##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2921662_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3596418 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.427809559400494 33.0 31.0 34.0 29.0 34.0 2 31.56107743871819 34.0 31.0 34.0 29.0 34.0 3 31.63946154201208 34.0 31.0 34.0 28.0 34.0 4 35.116534006892415 37.0 35.0 37.0 32.0 37.0 5 34.86929244598375 37.0 35.0 37.0 32.0 37.0 6 34.84651784080716 37.0 35.0 37.0 32.0 37.0 7 34.729426612813086 37.0 35.0 37.0 32.0 37.0 8 34.678923862576596 37.0 35.0 37.0 32.0 37.0 9 36.27541375891234 39.0 37.0 39.0 32.0 39.0 10-11 36.174249489353016 39.0 37.0 39.0 32.0 39.0 12-13 36.0940224412179 39.0 37.0 39.0 32.0 39.0 14-15 37.34499910744524 40.0 38.0 41.0 32.0 41.0 16-17 37.31008214284324 40.0 38.0 41.0 31.5 41.0 18-19 37.26559287602275 40.0 38.0 41.0 31.0 41.0 20-21 37.20563113075288 40.0 38.0 41.0 31.0 41.0 22-23 37.114897934556 40.0 38.0 41.0 31.0 41.0 24-25 37.02973305661355 40.0 37.0 41.0 31.0 41.0 26-27 36.905120177910355 40.0 37.0 41.0 30.0 41.0 28-29 36.78295181483354 40.0 37.0 41.0 30.0 41.0 30-31 36.629489119451634 40.0 37.0 41.0 30.0 41.0 32-33 36.57370875687977 40.0 37.0 41.0 30.0 41.0 34-35 36.694608496565195 40.0 37.0 41.0 30.0 41.0 36-37 36.68688789790286 40.0 37.0 41.0 30.0 41.0 38-39 36.58111932483932 40.0 37.0 41.0 30.0 41.0 40-41 36.49746887041495 40.0 37.0 41.0 30.0 41.0 42-43 36.370332925705526 40.0 36.5 41.0 29.5 41.0 44-45 36.238203401273154 40.0 36.0 41.0 29.0 41.0 46-47 36.08257438373404 40.0 36.0 41.0 28.0 41.0 48-49 35.93855719774509 40.0 35.5 41.0 28.0 41.0 50-51 35.777797936724824 39.5 35.0 41.0 28.0 41.0 52-53 35.59775657334603 39.0 35.0 41.0 27.5 41.0 54-55 35.37902323923415 39.0 35.0 41.0 27.0 41.0 56-57 35.149653766608886 39.0 35.0 41.0 26.0 41.0 58-59 34.90452875611233 38.5 35.0 40.5 26.0 41.0 60-61 34.627870008436176 38.0 34.5 40.0 26.0 41.0 62-63 34.31832464969311 37.5 34.0 40.0 26.0 41.0 64-65 33.97802507939845 37.0 34.0 40.0 25.0 41.0 66-67 33.625835762138884 36.0 34.0 39.0 24.0 41.0 68-69 33.25850693662416 36.0 34.0 39.0 23.0 41.0 70-71 32.859665228012986 35.0 33.0 38.5 22.0 40.0 72-73 32.49454165227735 35.0 33.0 37.5 22.0 40.0 74-75 32.08641987666617 35.0 33.0 37.0 20.5 39.0 76-77 29.365138034566616 33.0 29.0 34.5 14.0 36.5 78-79 30.93411444387165 34.5 31.5 36.0 17.5 37.0 80-81 31.112305354939274 35.0 32.0 35.5 18.0 37.0 82-83 30.931159837371517 35.0 32.0 35.0 18.0 37.0 84-85 30.72961777524192 35.0 32.0 35.0 16.0 36.0 86-87 30.51591500209375 35.0 32.0 35.0 11.0 36.0 88-89 30.241419100894277 35.0 32.0 35.0 7.0 36.0 90-91 30.03570191229162 34.5 31.0 35.0 2.0 35.0 92-93 29.875803229769176 34.0 31.0 35.0 2.0 35.0 94-95 29.75956145809525 34.0 31.0 35.0 2.0 35.0 96-97 29.546570226264024 34.0 31.0 35.0 2.0 35.0 98-99 29.331390427920226 34.0 31.0 35.0 2.0 35.0 100-101 28.207474075594106 33.0 28.5 34.5 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 61801.0 3 21370.0 4 12094.0 5 8591.0 6 7624.0 7 7626.0 8 8151.0 9 8938.0 10 9714.0 11 10601.0 12 11404.0 13 12167.0 14 12985.0 15 14068.0 16 14664.0 17 15607.0 18 15183.0 19 14218.0 20 13621.0 21 13629.0 22 14439.0 23 16156.0 24 19195.0 25 22778.0 26 27273.0 27 32947.0 28 39611.0 29 47669.0 30 57655.0 31 71675.0 32 90737.0 33 120032.0 34 169654.0 35 253005.0 36 445424.0 37 853926.0 38 906971.0 39 113214.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.22480818578161 18.87186751721224 12.051701197914506 26.851623099091643 2 15.779378819261103 20.835422222555888 36.701220578638306 26.68397837954471 3 18.23296525323501 23.96806827052038 29.066889281480467 28.732077194764138 4 13.032790600478341 15.970822396969231 35.132750474600435 35.863636527951996 5 14.03188636519133 37.194724098168884 34.59534898726693 14.178040549372858 6 34.50275876700646 35.29884302236182 16.35139820812918 13.847000002502535 7 29.269742635517517 31.533912780414507 20.838323253393586 18.35802133067439 8 26.961020660001147 34.800042709162284 19.730576367930535 18.508360262906038 9 26.690788849890158 14.747750049841327 18.95099367063794 39.61046742963058 10-11 25.829526278277505 24.992975656546605 28.02320787438638 21.154290190789517 12-13 26.136123339749457 22.447956745724724 27.607438812203565 23.808481102322247 14-15 23.196980828192284 24.132074306952468 24.64843621827153 28.022508646583717 16-17 23.714432487329404 27.2410113675623 25.55404093100982 23.490515214098476 18-19 23.688076277124647 26.606276902201113 26.706544951006016 22.99910186966822 20-21 24.085890640125758 25.930132280505795 26.62660449912489 23.357372580243553 22-23 23.954004227818377 25.773648359791373 26.35489344604735 23.917453966342894 24-25 23.730055385987697 25.894902592789393 26.42928464237958 23.94575737884333 26-27 23.61557943067136 26.124306441109297 26.41356158235701 23.846552545862338 28-29 23.71608288333431 26.32258975869467 26.266641992552444 23.69468536541858 30-31 23.960353057521743 26.03948008058317 26.089538649108345 23.91062821278674 32-33 23.716659167522717 26.196855031443565 25.95799014784901 24.128495653184707 34-35 24.02658003724687 26.133389061812174 26.134890727409598 23.705140173531365 36-37 24.131255503992627 25.8968014764256 26.179039683804227 23.79290333577754 38-39 23.854874489005446 26.07602898217059 26.217058195126373 23.852038333697585 40-41 24.030860097803448 25.87721889850789 26.25665111686487 23.835269886823784 42-43 23.86769680445851 25.883539851702757 26.04376950122334 24.204993842615387 44-45 23.734818060034662 25.926106158700673 26.29483151878838 24.044244262476287 46-47 23.87376452710359 25.902407894791722 26.15454238320271 24.069285194901976 48-49 23.615737262179994 26.00642306586409 26.156794217739098 24.221045454216817 50-51 23.66968507664572 26.09174462947466 26.226841080165432 24.011729213714187 52-53 23.924011739696834 25.86623363442606 26.141082126436704 24.068672499440407 54-55 23.35434357197229 25.8239074594805 26.435014129252245 24.386734839294963 56-57 23.402555799490283 25.926696300333553 26.27426389721187 24.396484002964293 58-59 23.40089093889531 25.75080936613523 26.33770496954909 24.510594725420376 60-61 23.37805004369247 25.824383386990142 26.43609185637726 24.361474712940133 62-63 23.451202774467447 25.81002852061313 26.35816383430511 24.380604870614313 64-65 23.18824313022875 25.708681058718007 26.266293422991925 24.83678238806132 66-67 23.22097555424666 25.80099120723009 26.147312770035526 24.83072046848773 68-69 23.33416143055139 25.725897224325696 26.154319301304795 24.78562204381812 70-71 23.19492995196571 25.61100211442139 26.12302376449369 25.071044169119205 72-73 23.221055664868153 25.79955351505371 25.988027349845378 24.99136347023276 74-75 23.17216339923998 25.907559549751785 25.885170072416745 25.035106978591486 76-77 23.155320459403644 25.649154294855535 26.041559252312485 25.153965993428333 78-79 23.07077061196978 25.810072143859703 26.036840998673505 25.08231624549701 80-81 23.225325270024797 25.891690135338983 25.774772254290546 25.10821234034567 82-83 23.08965615834258 25.905836579013936 25.815916612790247 25.18859064985324 84-85 22.985992518938776 25.878668598669062 25.828133669824833 25.307205212567325 86-87 22.95016716308024 26.030959567973415 25.70723456991766 25.311638699028688 88-89 22.798095942988724 25.83540933628236 25.743603201167264 25.62289151956165 90-91 22.751482631631056 25.792435754953374 25.761800046574084 25.694281566841482 92-93 22.795652377728516 25.599987536411827 25.908030125716706 25.69632996014295 94-95 22.642130400475523 25.502862525766208 25.956250456231338 25.89875661752693 96-97 22.612445402095872 25.390743844126284 25.926447105177825 26.07036364860002 98-99 22.390176883716766 25.5043691228999 25.84668613442317 26.258767858960162 100-101 22.321521918536497 25.483065325180014 25.895282181554485 26.300130574729007 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 46.0 1 45.5 2 99.0 3 156.5 4 139.5 5 148.5 6 235.5 7 426.0 8 653.5 9 657.0 10 508.0 11 450.5 12 458.5 13 479.0 14 501.5 15 557.5 16 643.5 17 681.5 18 768.5 19 907.0 20 1009.0 21 1142.5 22 1378.5 23 1671.0 24 2033.5 25 2531.5 26 3276.5 27 4423.5 28 6054.0 29 8703.0 30 12918.5 31 18741.5 32 27453.0 33 34444.5 34 39910.5 35 48262.0 36 58903.0 37 69669.5 38 79667.5 39 89713.0 40 99443.0 41 108158.5 42 116356.0 43 125808.5 44 134740.5 45 143859.0 46 150709.5 47 155649.0 48 160662.5 49 163279.0 50 163217.5 51 162095.5 52 160389.0 53 158296.5 54 154069.0 55 144134.0 56 131437.5 57 117184.5 58 104939.0 59 91694.0 60 74813.0 61 61231.5 62 50360.0 63 38541.5 64 27327.0 65 19770.0 66 14837.5 67 11432.0 68 8736.0 69 6457.0 70 4795.5 71 3495.0 72 2417.0 73 1770.5 74 1342.0 75 928.0 76 629.5 77 399.0 78 213.5 79 118.0 80 73.5 81 49.5 82 31.0 83 22.0 84 18.5 85 14.5 86 8.0 87 4.0 88 3.5 89 3.5 90 3.5 91 1.5 92 0.5 93 0.5 94 1.0 95 1.0 96 0.5 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.16947418236701073 2 2.50248997752764E-4 3 0.010315819796252828 4 0.006534279385766615 5 0.0250248997752764 6 0.001807353872658851 7 2.7805444194751557E-5 8 0.0 9 1.3902722097375777E-4 10-11 0.04938246888987877 12-13 2.9195716404489136E-4 14-15 0.005561088838950312 16-17 1.3902722097375778E-5 18-19 0.0016127157632955904 20-21 2.0854083146063665E-4 22-23 1.3902722097375778E-5 24-25 5.839143280897827E-4 26-27 0.003114209749812174 28-29 0.005741824226216196 30-31 0.01751742984269348 32-33 0.012568060776027703 34-35 0.011428037564042889 36-37 0.004587898292134007 38-39 0.0 40-41 0.0034339723580518173 42-43 0.009161893862170638 44-45 0.0068262365498115065 46-47 0.0034200696359544414 48-49 0.008786520365541492 50-51 0.002738836253183028 52-53 0.0020297974262168637 54-55 0.004323746572283867 56-57 0.00786894070711469 58-59 0.015251286140821227 60-61 0.0072433182127327805 62-63 0.02149360836254295 64-65 0.04024838047190288 66-67 0.0615890588913747 68-69 0.05093957376478485 70-71 0.07026435748013718 72-73 0.03403386369437591 74-75 0.02722152986666177 76-77 0.23045152148610087 78-79 0.08651663961196947 80-81 0.06791479744568067 82-83 0.027763736028459426 84-85 0.052121305143061784 86-87 0.06874896077152322 88-89 0.29476551390856126 90-91 0.2984358325422684 92-93 0.05415110256927865 94-95 0.010579971516102968 96-97 0.01623837940973491 98-99 0.0012234395445690684 100-101 2.7805444194751555E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 3596418.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 58.82755561776855 #Duplication Level Percentage of deduplicated Percentage of total 1 78.27662081995341 46.04822264856789 2 11.966115176023818 14.078746120923311 3 3.948320424051223 6.968101180279346 4 1.7970727709047365 4.228695935183033 5 1.0059294515666681 2.9588185379794796 6 0.6589627349169077 2.325910016301676 7 0.42347704774132794 1.743848370519598 8 0.3114914875291159 1.465942624566442 9 0.23690730537189378 1.2543009914718684 >10 1.2919488199175952 13.48333420391736 >50 0.06311830905627494 2.5052503150050804 >100 0.01809211975750693 1.7402813600270708 >500 0.0011376779850051397 0.46310567124972474 >1k 8.058552244307468E-4 0.735442024008163 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.7805444194751557E-5 2 0.0 0.0 0.0 0.0 2.7805444194751557E-5 3 0.0 0.0 0.0 0.0 2.7805444194751557E-5 4 0.0 0.0 0.0 0.0 5.5610888389503114E-5 5 0.0 0.0 0.0 0.0 8.341633258425467E-5 6 0.0 0.0 0.0 0.0 1.1122177677900623E-4 7 0.0 0.0 0.0 5.5610888389503114E-5 1.1122177677900623E-4 8 0.0 0.0 0.0 5.5610888389503114E-5 1.1122177677900623E-4 9 0.0 0.0 0.0 5.5610888389503114E-5 1.1122177677900623E-4 10-11 0.0 0.0 0.0 5.5610888389503114E-5 1.1122177677900623E-4 12-13 0.0 0.0 0.0 8.341633258425467E-5 1.8073538726588511E-4 14-15 0.0 1.3902722097375778E-5 0.0 8.341633258425467E-5 2.2244355355801243E-4 16-17 0.0 2.7805444194751557E-5 0.0 1.25124498876382E-4 2.50248997752764E-4 18-19 0.0 2.7805444194751557E-5 0.0 1.946381093632609E-4 2.7805444194751555E-4 20-21 0.0 2.7805444194751557E-5 0.0 2.3634627565538824E-4 3.058598861422671E-4 22-23 0.0 2.7805444194751557E-5 0.0 4.1708166292127335E-4 3.3366533033701867E-4 24-25 0.0 2.7805444194751557E-5 0.0 5.978170501871585E-4 3.3366533033701867E-4 26-27 0.0 2.7805444194751557E-5 0.0 0.001126120489887438 3.6147077453177023E-4 28-29 0.0 2.7805444194751557E-5 0.0 0.006075489556553215 3.892762187265218E-4 30-31 0.0 2.7805444194751557E-5 0.0 0.02733275164344078 3.892762187265218E-4 32-33 0.0 2.7805444194751557E-5 0.0 0.07646497153556678 3.892762187265218E-4 34-35 0.0 2.7805444194751557E-5 0.0 0.14439367170334483 4.7269255131077647E-4 36-37 0.0 2.7805444194751557E-5 0.0 0.2578398840179312 4.7269255131077647E-4 38-39 0.0 2.7805444194751557E-5 0.0 0.4338066376044164 4.7269255131077647E-4 40-41 0.0 2.7805444194751557E-5 0.0 0.6244129575594383 4.7269255131077647E-4 42-43 0.0 2.7805444194751557E-5 0.0 0.8271702566275667 4.7269255131077647E-4 44-45 0.0 2.7805444194751557E-5 0.0 1.0749306671249004 5.00497995505528E-4 46-47 0.0 2.7805444194751557E-5 0.0 1.3610347851667965 5.978170501871585E-4 48-49 0.0 2.7805444194751557E-5 0.0 1.6504199456236734 6.117197722845342E-4 50-51 0.0 2.7805444194751557E-5 0.0 1.9581984074153782 6.117197722845342E-4 52-53 0.0 4.1708166292127334E-5 0.0 2.2679093475786187 6.534279385766615E-4 54-55 0.0 5.5610888389503114E-5 0.0 2.6220255821208767 6.673306606740373E-4 56-57 0.0 5.5610888389503114E-5 0.0 3.027331639425673 6.812333827714131E-4 58-59 0.0 5.5610888389503114E-5 0.0 3.4482643563679196 6.951361048687888E-4 60-61 0.0 5.5610888389503114E-5 0.0 3.8819180640292643 6.951361048687888E-4 62-63 0.0 5.5610888389503114E-5 0.0 4.318977938604467 7.229415490635405E-4 64-65 0.0 5.5610888389503114E-5 0.0 4.801166049107751 7.229415490635405E-4 66-67 0.0 5.5610888389503114E-5 0.0 5.358303734437988 7.229415490635405E-4 68-69 0.0 5.5610888389503114E-5 0.0 5.947542805091066 7.229415490635405E-4 70-71 0.0 5.5610888389503114E-5 0.0 6.546611100266988 7.507469932582921E-4 72-73 0.0 5.5610888389503114E-5 0.0 7.159359673986728 8.341633258425467E-4 74-75 0.0 5.5610888389503114E-5 0.0 7.8047796446353015 9.036769363294256E-4 76-77 0.0 5.5610888389503114E-5 0.0 8.533574239701837 9.175796584268013E-4 78-79 0.0 5.5610888389503114E-5 0.0 9.317089948943643 9.175796584268013E-4 80-81 0.0 5.5610888389503114E-5 0.0 10.11596816610305 9.314823805241771E-4 82-83 0.0 5.5610888389503114E-5 0.0 10.936534629734364 9.731905468163044E-4 84-85 0.0 5.5610888389503114E-5 0.0 11.782918448300503 0.0010288014352058076 86-87 0.0 5.5610888389503114E-5 0.0 12.686442454686858 0.0010288014352058076 88-89 0.0 5.5610888389503114E-5 0.0 13.657603204076946 0.0010288014352058076 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 2295 0.0 48.688194 1 GTATCAA 4195 0.0 38.19763 1 TCAACGC 5060 0.0 30.583855 4 GTACATG 8440 0.0 30.422146 1 ATCAACG 5280 0.0 29.30871 3 CAACGCA 5265 0.0 29.234253 5 TATCAAC 5495 0.0 28.161573 2 TACATGG 9080 0.0 27.602924 2 AACGCAG 5715 0.0 26.927471 6 ACATGGG 9510 0.0 25.556566 3 CATGGGG 7520 0.0 23.419693 4 ACGCAGA 7065 0.0 21.109222 7 CGCAGAG 7220 0.0 20.392912 8 ATGGGGG 4370 0.0 19.784967 5 TAAGGTG 1660 0.0 18.315437 5 GAGTACA 6415 0.0 18.159668 1 TATACTG 1185 0.0 17.238342 5 GTAAGGT 1560 0.0 16.736446 4 TGTACCG 710 0.0 16.727346 5 AGAGTAC 7085 0.0 16.491114 10-11 >>END_MODULE