##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921668_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3759639 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.46660942712851 33.0 31.0 34.0 29.0 34.0 2 31.591640846368495 34.0 31.0 34.0 29.0 34.0 3 31.671572456823647 34.0 31.0 34.0 29.0 34.0 4 35.136976183085665 37.0 35.0 37.0 33.0 37.0 5 34.88606858264849 37.0 35.0 37.0 32.0 37.0 6 34.866276256842745 37.0 35.0 37.0 32.0 37.0 7 34.7504946618545 37.0 35.0 37.0 32.0 37.0 8 34.69613651736244 37.0 35.0 37.0 32.0 37.0 9 36.30729705697808 39.0 37.0 39.0 32.0 39.0 10-11 36.201430243701594 39.0 37.0 39.0 32.0 39.0 12-13 36.12056051126186 39.0 37.0 39.0 32.0 39.0 14-15 37.39047884650627 40.0 38.0 41.0 32.0 41.0 16-17 37.35615786515673 40.0 38.0 41.0 32.0 41.0 18-19 37.308113092773 40.0 38.0 41.0 31.5 41.0 20-21 37.24882455469794 40.0 38.0 41.0 31.0 41.0 22-23 37.16224536451505 40.0 38.0 41.0 31.0 41.0 24-25 37.08441102988877 40.0 38.0 41.0 31.0 41.0 26-27 36.962889389114224 40.0 37.0 41.0 30.5 41.0 28-29 36.848291950370765 40.0 37.0 41.0 30.0 41.0 30-31 36.70044424477989 40.0 37.0 41.0 30.0 41.0 32-33 36.65719341670836 40.0 37.0 41.0 30.0 41.0 34-35 36.79914840228011 40.0 37.0 41.0 30.0 41.0 36-37 36.8050683855551 40.0 37.0 41.0 30.0 41.0 38-39 36.70654190468819 40.0 37.0 41.0 30.0 41.0 40-41 36.631210469941394 40.0 37.0 41.0 30.0 41.0 42-43 36.51707836842846 40.0 37.0 41.0 30.0 41.0 44-45 36.40118984828065 40.0 37.0 41.0 29.5 41.0 46-47 36.259671340785644 40.0 36.0 41.0 29.0 41.0 48-49 36.121577497201194 40.0 36.0 41.0 28.5 41.0 50-51 35.969330965020845 40.0 36.0 41.0 28.0 41.0 52-53 35.79758269344477 39.5 35.0 41.0 28.0 41.0 54-55 35.585249408254356 39.0 35.0 41.0 28.0 41.0 56-57 35.364259706849516 39.0 35.0 41.0 27.0 41.0 58-59 35.123628890965335 39.0 35.0 41.0 26.5 41.0 60-61 34.846032823896124 38.0 35.0 40.0 26.0 41.0 62-63 34.54142259403097 37.5 34.5 40.0 26.0 41.0 64-65 34.203870637579826 37.0 34.0 40.0 26.0 41.0 66-67 33.84943434728707 36.5 34.0 39.5 25.5 41.0 68-69 33.48375402531998 36.0 34.0 39.0 25.0 41.0 70-71 33.08390898700647 35.5 33.5 39.0 24.0 40.0 72-73 32.720000909661806 35.0 33.0 37.5 23.0 40.0 74-75 32.31557431444881 35.0 33.0 37.0 22.5 39.0 76-77 29.603438122649543 33.0 29.0 34.5 17.5 36.5 78-79 31.17656096768865 34.5 31.5 36.0 19.5 37.5 80-81 31.35270779987121 35.0 32.0 36.0 20.0 37.0 82-83 31.17451130281391 35.0 32.0 35.0 20.0 37.0 84-85 30.972337769663525 35.0 32.0 35.0 19.0 36.5 86-87 30.76440730080734 35.0 32.0 35.0 18.0 36.0 88-89 30.496223972567577 35.0 32.0 35.0 12.5 36.0 90-91 30.29891061349241 35.0 32.0 35.0 8.5 35.0 92-93 30.141267685541084 34.0 32.0 35.0 4.5 35.0 94-95 30.03964715761274 34.0 32.0 35.0 2.0 35.0 96-97 29.84503565368909 34.0 31.0 35.0 2.0 35.0 98-99 29.64633107061609 34.0 31.0 35.0 2.0 35.0 100-101 28.523603994958027 33.5 29.0 34.5 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 66534.0 3 23688.0 4 12952.0 5 8976.0 6 7810.0 7 7715.0 8 7906.0 9 8682.0 10 9359.0 11 10531.0 12 10976.0 13 11620.0 14 12372.0 15 13359.0 16 13996.0 17 14730.0 18 14432.0 19 13481.0 20 13077.0 21 12909.0 22 13733.0 23 15621.0 24 18355.0 25 22001.0 26 26385.0 27 32013.0 28 38621.0 29 46554.0 30 56870.0 31 71011.0 32 90465.0 33 119089.0 34 170278.0 35 255248.0 36 458151.0 37 910941.0 38 990718.0 39 128478.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.888870416669334 18.39196309250532 11.666112500079928 27.05305399074542 2 15.840391443503776 20.238039824737747 36.56938474948153 27.352183982276944 3 18.427583198221985 23.395070020708946 28.828129052509215 29.349217728559857 4 12.883044088789914 15.451571810434189 35.09331697607405 36.572067124701846 5 13.882870265921445 37.25861360724335 34.84456344527263 14.01395268156258 6 35.143069477057495 35.248161226863054 15.923674290584142 13.685095005495306 7 29.776324209937233 31.249285170540354 20.448803847604477 18.525586771917936 8 27.402178773015173 35.09895497945414 19.080847921835048 18.41801832569563 9 26.68943126971267 14.491129199140982 18.42464620263972 40.39479332850663 10-11 26.118092376234948 24.923362647062618 27.774249556688225 21.184295420014205 12-13 26.20961371198762 22.17369794368063 27.61229163508111 24.004396709250646 14-15 23.153634451241693 23.900779010952807 24.363373704081173 28.582212833724324 16-17 23.933055806687822 27.131527787641314 25.241346310111158 23.69407009555971 18-19 23.984385504404944 26.573023314949644 26.275543554226154 23.167047626419258 20-21 24.268262532714317 25.806764787124692 26.303888108153185 23.62108457200781 22-23 24.02500612425821 25.706829831268372 26.08968573844457 24.17847830602885 24-25 23.861614884892745 25.86681540494475 26.13337131585499 24.138198394307516 26-27 23.84571107559853 26.026361175717057 26.095797788242404 24.03212996044201 28-29 23.925877583287573 26.24770593516915 25.90672334725255 23.91969313429072 30-31 24.119522722097248 25.96988973616275 25.85803770380507 24.05254983793493 32-33 23.823982340881322 26.057960343063176 25.863157791131126 24.25489952492438 34-35 24.094927294124158 26.032478235055024 26.008258017011876 23.864336453808946 36-37 24.18877380839017 25.913527192755197 25.997820451369254 23.89987854748538 38-39 24.051125653287457 26.016620212738513 25.958822110314316 23.97343202365972 40-41 24.131471545925386 25.888098847042517 26.000094959297172 23.98033464773492 42-43 23.932570416376777 25.866720648354836 25.94451439689761 24.256194538370778 44-45 23.890006765781983 25.926391430878432 26.11601154824686 24.067590255092725 46-47 24.091946037109363 25.887845209594495 25.917423536235244 24.102785217060894 48-49 23.82459183563538 26.022460827486388 25.981575561730168 24.171371775148064 50-51 23.845036686717904 26.02489403609755 26.02293900708465 24.10713027009989 52-53 24.11696706884908 25.897090386110545 25.935858107214894 24.050084437825486 54-55 23.55748117493815 25.79862709846008 26.304960017108737 24.338931709493032 56-57 23.664606938312822 25.911173433348022 26.108616344814994 24.315603283524165 58-59 23.701451839240228 25.81952767007402 26.120523273987274 24.35849721669848 60-61 23.704607720449804 25.826448616763493 26.21984072527364 24.249102937513058 62-63 23.713864722327642 25.829202038570987 26.173114120308572 24.2838191187928 64-65 23.427674462169882 25.711164046168456 26.204889006680038 24.656272484981628 66-67 23.476308932904246 25.89203884384042 26.037810371656178 24.593841851599155 68-69 23.682431349057076 25.7313180137429 26.064465016105142 24.52178562109488 70-71 23.444946402702723 25.60053660513408 26.08553075930558 24.868986232857615 72-73 23.455369735162147 25.757981927290093 25.935694380345893 24.85095395720187 74-75 23.40377499853003 25.779531635826487 25.963551041073856 24.853142324569628 76-77 23.364906059620054 25.51337727486187 26.13424342693269 24.987473238585384 78-79 23.305157560132354 25.525259230379838 26.165453546179485 25.004129663308316 80-81 23.409170094252968 25.629149402305075 25.933486593220103 25.02819391022186 82-83 23.308611053243098 25.641995736125047 25.98958961068262 25.059803599949237 84-85 23.227271426889136 25.580056059234106 25.99576994290953 25.19690257096722 86-87 23.12601442729208 25.704995360716904 25.94859099409483 25.22039921789619 88-89 23.055613616970646 25.47392231751705 25.98560382219148 25.484860243320828 90-91 23.012045733796498 25.405785329792664 26.068680198380235 25.513488738030603 92-93 23.002670327166975 25.350463807672575 26.140078539660504 25.506787325499946 94-95 22.869147467460436 25.169341388088647 26.252211200578834 25.709299943872082 96-97 22.812932828190593 25.013277886987723 26.254768633567426 25.919020651254254 98-99 22.64066605942194 25.044974810515306 26.211028314281464 26.10333081578129 100-101 22.618500611429443 24.978797794731268 26.249879476252 26.15282211758729 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 16.0 1 23.0 2 47.5 3 64.5 4 52.5 5 65.5 6 126.5 7 240.0 8 356.5 9 383.0 10 348.5 11 314.0 12 327.0 13 372.0 14 399.0 15 422.0 16 472.5 17 524.0 18 604.0 19 696.0 20 768.0 21 891.5 22 1116.0 23 1438.0 24 1811.0 25 2335.5 26 3065.0 27 4199.5 28 6026.0 29 8888.0 30 13083.5 31 18802.5 32 27751.0 33 34983.5 34 40301.5 35 48402.0 36 58533.0 37 69118.0 38 80087.5 39 90481.0 40 99924.5 41 109705.5 42 119381.5 43 129822.0 44 139649.5 45 149922.5 46 156766.0 47 161266.0 48 167900.0 49 171354.0 50 170932.0 51 170205.5 52 169537.5 53 168412.0 54 164392.5 55 155105.0 56 142564.5 57 127783.5 58 114002.0 59 99754.0 60 82294.5 61 67096.0 62 54236.5 63 40756.0 64 29238.5 65 21146.0 66 15531.0 67 11965.5 68 9033.5 69 6532.5 70 4786.5 71 3404.0 72 2424.0 73 1696.5 74 1174.5 75 764.0 76 480.0 77 307.0 78 171.5 79 101.5 80 56.0 81 34.0 82 26.0 83 18.5 84 11.0 85 7.0 86 8.5 87 9.0 88 5.5 89 3.0 90 4.0 91 3.0 92 2.0 93 2.0 94 1.0 95 0.0 96 0.0 97 0.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.1663723564948656 2 4.255727744073301E-4 3 0.010479729569780504 4 0.006596378003313617 5 0.02486940900442835 6 0.0017820859928306947 7 2.659829840045813E-5 8 0.0 9 2.659829840045813E-5 10-11 0.04903396310124457 12-13 2.3938468560412315E-4 14-15 0.00512017244208819 16-17 0.0 18-19 0.0014762055612254261 20-21 2.2608553640389412E-4 22-23 0.0 24-25 3.9897447600687196E-4 26-27 0.002526838348043522 28-29 0.005572343514895978 30-31 0.017421885452300074 32-33 0.011916037683405243 34-35 0.010187148287375464 36-37 0.0038567532680664285 38-39 0.0 40-41 0.0035508728364611604 42-43 0.009030122306955534 44-45 0.0074608227013285055 46-47 0.0034444796428593277 48-49 0.009003524008555077 50-51 0.0027662230336476454 52-53 0.001808684291231153 54-55 0.004149334550471468 56-57 0.008631147830948663 58-59 0.01633135521788129 60-61 0.007593814193330797 62-63 0.022063288523180017 64-65 0.04189231998072156 66-67 0.0635566340278947 68-69 0.05289071636931099 70-71 0.07145632865283078 72-73 0.03512305303780496 74-75 0.028406982691689283 76-77 0.23059394798277175 78-79 0.08722911960430244 80-81 0.06974073840600122 82-83 0.028885752062897528 84-85 0.05336948574051924 86-87 0.06896938775238794 88-89 0.2982600191135372 90-91 0.30275513154321465 92-93 0.0544467168257378 94-95 0.00981477210976905 96-97 0.015147730939060904 98-99 9.176412948158054E-4 100-101 1.7288893960297784E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 3759639.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.84398321543173 #Duplication Level Percentage of deduplicated Percentage of total 1 76.27070961608014 43.35530937245527 2 12.80249036796869 14.554890951850775 3 4.455013462964246 7.59722131539786 4 2.076209063671762 4.720799726683396 5 1.1085024086548823 3.150584615592189 6 0.7046070675662427 2.403160339332604 7 0.49554921074181807 1.9718293712479844 8 0.3527615142176965 1.6041895674592819 9 0.25956880066152427 1.327943209324809 >10 1.3825960727889337 13.781555841742454 >50 0.06991134004683767 2.680138435969254 >100 0.020392073300774298 1.8981488796960142 >500 0.0010790842036861106 0.4307895803887848 >1k 6.099171328064407E-4 0.523438792859285 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.659829840045813E-5 2 0.0 0.0 0.0 0.0 2.659829840045813E-5 3 0.0 0.0 0.0 0.0 2.659829840045813E-5 4 0.0 0.0 0.0 0.0 2.659829840045813E-5 5 0.0 0.0 0.0 0.0 2.659829840045813E-5 6 0.0 0.0 0.0 0.0 5.319659680091626E-5 7 0.0 2.659829840045813E-5 0.0 0.0 5.319659680091626E-5 8 2.659829840045813E-5 5.319659680091626E-5 0.0 0.0 5.319659680091626E-5 9 2.659829840045813E-5 5.319659680091626E-5 0.0 0.0 5.319659680091626E-5 10-11 2.659829840045813E-5 5.319659680091626E-5 0.0 1.3299149200229065E-5 5.319659680091626E-5 12-13 2.659829840045813E-5 5.319659680091626E-5 0.0 2.659829840045813E-5 7.979489520137439E-5 14-15 2.659829840045813E-5 7.979489520137439E-5 0.0 3.9897447600687195E-5 1.0639319360183252E-4 16-17 2.659829840045813E-5 1.0639319360183252E-4 0.0 5.319659680091626E-5 1.3299149200229063E-4 18-19 2.659829840045813E-5 1.0639319360183252E-4 0.0 9.309404440160346E-5 1.5958979040274878E-4 20-21 2.659829840045813E-5 1.0639319360183252E-4 0.0 1.5958979040274878E-4 1.5958979040274878E-4 22-23 2.659829840045813E-5 1.0639319360183252E-4 0.0 2.260855364038941E-4 1.7288893960297784E-4 24-25 2.659829840045813E-5 1.0639319360183252E-4 0.0 3.590770284061847E-4 1.861880888032069E-4 26-27 2.659829840045813E-5 1.0639319360183252E-4 0.0 7.314532060125985E-4 1.861880888032069E-4 28-29 2.659829840045813E-5 1.0639319360183252E-4 0.0 0.005758531603699185 1.861880888032069E-4 30-31 2.659829840045813E-5 1.0639319360183252E-4 0.0 0.024071460052414607 1.9948723800343595E-4 32-33 3.9897447600687195E-5 1.0639319360183252E-4 0.0 0.05810398285580079 2.1278638720366504E-4 34-35 5.319659680091626E-5 1.0639319360183252E-4 0.0 0.10152570499454867 2.3938468560412315E-4 36-37 5.319659680091626E-5 1.0639319360183252E-4 0.0 0.17304852939338058 2.3938468560412315E-4 38-39 5.319659680091626E-5 1.1969234280206158E-4 0.0 0.2936851117886584 2.6598298400458127E-4 40-41 5.319659680091626E-5 1.3299149200229063E-4 0.0 0.42889756170738735 2.6598298400458127E-4 42-43 5.319659680091626E-5 1.3299149200229063E-4 0.0 0.5675677904181757 2.6598298400458127E-4 44-45 5.319659680091626E-5 1.3299149200229063E-4 0.0 0.7336209673322358 2.6598298400458127E-4 46-47 5.319659680091626E-5 1.3299149200229063E-4 0.0 0.9293844435596077 2.6598298400458127E-4 48-49 5.319659680091626E-5 1.3299149200229063E-4 0.0 1.134975991045949 3.723761776064138E-4 50-51 5.319659680091626E-5 1.5958979040274878E-4 0.0 1.3566196116169664 3.723761776064138E-4 52-53 5.319659680091626E-5 1.5958979040274878E-4 0.0 1.5770663087599632 3.989744760068719E-4 54-55 5.319659680091626E-5 2.3938468560412315E-4 0.0 1.8199353714545465 4.521710728077882E-4 56-57 5.319659680091626E-5 2.3938468560412315E-4 0.0 2.100308034893776 4.654702220080173E-4 58-59 6.649574600114532E-5 2.6598298400458127E-4 0.0 2.4000442595685385 4.787693712082463E-4 60-61 7.979489520137439E-5 2.9258128240503944E-4 0.0 2.722708217464496 4.787693712082463E-4 62-63 7.979489520137439E-5 2.9258128240503944E-4 0.0 3.0544687934134105 5.053676696087045E-4 64-65 7.979489520137439E-5 3.5907702840618476E-4 0.0 3.395379184012082 5.053676696087045E-4 66-67 7.979489520137439E-5 4.521710728077882E-4 0.0 3.7822913316943465 5.053676696087045E-4 68-69 9.309404440160346E-5 4.521710728077882E-4 0.0 4.207106054597263 5.053676696087045E-4 70-71 1.0639319360183252E-4 4.521710728077882E-4 0.0 4.659277127405051 5.186668188089335E-4 72-73 1.0639319360183252E-4 4.521710728077882E-4 0.0 5.1303329920771645 6.915557584119113E-4 74-75 1.0639319360183252E-4 4.521710728077882E-4 0.0 5.60091008737807 6.915557584119113E-4 76-77 1.0639319360183252E-4 4.521710728077882E-4 0.0 6.116105828245743 6.915557584119113E-4 78-79 1.0639319360183252E-4 4.521710728077882E-4 0.0 6.70286429095985 7.048549076121404E-4 80-81 1.0639319360183252E-4 4.787693712082463E-4 0.0 7.311154076229127 7.447523552128277E-4 82-83 1.0639319360183252E-4 4.787693712082463E-4 0.0 7.94005754275876 8.777438472151182E-4 84-85 1.0639319360183252E-4 4.787693712082463E-4 0.0 8.569798855688006 8.777438472151182E-4 86-87 1.0639319360183252E-4 4.787693712082463E-4 0.0 9.234543529312255 9.309404440160344E-4 88-89 1.0639319360183252E-4 4.787693712082463E-4 0.0 9.959812630946749 0.001010735339217409 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 2480 0.0 39.108242 1 GTATCAA 3805 0.0 38.10965 1 TCAACGC 4150 0.0 33.052124 4 CAACGCA 4230 0.0 32.567387 5 ATCAACG 4465 0.0 30.721565 3 AACGCAG 4630 0.0 29.850828 6 TATCAAC 4860 0.0 29.00595 2 GTACATG 8670 0.0 28.73439 1 TACATGG 8725 0.0 27.417765 2 ACATGGG 8805 0.0 26.306158 3 CATGGGG 7630 0.0 23.637888 4 ACGCAGA 5910 0.0 22.822523 7 ATACCGT 375 0.0 21.530891 6 CGCAGAG 6335 0.0 20.841597 8 GAGTACA 6285 0.0 19.89483 1 ATGGGGG 4685 0.0 19.467804 5 CCCTATA 600 0.0 17.40357 2 CATACCG 305 9.283394E-8 17.132399 5 TATACCG 305 9.283394E-8 17.132399 5 GCACCGT 820 0.0 16.796877 6 >>END_MODULE