##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921665_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2777851 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.22726704924058 33.0 31.0 34.0 28.0 34.0 2 31.376383398533616 34.0 31.0 34.0 28.0 34.0 3 31.443416511540757 34.0 31.0 34.0 28.0 34.0 4 34.92477242299893 37.0 35.0 37.0 32.0 37.0 5 34.65353109292039 37.0 35.0 37.0 32.0 37.0 6 34.61931147494952 37.0 35.0 37.0 32.0 37.0 7 34.491039656194665 37.0 35.0 37.0 31.0 37.0 8 34.43299442626692 37.0 35.0 37.0 31.0 37.0 9 36.00558705272529 39.0 37.0 39.0 31.0 39.0 10-11 35.894536100028404 39.0 37.0 39.0 30.0 39.0 12-13 35.8066418969196 39.0 37.0 39.0 30.0 39.0 14-15 37.017031871039876 40.0 37.0 41.0 31.0 41.0 16-17 36.979572878458924 40.0 37.0 41.0 31.0 41.0 18-19 36.933072184217224 40.0 37.0 41.0 30.5 41.0 20-21 36.86965553588007 40.0 37.0 41.0 30.0 41.0 22-23 36.774287389784405 40.0 37.0 41.0 30.0 41.0 24-25 36.67901392119303 40.0 37.0 41.0 30.0 41.0 26-27 36.54584191160721 40.0 37.0 41.0 30.0 41.0 28-29 36.41762949128661 40.0 37.0 41.0 29.5 41.0 30-31 36.257065983740674 40.0 36.0 41.0 29.0 41.0 32-33 36.20267177757194 40.0 36.0 41.0 28.5 41.0 34-35 36.326930062123566 40.0 37.0 41.0 29.5 41.0 36-37 36.31213697206942 40.0 37.0 41.0 29.0 41.0 38-39 36.20227560801497 40.0 36.0 41.0 29.0 41.0 40-41 36.11110315132093 40.0 36.0 41.0 28.0 41.0 42-43 35.98361215198368 40.0 36.0 41.0 28.0 41.0 44-45 35.8457860050809 40.0 35.5 41.0 27.0 41.0 46-47 35.68046396296994 40.0 35.0 41.0 27.0 41.0 48-49 35.53072896998435 40.0 35.0 41.0 26.0 41.0 50-51 35.3696090971042 39.0 35.0 41.0 26.0 41.0 52-53 35.18153313478656 39.0 35.0 41.0 26.0 41.0 54-55 34.96125188140041 39.0 35.0 41.0 25.0 41.0 56-57 34.72329005407418 39.0 35.0 41.0 24.5 41.0 58-59 34.47390644782604 38.0 34.0 40.0 24.0 41.0 60-61 34.18740026012914 38.0 34.0 40.0 23.0 41.0 62-63 33.878232669786826 37.0 34.0 40.0 22.5 41.0 64-65 33.536696712674654 36.5 34.0 40.0 22.0 41.0 66-67 33.18384697379378 36.0 33.5 39.0 21.5 41.0 68-69 32.816594014581774 35.5 33.0 39.0 20.5 40.5 70-71 32.42003350791673 35.0 33.0 38.5 19.5 40.0 72-73 32.06168149407581 35.0 33.0 37.0 18.0 39.5 74-75 31.658502021886704 35.0 32.0 37.0 16.5 39.0 76-77 28.976727873453257 32.0 28.0 34.5 9.0 36.5 78-79 30.54238672268599 34.5 31.0 35.5 10.0 37.0 80-81 30.72733256751352 35.0 32.0 35.0 9.0 37.0 82-83 30.560733639061276 35.0 32.0 35.0 7.0 37.0 84-85 30.366372782413457 35.0 32.0 35.0 4.5 36.0 86-87 30.15700986122006 35.0 31.0 35.0 2.0 36.0 88-89 29.892744607252155 34.5 31.0 35.0 2.0 35.5 90-91 29.698501467501316 34.0 31.0 35.0 2.0 35.0 92-93 29.533145946272857 34.0 31.0 35.0 2.0 35.0 94-95 29.42124991585222 34.0 31.0 35.0 2.0 35.0 96-97 29.205646379161443 34.0 31.0 35.0 2.0 35.0 98-99 28.99418111338585 34.0 31.0 35.0 2.0 35.0 100-101 27.869754173279993 33.0 28.0 34.5 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 58490.0 3 20062.0 4 11207.0 5 7843.0 6 6787.0 7 6901.0 8 7120.0 9 7545.0 10 8255.0 11 8847.0 12 9463.0 13 9834.0 14 10685.0 15 11091.0 16 12210.0 17 12677.0 18 12006.0 19 11271.0 20 10663.0 21 10957.0 22 11206.0 23 12673.0 24 14994.0 25 17928.0 26 21333.0 27 26144.0 28 31111.0 29 37616.0 30 45744.0 31 56626.0 32 72148.0 33 94822.0 34 135295.0 35 202392.0 36 351778.0 37 662435.0 38 656716.0 39 72973.0 40 3.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.903742897084484 19.58953360451125 13.290506405108943 26.216217093295324 2 15.443219154978657 21.09644627655879 36.89386060499372 26.56647396346883 3 17.886663875248825 24.79034663865168 28.94283869913208 28.380150786967416 4 13.264141596692506 16.664014584770378 34.913554130551546 35.158289687985565 5 14.405039680825016 37.25719800083539 33.98244969681257 14.355312621527027 6 34.06698240768607 35.29514681381408 16.579031493942697 14.058839284557154 7 29.10480079745098 31.558388120889134 21.020241906423344 18.31656917523654 8 26.973440980095763 34.57698055079268 19.765134991041634 18.684443478069916 9 26.99838832248382 15.10775775950546 18.967000029879213 38.926853888131504 10-11 25.94581103012203 25.069385767579828 27.70807986728644 21.276723335011702 12-13 26.27601033609591 22.54676118621748 27.475486331456334 23.70174214623027 14-15 23.585923705734825 24.10646125012173 24.53471039316443 27.77290465097902 16-17 23.977725947144034 27.068946462571247 25.37884501364544 23.57448257663928 18-19 23.97502568116974 26.561142423708432 26.548326588520073 22.91550530660176 20-21 24.43373309209091 25.721963308208313 26.37203627852124 23.472267321179537 22-23 24.33849043739207 25.476258445827366 26.151582644281497 24.033668472499066 24-25 24.19855808674159 25.70059006341985 26.03885685157192 24.061994998266638 26-27 23.95770502054431 25.877963903863392 26.096484004382642 24.067847071209652 28-29 24.03499661140207 26.079261690662857 25.949909952397626 23.935831745537445 30-31 24.35382004715988 25.805665882108954 25.79958096912861 24.040933101602565 32-33 24.130509333474947 25.879004609356787 25.653748286455187 24.336737770713075 34-35 24.44822434691224 25.875612566517574 25.784363264748443 23.891799821821742 36-37 24.476231774021358 25.743902893422206 25.856566770402395 23.923298562154045 38-39 24.419524301339415 25.81358755383208 25.67686315788716 24.090024986941344 40-41 24.429372307288 25.67554164742899 25.84555319453407 24.049532850748943 42-43 24.32157987149305 25.641535674953097 25.657196716725593 24.379687736828252 44-45 24.12813057291075 25.643377273693584 25.829288721306177 24.39920343208949 46-47 24.319467194671944 25.630168301683014 25.673854738547387 24.37650976509765 48-49 24.05563859073529 25.712047917549096 25.77454781629278 24.45776567542283 50-51 24.089843081327817 25.74083984078633 25.830407881987625 24.338909195898232 52-53 24.358226901397423 25.562636518026455 25.742779563268314 24.336357017307808 54-55 23.842188377233995 25.444810230801814 26.02272827501742 24.690273116946774 56-57 23.884475031825854 25.545611776429862 25.85724592600273 24.712667265741555 58-59 23.99931446886549 25.35930526604207 25.90902634596243 24.73235391913001 60-61 23.93232796857179 25.504098455086922 26.04464882317024 24.518924753171046 62-63 23.94696723105906 25.473235529643564 25.99032717091353 24.589470068383847 64-65 23.65330764852362 25.29071426783617 25.976212740234633 25.07976534340558 66-67 23.797956221206455 25.421993134574585 25.737078700251782 25.042971943967178 68-69 23.820285016337973 25.420568826124185 25.715417660496144 25.043728497041695 70-71 23.677394173792713 25.255081410455343 25.78454340567117 25.28298101008078 72-73 23.664988736676627 25.54843319078401 25.61539554332144 25.17118252921793 74-75 23.61320837095498 25.573182840748586 25.625287507393047 25.188321280903388 76-77 23.62954181141739 25.29358134789277 25.729664515053653 25.347212325636185 78-79 23.542284871814456 25.398791860805304 25.770831862131182 25.28809140524906 80-81 23.705051876814068 25.51440492282643 25.463451183742354 25.31709201661715 82-83 23.587406241785466 25.550756367276538 25.522777439694067 25.339059951243932 84-85 23.50430575032285 25.513625886762703 25.558971374175364 25.423096988739086 86-87 23.39597004043216 25.6738993547569 25.427070094898863 25.503060509912075 88-89 23.273697961653355 25.471688406491676 25.54611303264918 25.708500599205784 90-91 23.25779926134541 25.42747752472186 25.579223223049024 25.735499990883703 92-93 23.300962656061973 25.302038877229027 25.590814084954477 25.80618438175452 94-95 23.17734590046276 25.241943163495634 25.632735309201752 25.947975626839852 96-97 23.064032011054884 25.226222003873744 25.632462985822613 26.077282999248762 98-99 22.816611689640858 25.20997527923805 25.560267072067482 26.413145959053608 100-101 22.859380458927447 25.222613992529823 25.56201359578364 26.35599195275909 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 45.0 1 42.5 2 65.5 3 98.0 4 89.5 5 93.0 6 165.5 7 307.5 8 455.0 9 486.5 10 395.0 11 325.0 12 325.0 13 363.5 14 400.0 15 415.0 16 463.0 17 517.0 18 582.0 19 659.0 20 720.5 21 822.0 22 938.5 23 1122.0 24 1306.0 25 1517.5 26 1969.0 27 2547.5 28 3371.0 29 4760.5 30 6947.5 31 10451.5 32 15977.5 33 21650.0 34 27575.0 35 34531.0 36 43116.0 37 52005.0 38 60338.0 39 68361.0 40 74712.0 41 80992.0 42 87892.5 43 95181.0 44 102274.5 45 110144.5 46 115658.5 47 119577.5 48 123886.5 49 125682.5 50 125228.0 51 124315.5 52 123195.0 53 122218.0 54 119749.5 55 112973.5 56 103962.0 57 94121.0 58 84761.5 59 74090.5 60 61572.0 61 51010.5 62 42506.5 63 33012.5 64 24013.0 65 18169.5 66 13994.5 67 11153.0 68 8946.5 69 6810.5 70 5185.0 71 3920.5 72 2935.0 73 2261.0 74 1753.0 75 1317.0 76 942.5 77 578.5 78 336.0 79 197.0 80 108.0 81 63.0 82 45.5 83 28.0 84 20.5 85 14.0 86 12.0 87 8.5 88 7.5 89 6.0 90 3.0 91 2.5 92 1.0 93 1.0 94 1.0 95 0.5 96 0.5 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.16264371271173292 2 1.439962042600557E-4 3 0.010439724808854038 4 0.005723849119337214 5 0.024875344285924625 6 0.0016919554000556546 7 0.0 8 0.0 9 0.0 10-11 0.04841872368244373 12-13 4.679876638451811E-4 14-15 0.005237861929959526 16-17 0.0 18-19 0.0013499644149380222 20-21 3.2399145958512536E-4 22-23 0.0 24-25 5.03986714910195E-4 26-27 0.0026819293043435373 28-29 0.005525854338479638 30-31 0.017639535021856823 32-33 0.012545669296157354 34-35 0.010637719589711615 36-37 0.004301886602269165 38-39 0.0 40-41 0.003545906529903872 42-43 0.009287755174773593 44-45 0.006641824921495069 46-47 0.0036359041575664062 48-49 0.008873766087525933 50-51 0.0026819293043435373 52-53 0.0021059444873033147 54-55 0.004373884704399192 56-57 0.008459777000278272 58-59 0.015929580096268665 60-61 0.007883792183238049 62-63 0.021131442975163176 64-65 0.04004894430982799 66-67 0.058354461776387576 68-69 0.04836472510584621 70-71 0.06571626771918292 72-73 0.03302912935215028 74-75 0.026945289722162924 76-77 0.22074618113066538 78-79 0.08434577664532764 80-81 0.06492428859575261 82-83 0.027395277860475596 84-85 0.05002068145483685 86-87 0.06634625111282066 88-89 0.285634470675353 90-91 0.29107032738617006 92-93 0.05291860506557047 94-95 0.010349727181191504 96-97 0.015677586738813566 98-99 8.639772255603342E-4 100-101 1.6199572979256268E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 2777851.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.19517755912001 #Duplication Level Percentage of deduplicated Percentage of total 1 76.16411866710061 42.80056172131606 2 12.672275331141877 14.242415246231483 3 4.401880809749474 7.42093421093864 4 2.1075045838119753 4.73726377175893 5 1.1470979076715078 3.2230685299647717 6 0.7390487565333819 2.491858565894415 7 0.5126284821216941 2.0165074002283543 8 0.35986822779442346 1.6178287167034777 9 0.28879681825060677 1.4606089632091586 >10 1.519375793916803 14.987556962597576 >50 0.06668932866159968 2.513839751012824 >100 0.01936695294822613 1.8143557742660748 >500 9.631002127498881E-4 0.3728616565501952 >1k 3.852400850594457E-4 0.3003387293281292 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 3.5999051065013924E-5 0.0 0.0 0.0 3.5999051065013924E-5 6 3.5999051065013924E-5 0.0 0.0 0.0 3.5999051065013924E-5 7 3.5999051065013924E-5 0.0 0.0 0.0 3.5999051065013924E-5 8 3.5999051065013924E-5 0.0 0.0 0.0 3.5999051065013924E-5 9 3.5999051065013924E-5 0.0 0.0 0.0 1.0799715319504178E-4 10-11 1.0799715319504178E-4 0.0 0.0 0.0 1.0799715319504178E-4 12-13 1.0799715319504178E-4 0.0 0.0 0.0 3.599905106501393E-4 14-15 1.2599667872754874E-4 0.0 0.0 0.0 3.779900361826462E-4 16-17 1.6199572979256265E-4 0.0 0.0 0.0 3.959895617151532E-4 18-19 1.7999525532506964E-4 0.0 0.0 3.5999051065013924E-5 4.6798766384518103E-4 20-21 1.7999525532506964E-4 0.0 0.0 3.5999051065013924E-5 4.85987189377688E-4 22-23 1.7999525532506964E-4 0.0 0.0 8.999762766253482E-5 6.659824447027575E-4 24-25 1.7999525532506964E-4 0.0 0.0 2.3399383192259052E-4 7.559800723652924E-4 26-27 1.979947808575766E-4 0.0 0.0 7.919791234303064E-4 7.559800723652924E-4 28-29 2.1599430639008356E-4 0.0 0.0 0.00325791412138376 7.739795978977994E-4 30-31 2.1599430639008356E-4 0.0 0.0 0.014021630389822924 8.099786489628133E-4 32-33 2.1599430639008356E-4 0.0 0.0 0.043540852263134346 8.279781744953203E-4 34-35 2.3399383192259052E-4 0.0 0.0 0.08799968032842653 8.819767510928412E-4 36-37 2.519933574550975E-4 0.0 0.0 0.16300370322238306 8.999762766253482E-4 38-39 2.519933574550975E-4 0.0 0.0 0.28675044125836846 9.179758021578551E-4 40-41 2.519933574550975E-4 0.0 0.0 0.42205287468622327 9.359753276903621E-4 42-43 2.519933574550975E-4 0.0 0.0 0.5676690362442046 9.359753276903621E-4 44-45 2.519933574550975E-4 0.0 0.0 0.7478442868245994 9.539748532228691E-4 46-47 2.519933574550975E-4 0.0 0.0 0.9616066520486519 0.0010259729553528968 48-49 2.519933574550975E-4 0.0 0.0 1.1848187681772708 0.0010799715319504178 50-51 2.519933574550975E-4 0.0 0.0 1.419010594880719 0.0010799715319504178 52-53 2.699928829876044E-4 0.0 0.0 1.6568383257417334 0.0010799715319504178 54-55 2.879924085201114E-4 0.0 0.0 1.929855129018799 0.0010799715319504178 56-57 2.879924085201114E-4 0.0 0.0 2.2462507888292063 0.0010799715319504178 58-59 2.879924085201114E-4 0.0 0.0 2.576704078080502 0.0010799715319504178 60-61 3.059919340526184E-4 0.0 0.0 2.923932925128094 0.0010799715319504178 62-63 3.239914595851253E-4 0.0 0.0 3.285489394499561 0.0010799715319504178 64-65 3.239914595851253E-4 0.0 0.0 3.676151096657092 0.0011159705830154317 66-67 3.239914595851253E-4 0.0 0.0 4.1253832548974 0.0011159705830154317 68-69 3.779900361826462E-4 0.0 0.0 4.603432653515253 0.0011159705830154317 70-71 4.319886127801671E-4 0.0 0.0 5.106735386455213 0.0011699691596129525 72-73 4.6798766384518103E-4 0.0 0.0 5.6278396501468215 0.001331964889405515 74-75 4.6798766384518103E-4 3.5999051065013924E-5 0.0 6.169445373419957 0.0013679639404705292 76-77 5.219862404427019E-4 3.5999051065013924E-5 0.0 6.7696215527758685 0.0013679639404705292 78-79 5.399857659752089E-4 5.399857659752089E-5 0.0 7.439707889300038 0.0013859634660030361 80-81 5.399857659752089E-4 7.199810213002785E-5 0.0 8.127793751356714 0.001493960619198078 82-83 5.399857659752089E-4 7.199810213002785E-5 0.0 8.846586803971848 0.0016559563489906405 84-85 5.399857659752089E-4 7.199810213002785E-5 0.0 9.588239254013263 0.0016559563489906405 86-87 5.399857659752089E-4 7.199810213002785E-5 0.0 10.370804625590068 0.0016919554000556546 88-89 5.399857659752089E-4 7.199810213002785E-5 0.0 11.219230261090317 0.0017459539766531754 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 2070 0.0 47.310287 1 GTATCAA 3875 0.0 43.55273 1 TCAACGC 4835 0.0 34.653587 4 CAACGCA 5005 0.0 33.408176 5 TATCAAC 5165 0.0 32.439514 2 ATCAACG 5270 0.0 31.793186 3 AACGCAG 5465 0.0 30.675323 6 GTACATG 8045 0.0 27.005291 1 TACATGG 8465 0.0 25.176153 2 ACGCAGA 6645 0.0 24.941319 7 CGCAGAG 6980 0.0 23.131962 8 ACATGGG 9135 0.0 22.96591 3 TAAGGCG 705 0.0 22.235096 5 CATGGGG 7080 0.0 21.654053 4 GCAGAGT 7795 0.0 19.616825 9 ATGGGGG 4110 0.0 19.185823 5 GTATTAA 1415 0.0 18.814398 1 TATACTG 965 0.0 17.721046 5 AGAGTAC 6670 0.0 17.656918 10-11 TATTAAG 1195 0.0 17.47651 2 >>END_MODULE