##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921666_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2950875 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.385678146312536 31.0 31.0 34.0 26.0 34.0 2 30.419336976320583 31.0 31.0 34.0 26.0 34.0 3 30.490320667598592 33.0 31.0 34.0 26.0 34.0 4 33.93457228788071 37.0 35.0 37.0 30.0 37.0 5 33.93354852374296 37.0 35.0 37.0 30.0 37.0 6 33.988843309187956 37.0 35.0 37.0 30.0 37.0 7 33.89344652009997 37.0 35.0 37.0 30.0 37.0 8 33.865466005845725 37.0 35.0 37.0 29.0 37.0 9 35.42504036938196 39.0 37.0 39.0 30.0 39.0 10-11 35.330767484220786 39.0 36.0 39.0 29.0 39.0 12-13 35.213678315753796 39.0 35.0 39.0 29.0 39.0 14-15 36.37132867369848 40.0 37.0 41.0 28.0 41.0 16-17 36.31059804295336 40.0 37.0 41.0 28.0 41.0 18-19 36.265108315330195 40.0 37.0 41.0 27.0 41.0 20-21 36.18480687931546 40.0 37.0 41.0 27.0 41.0 22-23 36.087022323886984 40.0 36.5 41.0 27.0 41.0 24-25 35.98171220400728 40.0 36.0 41.0 27.0 41.0 26-27 35.84025721184395 40.0 36.0 41.0 27.0 41.0 28-29 35.70946312534417 40.0 36.0 41.0 26.5 41.0 30-31 35.56572372601347 40.0 36.0 41.0 25.5 41.0 32-33 35.39723234633795 39.5 35.5 41.0 25.0 41.0 34-35 35.23274537213538 39.0 35.0 41.0 25.0 41.0 36-37 35.21120243995425 39.0 35.0 41.0 24.5 41.0 38-39 35.40040479518787 40.0 35.0 41.0 25.0 41.0 40-41 35.46284796882281 40.0 35.0 41.0 25.0 41.0 42-43 35.30506832719109 40.0 35.0 41.0 24.0 41.0 44-45 35.192194179692464 40.0 35.0 41.0 24.0 41.0 46-47 35.0399178209853 40.0 35.0 41.0 23.0 41.0 48-49 34.878659041809634 39.5 35.0 41.0 23.0 41.0 50-51 33.180511712627606 37.0 32.5 39.5 18.5 40.0 52-53 33.295544033549376 37.5 33.5 39.5 19.0 40.0 54-55 34.20778870673953 39.0 34.0 40.5 20.0 41.0 56-57 34.22851594865929 39.0 34.0 41.0 20.0 41.0 58-59 34.03495522514508 38.0 34.0 41.0 19.5 41.0 60-61 33.77950472317533 38.0 34.0 40.0 18.0 41.0 62-63 33.48826144787563 37.0 34.0 40.0 17.5 41.0 64-65 33.19469784385987 37.0 33.5 40.0 14.0 41.0 66-67 32.85500995467446 36.0 33.0 39.0 12.5 41.0 68-69 32.49729741178464 36.0 33.0 39.0 9.0 41.0 70-71 32.093693057144066 35.0 32.5 39.0 7.0 40.5 72-73 31.740621849451436 35.0 32.0 37.5 4.0 40.0 74-75 31.353024611344093 35.0 32.0 37.0 2.0 39.0 76-77 30.988668106917437 35.0 32.0 36.5 2.0 39.0 78-79 30.657537679501843 35.0 32.0 36.0 2.0 38.5 80-81 30.35268843986953 35.0 31.0 36.0 2.0 37.0 82-83 30.04874232219257 35.0 31.0 35.0 2.0 37.0 84-85 29.793295039606896 35.0 31.0 35.0 2.0 36.5 86-87 29.56753301986699 35.0 31.0 35.0 2.0 36.0 88-89 29.354060236370568 35.0 31.0 35.0 2.0 36.0 90-91 29.13879001990935 35.0 30.5 35.0 2.0 35.5 92-93 28.949659846655653 34.0 30.0 35.0 2.0 35.0 94-95 28.72596026602279 34.0 30.0 35.0 2.0 35.0 96-97 28.49653407887491 34.0 30.0 35.0 2.0 35.0 98-99 28.235788876180795 34.0 30.0 35.0 2.0 35.0 100-101 27.17860414283899 33.0 27.5 35.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 102518.0 3 17786.0 4 12049.0 5 9258.0 6 8196.0 7 8330.0 8 9048.0 9 9495.0 10 10388.0 11 10909.0 12 10971.0 13 10916.0 14 11245.0 15 11985.0 16 11957.0 17 12198.0 18 12030.0 19 11690.0 20 11797.0 21 12503.0 22 13526.0 23 15820.0 24 18419.0 25 21857.0 26 25957.0 27 31146.0 28 36380.0 29 43592.0 30 52298.0 31 63753.0 32 79328.0 33 102552.0 34 142790.0 35 207418.0 36 352748.0 37 639069.0 38 670717.0 39 118220.0 40 16.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.76865593202524 16.5565399599231 10.693954220111008 25.98084988794065 2 17.062286262322345 18.68604826249327 37.342286859193926 26.90937861599046 3 20.73279786763247 21.563634452249786 28.26397543436645 29.43959224575129 4 13.35069407941812 13.84676061229016 35.396490366583265 37.40605494170845 5 14.305978211846826 36.78824473319583 34.44482800950307 14.460949045454269 6 36.02204327314137 33.99283525839163 15.780834824575674 14.20428664389133 7 30.908149919114607 30.57965999326887 19.46895936275937 19.04323072485715 8 28.326974224510153 34.05152793166667 18.707710683540082 18.913787160283096 9 26.884044292058086 14.62838993088728 18.033088565476447 40.45447721157818 10-11 26.787003414338866 24.52896087372369 27.042434870316807 21.641600841620633 12-13 26.740748750252525 21.589752002917773 27.170347326075962 24.49915192075374 14-15 23.376091955192017 23.46210077474046 23.900196545577977 29.261610724489547 16-17 24.259145545178544 26.7918936467827 24.898031613970783 24.050929194067976 18-19 24.31604369891214 26.115654890573094 26.010928795066963 23.55737261544781 20-21 24.385107959464104 25.4301464880889 26.303760260911357 23.880985291535634 22-23 24.21660867911441 25.32884756138697 26.027986579297174 24.426557180201446 24-25 24.122121438017373 25.53113411553809 26.05234405483366 24.294400391610875 26-27 23.9833824195856 25.73470917200548 25.959791868415174 24.322116539993743 28-29 24.150657550798034 25.941029288780925 25.778499304786507 24.129813855634534 30-31 24.235498907141423 25.732455883185295 25.713103355714708 24.318941853958577 32-33 23.948665477984697 25.763342932488133 25.789235909763654 24.49875567976352 34-35 24.3235242435267 25.767716338630407 25.890720403237793 24.0180390146051 36-37 24.359523527119304 25.550434620533068 25.910076757544438 24.179965094803194 38-39 24.15949010989905 25.758081791650845 25.91988792015328 24.162540178296833 40-41 24.363061426023965 25.570160842663466 26.021863649395392 24.044914081917177 42-43 24.145710795821863 25.534048029468607 25.912764188143576 24.40747698656595 44-45 24.09772852049445 25.724681106360354 26.085073614868087 24.09251675827711 46-47 24.267056376987693 25.628778848617202 25.914202723954265 24.189962050440844 48-49 24.106401864652423 25.76642878584342 25.844343357922806 24.282825991581355 50-51 24.126822709315533 25.848000176562362 25.951509862875554 24.073667251246547 52-53 24.359761237636192 25.625408221875073 25.928742436381906 24.086088104106828 54-55 23.7782154980362 25.63081122029217 26.304074929619357 24.28689835205227 56-57 23.918707907966848 25.83296108725397 26.065290179613616 24.183040825165566 58-59 23.995914721943006 25.604386834741504 26.152095954793666 24.24760248852183 60-61 23.872658101248305 25.734307888103363 26.29913986400495 24.09389414664338 62-63 23.95462684053418 25.66776717563084 26.23523727156629 24.142368712268688 64-65 23.713710797406605 25.62544524285387 26.260126409921558 24.400717549817962 66-67 23.759051338412206 25.709884177841964 26.10605398741051 24.42501049633532 68-69 24.01491296751145 25.499181385987203 26.23795421873122 24.247951427770133 70-71 23.855130322921905 25.441382397531637 26.17502652835313 24.52846075119333 72-73 23.868180292542206 25.64661769402096 26.10578505718031 24.379416956256524 74-75 23.803313422016082 25.7463433433187 26.157817491004252 24.29252574366096 76-77 23.944960529547963 25.44558635618151 26.20122978795571 24.40822332631482 78-79 23.864077050081058 25.549394760773787 26.193176685844065 24.39335150330109 80-81 23.983266232869767 25.702270921496616 25.980351951822833 24.334110893810777 82-83 23.957129643670218 25.741741694827873 26.028614991549514 24.272513669952392 84-85 23.89049111239968 25.74421607689088 26.06830764162981 24.296985169079623 86-87 23.899488028118544 25.867979662423956 26.013456712001297 24.219075597456207 88-89 23.836507027309565 25.653114481387902 26.008152266666713 24.502226224635823 90-91 23.833919443991096 25.733770520312397 26.015551986489704 24.416758049206802 92-93 23.987006677180833 25.600048772510377 26.170391655825032 24.242552894483765 94-95 23.998948424572898 25.37180459989525 26.24998556461381 24.379261410918044 96-97 23.988545382070544 25.210621523927507 26.274679509661375 24.526153584340577 98-99 23.90305023769056 25.26275710184623 26.176140323704793 24.658052336758416 100-101 24.118042284513184 25.175460824562272 26.25266562543946 24.453831265485086 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 18.0 1 19.5 2 43.0 3 74.0 4 71.5 5 73.0 6 128.0 7 240.0 8 384.0 9 435.0 10 392.0 11 366.5 12 407.5 13 492.0 14 549.5 15 629.5 16 712.5 17 812.5 18 905.0 19 983.5 20 1084.5 21 1215.0 22 1358.5 23 1539.0 24 1811.0 25 2200.5 26 2760.0 27 3645.5 28 4992.0 29 7101.5 30 10283.5 31 14794.0 32 22525.0 33 27698.5 34 30947.0 35 37066.0 36 45273.0 37 53901.5 38 61688.0 39 69486.5 40 76316.5 41 83009.0 42 89425.5 43 96438.5 44 103160.0 45 111483.5 46 118310.0 47 122125.5 48 126605.5 49 129918.0 50 130667.5 51 130623.0 52 130901.0 53 130715.5 54 129036.0 55 122873.0 56 113581.5 57 103447.0 58 94344.5 59 83281.0 60 69278.0 61 57626.5 62 47380.5 63 36341.0 64 26402.5 65 19267.0 66 14409.0 67 11142.5 68 8573.0 69 6451.5 70 4921.0 71 3643.0 72 2579.5 73 1888.5 74 1453.0 75 1110.5 76 845.5 77 579.5 78 366.0 79 253.0 80 179.0 81 133.0 82 111.0 83 85.5 84 74.5 85 66.0 86 56.5 87 48.5 88 43.0 89 41.5 90 37.0 91 25.5 92 19.5 93 17.0 94 11.0 95 8.0 96 9.5 97 12.5 98 12.0 99 8.0 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.05235735163299022 2 0.07343584530012284 3 0.06913203710763756 4 0.07038590248655059 5 0.065505993984835 6 0.01067479984750286 7 0.013690854407590968 8 0.017418562290845936 9 0.0063709916550175796 10-11 0.012775871563519295 12-13 0.023010124115728385 14-15 0.03990341847757021 16-17 0.027737535476765367 18-19 0.010878129368407676 20-21 0.020366840343965773 22-23 0.037412631846486216 24-25 0.03415935951200915 26-27 0.021214046681069177 28-29 0.011606726818316601 30-31 0.012064218240352437 32-33 0.009082051933748465 34-35 0.0054051764307197015 36-37 8.472063371034016E-4 38-39 0.004117422798322531 40-41 0.0013894183928495785 42-43 0.21869784385987207 44-45 0.19024865505993985 46-47 0.19592493751853265 48-49 0.20275342059558604 50-51 0.19451857499894099 52-53 0.201245393315542 54-55 0.19716185877070358 56-57 0.20043207523192272 58-59 0.2085822001948575 60-61 0.2129029525140848 62-63 0.1990596009658152 64-65 0.19834794764264835 66-67 0.1965349260812471 68-69 0.19157029694582117 70-71 0.18440293133392638 72-73 0.19524717244884993 74-75 0.19426441309780998 76-77 0.18877451603337994 78-79 0.20634557546490448 80-81 0.21720676070657008 82-83 0.21585123056720462 84-85 0.2095141271656712 86-87 0.22935569958063284 88-89 0.2216461219129919 90-91 0.22872876689117635 92-93 0.2234421993476511 94-95 0.2277629516668785 96-97 0.23415088744863813 98-99 0.2274240691320371 100-101 0.2342694963358326 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 2950875.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 58.835214206647656 #Duplication Level Percentage of deduplicated Percentage of total 1 78.05526691398596 45.923983488414216 2 12.099138279551306 14.23710784786503 3 3.9280563643310105 6.933241128336018 4 1.8846293423529856 4.4353028422988565 5 1.0320151850414603 3.035941723821372 6 0.6445987256251534 2.2755062459692796 7 0.4356287571929681 1.7941217870816786 8 0.32948213944174415 1.5508121801055657 9 0.2405344165368368 1.2736704528914227 >10 1.2680565614174883 13.161019546016812 >50 0.06233164007114772 2.4903944004726033 >100 0.018526953219458697 1.7755984764727013 >500 0.0010408327397601993 0.43968609141654036 >1k 6.938884928334036E-4 0.6736137888377897 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 3.3888253484136064E-5 5 0.0 0.0 0.0 0.0 3.3888253484136064E-5 6 0.0 0.0 0.0 0.0 1.3555301393654426E-4 7 0.0 0.0 0.0 0.0 1.3555301393654426E-4 8 0.0 0.0 0.0 0.0 1.3555301393654426E-4 9 0.0 0.0 0.0 0.0 1.3555301393654426E-4 10-11 0.0 0.0 0.0 0.0 1.3555301393654426E-4 12-13 0.0 0.0 0.0 0.0 3.558266615834286E-4 14-15 0.0 0.0 3.3888253484136064E-5 3.3888253484136064E-5 4.405472952937688E-4 16-17 0.0 0.0 3.3888253484136064E-5 3.3888253484136064E-5 4.405472952937688E-4 18-19 0.0 0.0 3.3888253484136064E-5 6.777650696827213E-5 5.42212055746177E-4 20-21 0.0 0.0 3.3888253484136064E-5 1.3555301393654426E-4 6.269326894565172E-4 22-23 0.0 0.0 3.3888253484136064E-5 1.3555301393654426E-4 8.810945905875376E-4 24-25 3.3888253484136064E-5 0.0 3.3888253484136064E-5 2.3721777438895242E-4 9.488710975558097E-4 26-27 3.3888253484136064E-5 0.0 3.3888253484136064E-5 3.727707883254967E-4 0.001084424111492354 28-29 3.3888253484136064E-5 0.0 3.3888253484136064E-5 0.0035752107425763542 0.001084424111492354 30-31 3.3888253484136064E-5 0.0 3.3888253484136064E-5 0.014910831533019867 0.001084424111492354 32-33 3.3888253484136064E-5 0.0 3.3888253484136064E-5 0.034904901088660144 0.001084424111492354 34-35 3.3888253484136064E-5 0.0 3.3888253484136064E-5 0.05982971152624222 0.0011522006184606262 36-37 3.3888253484136064E-5 1.6944126742068032E-5 3.3888253484136064E-5 0.10180031346634473 0.0012199771254288983 38-39 3.3888253484136064E-5 3.3888253484136064E-5 3.3888253484136064E-5 0.17825221332655566 0.0012369212521709662 40-41 3.3888253484136064E-5 3.3888253484136064E-5 3.3888253484136064E-5 0.2664463930190198 0.0013046977591392385 42-43 3.3888253484136064E-5 3.3888253484136064E-5 3.3888253484136064E-5 0.3543186343033846 0.0013216418858813064 44-45 3.3888253484136064E-5 3.3888253484136064E-5 3.3888253484136064E-5 0.4610496886516711 0.0013555301393654426 46-47 3.3888253484136064E-5 3.3888253484136064E-5 3.3888253484136064E-5 0.5842673783199899 0.0014063625195916466 48-49 3.3888253484136064E-5 3.3888253484136064E-5 3.3888253484136064E-5 0.7205828779599271 0.0014233066463337147 50-51 3.3888253484136064E-5 3.3888253484136064E-5 3.3888253484136064E-5 0.8757402465370441 0.0014910831533019866 52-53 3.3888253484136064E-5 3.3888253484136064E-5 3.3888253484136064E-5 1.0314398271699072 0.0015758037870123268 54-55 3.3888253484136064E-5 3.3888253484136064E-5 3.3888253484136064E-5 1.2006269326894565 0.001660524420722667 56-57 3.3888253484136064E-5 3.3888253484136064E-5 3.3888253484136064E-5 1.4009403990341847 0.001660524420722667 58-59 3.3888253484136064E-5 3.3888253484136064E-5 3.3888253484136064E-5 1.6162833057991275 0.001660524420722667 60-61 3.3888253484136064E-5 3.3888253484136064E-5 3.3888253484136064E-5 1.8470284237726098 0.001660524420722667 62-63 3.3888253484136064E-5 3.3888253484136064E-5 3.3888253484136064E-5 2.085245901639344 0.0017283009276909391 64-65 3.3888253484136064E-5 3.3888253484136064E-5 3.3888253484136064E-5 2.3311051806667513 0.0017283009276909391 66-67 3.3888253484136064E-5 3.3888253484136064E-5 3.3888253484136064E-5 2.615834286440463 0.001745245054433007 68-69 6.777650696827213E-5 3.3888253484136064E-5 3.3888253484136064E-5 2.937942135807176 0.001762189181175075 70-71 6.777650696827213E-5 3.3888253484136064E-5 3.3888253484136064E-5 3.2819417969246407 0.0018299656881433472 72-73 6.777650696827213E-5 3.3888253484136064E-5 3.3888253484136064E-5 3.638734273732368 0.002219680603210912 74-75 6.777650696827213E-5 3.3888253484136064E-5 3.3888253484136064E-5 3.9913415512348034 0.002270512983437116 76-77 6.777650696827213E-5 3.3888253484136064E-5 3.3888253484136064E-5 4.380937857415173 0.002270512983437116 78-79 6.777650696827213E-5 3.3888253484136064E-5 3.3888253484136064E-5 4.820129622569577 0.0023044012369212523 80-81 6.777650696827213E-5 3.3888253484136064E-5 3.3888253484136064E-5 5.292260770110561 0.00232134536366332 82-83 6.777650696827213E-5 3.3888253484136064E-5 3.3888253484136064E-5 5.789045622061253 0.0024399542508577966 84-85 1.0166476045240818E-4 3.3888253484136064E-5 3.3888253484136064E-5 6.2841868937179655 0.002490786631084 86-87 1.0166476045240818E-4 3.3888253484136064E-5 3.3888253484136064E-5 6.797407548608463 0.002626339645020545 88-89 1.0166476045240818E-4 3.3888253484136064E-5 3.3888253484136064E-5 7.368966831871902 0.002728004405472953 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 1955 0.0 35.93148 1 GTATCAA 2790 0.0 34.704525 1 TCAACGC 2795 0.0 33.7968 4 CAACGCA 2935 0.0 31.859062 5 GTACATG 7050 0.0 30.161224 1 AACGCAG 3145 0.0 29.863928 6 ATCAACG 3205 0.0 29.17564 3 GAGTACA 4700 0.0 28.882069 1 TACATGG 7290 0.0 28.19356 2 ACATGGG 7510 0.0 26.671947 3 TATCAAC 3565 0.0 26.363024 2 CATGGGG 6430 0.0 24.214035 4 AGTACAT 5250 0.0 24.140236 2 ACGCAGA 4010 0.0 23.07021 7 CGCAGAG 4195 0.0 21.601177 8 ATGGGGG 3740 0.0 20.052122 5 TACACTG 2835 0.0 18.919088 5 GTGTAGC 1745 0.0 18.223824 1 GTGTACA 2860 0.0 17.923294 1 GTATAGA 895 0.0 17.500523 1 >>END_MODULE