.76504295616991 25.51207930540019 26.002718552391592 24.720159186038313 66-67 23.80086334851542 25.691367565955765 25.86195164562326 24.645817439905553 68-69 23.803244120525935 25.62203592390392 25.937973557267462 24.636746398302684 70-71 23.697455187634063 25.459686713166 25.87316270544476 24.969695393755174 72-73 23.718176327700863 25.685613753312893 25.745566587466982 24.85064333151926 74-75 23.624424009007914 25.73111866686429 25.756281979528676 24.888175344599123 76-77 23.611568656515853 25.40228053867371 25.947382201491454 25.038768603318985 78-79 23.50851457239828 25.489986672506383 25.996885179091134 25.004613576004203 80-81 23.672851561419446 25.57761399308003 25.79194056835823 24.957593877142298 82-83 23.549976537485964 25.59302644862705 25.868714445027898 24.98828256885909 84-85 23.50668000159311 25.565277710168914 25.852978010647288 25.075064277590688 86-87 23.41125041044294 25.667379530328795 25.769924567019004 25.151445492209263 88-89 23.181093306924634 25.504839069204177 25.87269039383491 25.441377230036277 90-91 23.206084816571604 25.39096160862916 25.948167157783132 25.454786417016106 92-93 23.27368869709573 25.30150306917304 25.992644384449154 25.43216384928207 94-95 23.164426460248997 25.197822617233108 26.0353115548978 25.6024393676201 96-97 22.980202303948065 25.116904697062488 26.137548436685666 25.76534456230378 98-99 22.77883918680986 25.07131682695617 26.098461591199424 26.05138239503454 100-101 22.750817247551712 25.117317354675073 26.098152640417986 26.033712757355225 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 25.0 1 20.5 2 26.0 3 37.5 4 39.5 5 44.0 6 65.0 7 156.0 8 237.5 9 245.5 10 209.0 11 176.5 12 174.0 13 190.5 14 212.0 15 236.5 16 288.5 17 313.5 18 326.0 19 391.5 20 434.0 21 474.0 22 576.5 23 674.5 24 798.0 25 996.5 26 1321.5 27 1860.5 28 2842.5 29 4335.5 30 6537.0 31 9546.5 32 13543.5 33 16892.5 34 19739.0 35 23592.5 36 28710.0 37 33756.0 38 38559.5 39 43671.5 40 48262.0 41 52607.0 42 56665.5 43 60959.5 44 65213.5 45 70028.5 46 74035.5 47 76923.5 48 79724.5 49 81362.0 50 81953.5 51 81900.5 52 81510.0 53 80956.5 54 79457.0 55 75340.5 56 69326.0 57 62194.5 58 55786.0 59 49080.5 60 40520.0 61 33102.0 62 26930.0 63 20453.0 64 14417.5 65 10173.0 66 7412.0 67 5708.5 68 4297.0 69 3041.0 70 2217.0 71 1566.5 72 1050.0 73 748.0 74 531.0 75 345.5 76 236.5 77 141.0 78 78.0 79 46.0 80 30.5 81 19.5 82 12.0 83 13.0 84 8.0 85 5.0 86 3.0 87 1.5 88 1.0 89 1.0 90 1.5 91 2.0 92 2.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.16426480304534008 2 0.0 3 0.011113169105389887 4 0.006855885418250478 5 0.02377444136973956 6 0.0021009971443025654 7 5.5289398534278047E-5 8 0.0 9 1.1057879706855609E-4 10-11 0.046332515971725004 12-13 3.317363912056683E-4 14-15 0.004423151882742243 16-17 0.0 18-19 0.0020457077457682877 20-21 8.293409780141707E-5 22-23 0.0 24-25 6.081833838770585E-4 26-27 0.0029579828215838756 28-29 0.006137123237304863 30-31 0.017195002944160473 32-33 0.012080733579739752 34-35 0.00989680233763577 36-37 0.0037043897017966293 38-39 0.0 40-41 0.004284928386406549 42-43 0.009205684855957295 44-45 0.007989318088203178 46-47 0.004146704890070854 48-49 0.01017324933030716 50-51 0.0028750487237824583 52-53 0.0022668653399054 54-55 0.004119060190803714 56-57 0.008431633276477401 58-59 0.014955782303522212 60-61 0.007547002899928954 62-63 0.021535220729101297 64-65 0.03967014344834449 66-67 0.058164447258060505 68-69 0.048184710822623315 70-71 0.06546264786458521 72-73 0.03190198295427843 74-75 0.02637304310085063 76-77 0.2237838405674904 78-79 0.08285116370361566 80-81 0.0631957825246798 82-83 0.025516057423569317 84-85 0.04870996010869896 86-87 0.06449508339023534 88-89 0.2885553709503971 90-91 0.2925362076448651 92-93 0.051446785336145724 94-95 0.00903981666035446 96-97 0.013684126137233818 98-99 5.805386846099194E-4 100-101 1.382234963356951E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 1808665.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 64.17223863695816 #Duplication Level Percentage of deduplicated Percentage of total 1 80.44583214922383 51.623891380286715 2 11.022952113986516 14.147350270850104 3 3.4579629080832377 6.657156628058019 4 1.597919028915422 4.101681649843876 5 0.9221816742436073 2.958923123309519 6 0.5949256709307097 2.2906627275730767 7 0.3867912003588544 1.7374880048472732 8 0.2834932378756488 1.455391657033606 9 0.21827996138043498 1.2606762394234154 >10 1.0303674610301925 11.078153214922521 >50 0.03013363980291392 1.2883421756326743 >100 0.008297006624554905 1.0350346690104724 >500 8.639475440615655E-4 0.3652482592087877 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 5.5289398534278047E-5 0.0 0.0 0.0 6 0.0 5.5289398534278047E-5 0.0 0.0 5.5289398534278047E-5 7 0.0 5.5289398534278047E-5 0.0 0.0 5.5289398534278047E-5 8 0.0 5.5289398534278047E-5 0.0 0.0 5.5289398534278047E-5 9 0.0 5.5289398534278047E-5 0.0 0.0 5.5289398534278047E-5 10-11 0.0 5.5289398534278047E-5 0.0 0.0 5.5289398534278047E-5 12-13 0.0 5.5289398534278047E-5 0.0 0.0 5.5289398534278047E-5 14-15 0.0 5.5289398534278047E-5 0.0 0.0 5.5289398534278047E-5 16-17 0.0 5.5289398534278047E-5 0.0 2.7644699267139023E-5 5.5289398534278047E-5 18-19 0.0 5.5289398534278047E-5 0.0 1.1057879706855609E-4 1.1057879706855609E-4 20-21 0.0 5.5289398534278047E-5 0.0 1.1057879706855609E-4 1.1057879706855609E-4 22-23 0.0 5.5289398534278047E-5 0.0 1.1057879706855609E-4 1.3822349633569513E-4 24-25 0.0 5.5289398534278047E-5 0.0 3.3173639120566824E-4 1.6586819560283415E-4 26-27 0.0 5.5289398534278047E-5 0.0 8.293409780141707E-4 1.6586819560283415E-4 28-29 0.0 5.5289398534278047E-5 0.0 0.0028197593252481806 1.6586819560283415E-4 30-31 0.0 5.5289398534278047E-5 0.0 0.012771851061418227 1.6586819560283415E-4 32-33 0.0 5.5289398534278047E-5 0.0 0.04096944431390003 1.6586819560283415E-4 34-35 0.0 5.5289398534278047E-5 0.0 0.07624408057876941 1.6586819560283415E-4 36-37 0.0 5.5289398534278047E-5 0.0 0.13028946764602622 1.6586819560283415E-4 38-39 0.0 5.5289398534278047E-5 0.0 0.22320330188288046 1.6586819560283415E-4 40-41 0.0 5.5289398534278047E-5 0.0 0.3251293080808221 1.6586819560283415E-4 42-43 0.0 1.1057879706855609E-4 0.0 0.4365374461273923 1.6586819560283415E-4 44-45 0.0 1.1057879706855609E-4 0.0 0.5743739166733475 1.6586819560283415E-4 46-47 0.0 1.1057879706855609E-4 0.0 0.736150696784645 1.6586819560283415E-4 48-49 0.0 1.1057879706855609E-4 0.0 0.9056127032922072 1.6586819560283415E-4 50-51 0.0 1.1057879706855609E-4 0.0 1.074577105212961 1.6586819560283415E-4 52-53 0.0 1.1057879706855609E-4 0.0 1.2566727392856056 1.6586819560283415E-4 54-55 0.0 1.1057879706855609E-4 0.0 1.4643120754810868 1.6586819560283415E-4 56-57 0.0 1.1057879706855609E-4 0.0 1.7019182656821468 1.6586819560283415E-4 58-59 0.0 1.1057879706855609E-4 0.0 1.9504717567929937 1.6586819560283415E-4 60-61 0.0 1.1057879706855609E-4 0.0 2.2088944055422095 2.2115759413711219E-4 62-63 5.5289398534278047E-5 1.3822349633569513E-4 0.0 2.481830521406673 2.2115759413711219E-4 64-65 5.5289398534278047E-5 1.6586819560283415E-4 0.0 2.7787345915357458 2.2115759413711219E-4 66-67 5.5289398534278047E-5 1.6586819560283415E-4 0.0 3.1228558080130924 2.2115759413711219E-4 68-69 5.5289398534278047E-5 1.6586819560283415E-4 0.0 3.4831491735617153 2.2115759413711219E-4 70-71 5.5289398534278047E-5 1.6586819560283415E-4 0.0 3.8851031009059165 2.2115759413711219E-4 72-73 5.5289398534278047E-5 1.6586819560283415E-4 0.0 4.290097945169504 2.764469926713902E-4 74-75 5.5289398534278047E-5 1.6586819560283415E-4 0.0 4.721576411331009 2.764469926713902E-4 76-77 5.5289398534278047E-5 1.6586819560283415E-4 0.0 5.206851462266368 2.764469926713902E-4 78-79 5.5289398534278047E-5 1.6586819560283415E-4 0.0 5.7349757970657915 2.764469926713902E-4 80-81 5.5289398534278047E-5 1.6586819560283415E-4 0.0 6.291435948614033 2.764469926713902E-4 82-83 5.5289398534278047E-5 1.6586819560283415E-4 0.0 6.862741303668727 2.764469926713902E-4 84-85 5.5289398534278047E-5 1.6586819560283415E-4 0.0 7.472445146005478 2.764469926713902E-4 86-87 5.5289398534278047E-5 1.6586819560283415E-4 0.0 8.118418833780716 2.764469926713902E-4 88-89 5.5289398534278047E-5 1.6586819560283415E-4 0.0 8.812411364182974 2.764469926713902E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 1420 0.0 50.549534 1 GTATCAA 2540 0.0 45.66513 1 TCAACGC 3305 0.0 34.604206 4 ATCAACG 3440 0.0 33.247112 3 CAACGCA 3460 0.0 32.944195 5 TATCAAC 3515 0.0 32.94275 2 AACGCAG 3720 0.0 30.89357 6 GTACATG 5315 0.0 28.173176 1 TACATGG 5525 0.0 26.627153 2 ACGCAGA 4515 0.0 24.716888 7 ACATGGG 5920 0.0 24.690184 3 CATGGGG 5125 0.0 23.519232 4 CGCAGAG 4760 0.0 23.1454 8 CCGAACG 125 2.2600449E-4 22.794859 9 ATGGGGG 3065 0.0 22.313915 5 TATTCCG 205 6.8412373E-7 20.851265 5 ACCGTCG 120 0.0047715176 19.786655 8 GCAGAGT 5450 0.0 19.169989 9 GTATAGG 360 9.458745E-11 18.486475 1 AGAGTAC 4515 0.0 17.617844 10-11 >>END_MODULE