FastQCFastQC Report
Mon 15 Aug 2016
SRR2921664_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2921664_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2639368
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA18550.051.759081
GTATCAA34450.041.2535251
TCAACGC41000.033.572514
CAACGCA41400.033.386835
GTACATG72650.032.7779051
AACGCAG44050.031.157346
ATCAACG44550.030.8978443
TACATGG76900.030.6149252
TATCAAC46800.029.6152152
ACATGGG80100.028.384483
CATGGGG59400.026.449124
GAGTACA51750.025.074451
ATGGGGG36800.023.2331035
ACGCAGA58450.023.1558387
CGCAGAG61850.021.4990128
AGTACAT56250.021.4333042
AGAGTAC57700.018.851345
TATACCG2101.9577916E-518.0947765
GCAGAGT71350.017.3053179
CAGAGTA64100.017.2531174
Produced by FastQC (version 0.11.5)